Literatura académica sobre el tema "RNA-Protein docking"
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Artículos de revistas sobre el tema "RNA-Protein docking"
Arnautova, Yelena A., Ruben Abagyan y Maxim Totrov. "Protein-RNA Docking Using ICM". Journal of Chemical Theory and Computation 14, n.º 9 (17 de julio de 2018): 4971–84. http://dx.doi.org/10.1021/acs.jctc.8b00293.
Texto completoHe, Jiahua, Huanyu Tao y Sheng-You Huang. "Protein-ensemble–RNA docking by efficient consideration of protein flexibility through homology models". Bioinformatics 35, n.º 23 (14 de mayo de 2019): 4994–5002. http://dx.doi.org/10.1093/bioinformatics/btz388.
Texto completoDelgado Blanco, Javier, Leandro G. Radusky, Damiano Cianferoni y Luis Serrano. "Protein-assisted RNA fragment docking (RnaX) for modeling RNA–protein interactions using ModelX". Proceedings of the National Academy of Sciences 116, n.º 49 (15 de noviembre de 2019): 24568–73. http://dx.doi.org/10.1073/pnas.1910999116.
Texto completoPérez-Cano, Laura, Miguel Romero-Durana y Juan Fernández-Recio. "Structural and energy determinants in protein-RNA docking". Methods 118-119 (abril de 2017): 163–70. http://dx.doi.org/10.1016/j.ymeth.2016.11.001.
Texto completoZhang, Zhao, Lin Lu, Yue Zhang, Chun Hua Li, Cun Xin Wang, Xiao Yi Zhang y Jian Jun Tan. "A combinatorial scoring function for protein-RNA docking". Proteins: Structure, Function, and Bioinformatics 85, n.º 4 (9 de febrero de 2017): 741–52. http://dx.doi.org/10.1002/prot.25253.
Texto completoZheng, Jinfang, Xu Hong, Juan Xie, Xiaoxue Tong y Shiyong Liu. "P3DOCK: a protein–RNA docking webserver based on template-based and template-free docking". Bioinformatics 36, n.º 1 (7 de junio de 2019): 96–103. http://dx.doi.org/10.1093/bioinformatics/btz478.
Texto completoSetny, Piotr y Martin Zacharias. "A coarse-grained force field for Protein–RNA docking". Nucleic Acids Research 39, n.º 21 (16 de agosto de 2011): 9118–29. http://dx.doi.org/10.1093/nar/gkr636.
Texto completoNithin, Chandran, Sunandan Mukherjee y Ranjit Prasad Bahadur. "A non-redundant protein-RNA docking benchmark version 2.0". Proteins: Structure, Function, and Bioinformatics 85, n.º 2 (2 de diciembre de 2016): 256–67. http://dx.doi.org/10.1002/prot.25211.
Texto completoWicaksono, Adhityo y Arli Aditya Parikesit. "Molecular Docking and Dynamics of SARS-CoV-2 Programmed Ribosomal Frameshifting RNA and Ligands for RNA-Targeting Alkaloids Prospecting". HAYATI Journal of Biosciences 30, n.º 6 (24 de julio de 2023): 1025–35. http://dx.doi.org/10.4308/hjb.30.6.1025-1035.
Texto completoLi, Yaozong, Jie Shen, Xianqiang Sun, Weihua Li, Guixia Liu y Yun Tang. "Accuracy Assessment of Protein-Based Docking Programs against RNA Targets". Journal of Chemical Information and Modeling 50, n.º 6 (19 de mayo de 2010): 1134–46. http://dx.doi.org/10.1021/ci9004157.
Texto completoTesis sobre el tema "RNA-Protein docking"
Patschull, Lafitte-Laplace Anathe Olivia Maria. "In silico ligand fitting/docking, computational analysis and biochemical/biophysical validation for protein-RNA recognition and for rational drug design in diseases". Thesis, Birkbeck (University of London), 2014. http://bbktheses.da.ulcc.ac.uk/84/.
Texto completoChevrollier, Nicolas. "Développement et application d’une approche de docking par fragments pour modéliser les interactions entre protéines et ARN simple-brin". Thesis, Université Paris-Saclay (ComUE), 2019. http://www.theses.fr/2019SACLS106/document.
Texto completoRNA-protein interactions mediate numerous fundamental cellular processes. Atomic scale details of these interactions shed light on their functions but can also allow the rational design of ligands that could modulate them. NMR and X-ray crystallography are the 2 main techniques used to resolve 3D highresolution structures between two interacting molecules. Docking approaches can also be utilized to give models as an alternative. However, the application of these approaches to RNA-protein complexes is hampered by an issue. RNA-protein interactions often relies on the specific recognition of a short singlestranded RNA (ssRNA) sequence by the protein. The inherent flexibility of the ssRNA segment would impose, in a classical docking approach, to explore their resulting large conformation space which is not computationally reliable. The goal of this project is to overcome this barrier by using a fragment-based docking approach. This approach developed from some of the most represented RNA-binding domains showed excellent results in the prediction of the ssRNA-protein binding mode from the RNA sequence and also a great potential to predict preferential RNA binding sequences
Zhang, Jin. "Macromolecular Interactions in West Nile Virus RNA-TIAR Protein Complexes and of Membrane Associated Kv Channel Peptides". Digital Archive @ GSU, 2013. http://digitalarchive.gsu.edu/chemistry_diss/81.
Texto completoCapítulos de libros sobre el tema "RNA-Protein docking"
Madan, Bharat, Joanna M. Kasprzak, Irina Tuszynska, Marcin Magnus, Krzysztof Szczepaniak, Wayne K. Dawson y Janusz M. Bujnicki. "Modeling of Protein–RNA Complex Structures Using Computational Docking Methods". En Methods in Molecular Biology, 353–72. New York, NY: Springer New York, 2016. http://dx.doi.org/10.1007/978-1-4939-3569-7_21.
Texto completoGuo, Yun, Xiaoyong Pan y Hong-Bin Shen. "Recent progress of methodology development for protein–RNA docking". En Protein Interactions, 271–95. WORLD SCIENTIFIC, 2020. http://dx.doi.org/10.1142/9789811211874_0011.
Texto completoUmare, Mohit, Fai A. Alkathiri y Rupesh Chikhale. "Development of Nucleic Acid Targeting Molecules: Molecular Docking Approaches and Recent Advances". En Biomedical Engineering. IntechOpen, 2022. http://dx.doi.org/10.5772/intechopen.107349.
Texto completoPÉREZ-CANO, LAURA, ALBERT SOLERNOU, CARLES PONS y JUAN FERNÁNDEZ-RECIO. "STRUCTURAL PREDICTION OF PROTEIN-RNA INTERACTION BY COMPUTATIONAL DOCKING WITH PROPENSITY-BASED STATISTICAL POTENTIALS". En Biocomputing 2010, 293–301. WORLD SCIENTIFIC, 2009. http://dx.doi.org/10.1142/9789814295291_0031.
Texto completoMadala, Sanjay, S. S. V. Kiran K y Burra V. L. S. Prasad. "In Silico Design of Natural Compound-Derived Novel Inhibitors Against RdRP OF SARS-CoV-2". En Current Trends in Drug Discovery, Development and Delivery (CTD4-2022), 142–54. Royal Society of Chemistry, 2023. http://dx.doi.org/10.1039/9781837671090-00142.
Texto completoOxford, John, Paul Kellam y Leslie Collier. "General properties of viruses". En Human Virology. Oxford University Press, 2016. http://dx.doi.org/10.1093/hesc/9780198714682.003.0002.
Texto completoActas de conferencias sobre el tema "RNA-Protein docking"
Kralj, Sebastjan, Milan Hodošček, Marko Jukić y Urban Bren. "A comprehensive in silico protocol for fast automated mutagenesis and binding affinity scoring of protein-ligand complexes". En 2nd International Conference on Chemo and Bioinformatics. Institute for Information Technologies, University of Kragujevac, 2023. http://dx.doi.org/10.46793/iccbi23.674k.
Texto completoSan, Avdar, Anjana Saxena y Shaneen Singh. "Abstract 844: RNA binding domains of nucleolin exhibit specificity in driving nucleolin-miRNA interactions: Anin silicomodeling and RNA-protein docking study". En Proceedings: AACR Annual Meeting 2020; April 27-28, 2020 and June 22-24, 2020; Philadelphia, PA. American Association for Cancer Research, 2020. http://dx.doi.org/10.1158/1538-7445.am2020-844.
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