Literatura académica sobre el tema "Protein sequence alignment"
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Artículos de revistas sobre el tema "Protein sequence alignment"
Staritzbichler, René, Edoardo Sarti, Emily Yaklich, Antoniya Aleksandrova, Marcus Stamm, Kamil Khafizov y Lucy R. Forrest. "Refining pairwise sequence alignments of membrane proteins by the incorporation of anchors". PLOS ONE 16, n.º 4 (30 de abril de 2021): e0239881. http://dx.doi.org/10.1371/journal.pone.0239881.
Texto completoPervez, Muhammad Tariq, Hayat Ali Shah, Masroor Ellahi Babar, Nasir Naveed y Muhammad Shoaib. "SAliBASE: A Database of Simulated Protein Alignments". Evolutionary Bioinformatics 15 (enero de 2019): 117693431882108. http://dx.doi.org/10.1177/1176934318821080.
Texto completoCavanaugh, David y Krishnan Chittur. "A hydrophobic proclivity index for protein alignments". F1000Research 4 (21 de octubre de 2015): 1097. http://dx.doi.org/10.12688/f1000research.6348.1.
Texto completoCavanaugh, David y Krishnan Chittur. "A hydrophobic proclivity index for protein alignments". F1000Research 4 (15 de octubre de 2020): 1097. http://dx.doi.org/10.12688/f1000research.6348.2.
Texto completoAadland, Kelsey y Bryan Kolaczkowski. "Alignment-Integrated Reconstruction of Ancestral Sequences Improves Accuracy". Genome Biology and Evolution 12, n.º 9 (12 de agosto de 2020): 1549–65. http://dx.doi.org/10.1093/gbe/evaa164.
Texto completoBarton, Geoffrey J. "Protein Sequence Alignment Techniques". Acta Crystallographica Section D Biological Crystallography 54, n.º 6 (1 de noviembre de 1998): 1139–46. http://dx.doi.org/10.1107/s0907444998008324.
Texto completoKanagarajadurai, Karuppiah, Singaravelu Kalaimathy, Paramasivam Nagarajan y Ramanathan Sowdhamini. "PASS2". International Journal of Knowledge Discovery in Bioinformatics 2, n.º 4 (octubre de 2011): 53–66. http://dx.doi.org/10.4018/jkdb.2011100104.
Texto completoPei, Jimin. "Multiple protein sequence alignment". Current Opinion in Structural Biology 18, n.º 3 (junio de 2008): 382–86. http://dx.doi.org/10.1016/j.sbi.2008.03.007.
Texto completoPAI, TUN-WEN, RUEI-HSIANG CHANG, CHIEN-MING CHEN, PO-HAN SU, LEE-JYI WANG, KUEN-TSAIR LAY y KUO-TORNG LAN. "MULTIPLE STRUCTURE ALIGNMENT BASED ON GEOMETRICAL CORRELATION OF SECONDARY STRUCTURE ELEMENTS". New Mathematics and Natural Computation 06, n.º 01 (marzo de 2010): 77–95. http://dx.doi.org/10.1142/s1793005710001621.
Texto completoHenneke, Christina M., Michael J. Danson, David W. Hough y David J. Osguthorpe. "Sequence alignment of citrate synthase proteins using a multiple sequence alignment algorithm and multiple scoring matrices". "Protein Engineering, Design and Selection" 2, n.º 8 (1989): 597–604. http://dx.doi.org/10.1093/protein/2.8.597.
Texto completoTesis sobre el tema "Protein sequence alignment"
Abhiman, Saraswathi. "Prediction of function shift in protein families /". Stockholm, 2006. http://diss.kib.ki.se/2006/91-7140-869-X/.
Texto completoCarroll, Hyrum D. "Biologically Relevant Multiple Sequence Alignment". Diss., CLICK HERE for online access, 2008. http://contentdm.lib.byu.edu/ETD/image/etd2623.pdf.
Texto completoTalbot, Danielle. "Identifying misalignments in sequence alignment for protein modelling". Thesis, University of Reading, 2005. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.445754.
Texto completoGarriga, Nogales Edgar 1990. "New algorithmic contributions for large scale multiple sequence alignments of protein sequences". Doctoral thesis, TDX (Tesis Doctorals en Xarxa), 2022. http://hdl.handle.net/10803/673526.
Texto completoEn aquests dies de profunds canvis i una ràpida evolució de la tecnologia, la quantitat de dataque la ciència ha de treballar ha crescut increïblement ràpid i la grandària dels arxius ha crescutde manera quasi prohibitiva.Els alineaments múltiples de seqüència (MSA) es fan servir endiverses àrees de la biologia, i l'increment de les dades ha produït una degradació delsresultats. És per això, que es proposa una nova estratègia per realitzar els alineaments. Aquestnou paradigma permet alinear milions de seqüències i l'opcio de modularitzar el procés.'Regressive' permet la paral·lelització del procés i la combinació de diferents algoritmesd'agrupacio (guide-tree) amb el mètode de alineament que és desitgi. Dins del camp del'agrupació, s'ha de repensar l'estratègia per crear els guide-tree. Un estudi sobre l'estat actualdels mètodes i les seves virtuts i punts febles ha sigut realitzar per llençar una mica de llum enaquesta àrea. Els 'guide-tree' no poden ser el coll de botella, i haurien de servir per començarde la millor manera possible el procés d'alineament.
Bonneau, Richard A. "Gene annotation using Ab initio protein structure prediction : method development and application to major protein families /". Thesis, Connect to this title online; UW restricted, 2001. http://hdl.handle.net/1773/9241.
Texto completoLassmann, Timo. "Algorithms for building and evaluating multiple sequence alignments /". Stockholm, 2006. http://diss.kib.ki.se/2006/91-7140-887-8/.
Texto completoHollich, Volker. "Orthology and protein domain architecture evolution /". Stockholm, 2006. http://diss.kib.ki.se/2006/91-7140-783-9/.
Texto completoLi, Yuheng. "Searching for remotely homologous sequences in protein databases with hybrid PSI-blast". The Ohio State University, 2006. http://rave.ohiolink.edu/etdc/view?acc_num=osu1164741421.
Texto completoDeBlasio, Dan y John Kececioglu. "Core column prediction for protein multiple sequence alignments". BIOMED CENTRAL LTD, 2017. http://hdl.handle.net/10150/623957.
Texto completoAniba, Mohamed Radhouane. "Knowledge based expert system development in bioinformatics : applied to multiple sequence alignment of protein sequences". Strasbourg, 2010. https://publication-theses.unistra.fr/public/theses_doctorat/2010/ANIBA_Mohamed_Radhouane_2010.pdf.
Texto completoThe objective of this PhD project was the development of an integrated expert system to test, evaluate and optimize all the stages of the construction and the analysis of a multiple sequence alignment. The new system was validated using standard benchmark cases and brings a ncw vision to software development in Bioinformatics: knowledge-guided systems. The architecture used to build the expert system is highly modular and flcxible, allowing AlcxSys to evolve as new algorithms are made available. In the future, AlexSys will he uscd to furthcr optimize each stage of the alignment process, for example by optimizing the input parameters of the different algorithms. The inference engine could also be extended to identify combinations of algorithms that could potentially provide complementary information about the input sequences. For example, well aligned regions from different aligners could be identified and combined into a single consensus alignment. Additional structural and functional information could also be exploited to improve the final alignment accuracy. Finally, a crucial aspect of any bioinformatics tool is its accessibility and usability. Therefore, we are currently developing a web server, and a web services based distributed system. We will also design a novel visualization module that will provide an intuitive, user-friendly interface to all the information retrieved and constructed by AlexSys
Libros sobre el tema "Protein sequence alignment"
Russell, David James. Multiple sequence alignment methods. New York: Humana Press, 2014.
Buscar texto completoHomology modeling: Methods and protocols. New York: Humana Press, 2012.
Buscar texto completoSheng wu ji suan: Sheng wu xu lie de fen xi fang fa yu ying yong. Beijing: Ke xue chu ban she, 2010.
Buscar texto completoCapítulos de libros sobre el tema "Protein sequence alignment"
Do, Chuong B. y Kazutaka Katoh. "Protein Multiple Sequence Alignment". En Functional Proteomics, 379–413. Totowa, NJ: Humana Press, 2008. http://dx.doi.org/10.1007/978-1-59745-398-1_25.
Texto completoBarton, Geoffrey J., Robert B. Russell y Craig D. Livingstone. "Prediction of Protein Structure from Multiple Sequence Alignment". En Methods in Protein Sequence Analysis, 209–20. Boston, MA: Springer US, 1993. http://dx.doi.org/10.1007/978-1-4899-1603-7_27.
Texto completoShatsky, Maxim, Ruth Nussinov y Haim J. Wolfson. "Algorithms for Multiple Protein Structure Alignment and Structure-Derived Multiple Sequence Alignment". En Protein Structure Prediction, 125–46. Totowa, NJ: Humana Press, 2008. http://dx.doi.org/10.1007/978-1-59745-574-9_5.
Texto completoLiu, Yongchao y Bertil Schmidt. "Multiple Protein Sequence Alignment with MSAProbs". En Methods in Molecular Biology, 211–18. Totowa, NJ: Humana Press, 2013. http://dx.doi.org/10.1007/978-1-62703-646-7_14.
Texto completoBarton, Geoffrey J. "The AMPS Package for Multiple Protein Sequence Alignment". En Computer Analysis of Sequence Data, 327–47. Totowa, NJ: Humana Press, 1994. http://dx.doi.org/10.1385/0-89603-276-0:327.
Texto completoDo, Chuong B., Samuel S. Gross y Serafim Batzoglou. "CONTRAlign: Discriminative Training for Protein Sequence Alignment". En Lecture Notes in Computer Science, 160–74. Berlin, Heidelberg: Springer Berlin Heidelberg, 2006. http://dx.doi.org/10.1007/11732990_15.
Texto completoHiggins, Desmond G. "Clustal V: Multiple Alignment of DNA and Protein Sequences". En Computer Analysis of Sequence Data, 307–18. Totowa, NJ: Humana Press, 1994. http://dx.doi.org/10.1385/0-89603-276-0:307.
Texto completoKumar, Manish, Ranjeet Kumar y R. Nidhya. "WOAMSA: Whale Optimization Algorithm for Multiple Sequence Alignment of Protein Sequence". En Computational Vision and Bio-Inspired Computing, 131–39. Cham: Springer International Publishing, 2020. http://dx.doi.org/10.1007/978-3-030-37218-7_15.
Texto completoManikandan, P. y D. Ramyachitra. "Influence of Parameters in Multiple Sequence Alignment Methods for Protein Sequences". En Advances in Intelligent Systems and Computing, 183–91. Singapore: Springer Singapore, 2018. http://dx.doi.org/10.1007/978-981-10-7871-2_18.
Texto completoReizer, Aiala y Jonathan Reizer. "Progressive Multiple Alignment of Protein Sequences and the Construction of Phylogenetic Trees". En Computer Analysis of Sequence Data, 319–25. Totowa, NJ: Humana Press, 1994. http://dx.doi.org/10.1385/0-89603-276-0:319.
Texto completoActas de conferencias sobre el tema "Protein sequence alignment"
Hasan, L., M. Kentie y Z. Al-Ars. "GPU-accelerated protein sequence alignment". En 2011 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE, 2011. http://dx.doi.org/10.1109/iembs.2011.6090679.
Texto completoMidic, Uros, A. Keith Dunker y Zoran Obradovic. "Protein sequence alignment and structural disorder". En the KDD-09 Workshop. New York, New York, USA: ACM Press, 2009. http://dx.doi.org/10.1145/1562090.1562096.
Texto completoHung, Che-Lun, Chun-Yuan Lin, Yeh-Ching Chung y Chuan Yi Tang. "Introducing Variable Gap Penalties into Three-Sequence Alignment for Protein Sequences". En 22nd International Conference on Advanced Information Networking and Applications - Workshops (aina workshops 2008). IEEE, 2008. http://dx.doi.org/10.1109/waina.2008.101.
Texto completoCarvalho, Leonardo Reboucas de, Alba Cristina Alves Melo y Aleteia Araujo. "A Framework for Executing Protein Sequence Alignment in Cloud Computing Services". En Simpósio em Sistemas Computacionais de Alto Desempenho. Sociedade Brasileira de Computação, 2021. http://dx.doi.org/10.5753/wscad.2021.18511.
Texto completoWise, Michael J. "Alignment algorithms revisited: Alignment algorithms for low similarity protein sequence comparisons". En 2003 European Control Conference (ECC). IEEE, 2003. http://dx.doi.org/10.23919/ecc.2003.7086563.
Texto completoAit, Layal Al, Eduardo Corel y Burkhard Morgenstern. "Using protein-domain information for multiple sequence alignment". En 2012 IEEE 12th International Conference on Bioinformatics & Bioengineering (BIBE). IEEE, 2012. http://dx.doi.org/10.1109/bibe.2012.6399667.
Texto completoNord, Alex, Peter Hornbeck, Kaitlin Carey y Travis Wheeler. "Splice-Aware Multiple Sequence Alignment of Protein Isoforms". En BCB '18: 9th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics. New York, NY, USA: ACM, 2018. http://dx.doi.org/10.1145/3233547.3233592.
Texto completo"IMPROVEMENTS TO A MULTIPLE PROTEIN SEQUENCE ALIGNMENT TOOL". En International Conference on Bioinformatics Models, Methods and Algorithms. SciTePress - Science and and Technology Publications, 2012. http://dx.doi.org/10.5220/0003789202260233.
Texto completoIryanto, Syam B., Wisnu A. Kusuma, Rifki Sadikin y I. Wayan A. Swardiana. "GPU-accelerated protein sequence alignment for Jamu prediction". En 2017 International Conference on Computer, Control, Informatics and its Applications (IC3INA). IEEE, 2017. http://dx.doi.org/10.1109/ic3ina.2017.8251754.
Texto completoQi-wen Dong, Lei Lin, Xiao-Long Wang y Ming-Hui Li. "Contact-based Simulated Annealing Protein Sequence Alignment Method". En 2005 IEEE Engineering in Medicine and Biology 27th Annual Conference. IEEE, 2005. http://dx.doi.org/10.1109/iembs.2005.1617054.
Texto completoInformes sobre el tema "Protein sequence alignment"
Rangwala, Huzefa y George Karypis. Incremental Window-based Protein Sequence Alignment Algorithms. Fort Belvoir, VA: Defense Technical Information Center, marzo de 2006. http://dx.doi.org/10.21236/ada444856.
Texto completoRafaeli, Ada y Russell Jurenka. Molecular Characterization of PBAN G-protein Coupled Receptors in Moth Pest Species: Design of Antagonists. United States Department of Agriculture, diciembre de 2012. http://dx.doi.org/10.32747/2012.7593390.bard.
Texto completoRafaeli, Ada, Russell Jurenka y Chris Sander. Molecular characterisation of PBAN-receptors: a basis for the development and screening of antagonists against Pheromone biosynthesis in moth pest species. United States Department of Agriculture, enero de 2008. http://dx.doi.org/10.32747/2008.7695862.bard.
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