Artículos de revistas sobre el tema "Protein-RNA docking"
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Arnautova, Yelena A., Ruben Abagyan y Maxim Totrov. "Protein-RNA Docking Using ICM". Journal of Chemical Theory and Computation 14, n.º 9 (17 de julio de 2018): 4971–84. http://dx.doi.org/10.1021/acs.jctc.8b00293.
Texto completoHe, Jiahua, Huanyu Tao y Sheng-You Huang. "Protein-ensemble–RNA docking by efficient consideration of protein flexibility through homology models". Bioinformatics 35, n.º 23 (14 de mayo de 2019): 4994–5002. http://dx.doi.org/10.1093/bioinformatics/btz388.
Texto completoDelgado Blanco, Javier, Leandro G. Radusky, Damiano Cianferoni y Luis Serrano. "Protein-assisted RNA fragment docking (RnaX) for modeling RNA–protein interactions using ModelX". Proceedings of the National Academy of Sciences 116, n.º 49 (15 de noviembre de 2019): 24568–73. http://dx.doi.org/10.1073/pnas.1910999116.
Texto completoPérez-Cano, Laura, Miguel Romero-Durana y Juan Fernández-Recio. "Structural and energy determinants in protein-RNA docking". Methods 118-119 (abril de 2017): 163–70. http://dx.doi.org/10.1016/j.ymeth.2016.11.001.
Texto completoZhang, Zhao, Lin Lu, Yue Zhang, Chun Hua Li, Cun Xin Wang, Xiao Yi Zhang y Jian Jun Tan. "A combinatorial scoring function for protein-RNA docking". Proteins: Structure, Function, and Bioinformatics 85, n.º 4 (9 de febrero de 2017): 741–52. http://dx.doi.org/10.1002/prot.25253.
Texto completoZheng, Jinfang, Xu Hong, Juan Xie, Xiaoxue Tong y Shiyong Liu. "P3DOCK: a protein–RNA docking webserver based on template-based and template-free docking". Bioinformatics 36, n.º 1 (7 de junio de 2019): 96–103. http://dx.doi.org/10.1093/bioinformatics/btz478.
Texto completoSetny, Piotr y Martin Zacharias. "A coarse-grained force field for Protein–RNA docking". Nucleic Acids Research 39, n.º 21 (16 de agosto de 2011): 9118–29. http://dx.doi.org/10.1093/nar/gkr636.
Texto completoNithin, Chandran, Sunandan Mukherjee y Ranjit Prasad Bahadur. "A non-redundant protein-RNA docking benchmark version 2.0". Proteins: Structure, Function, and Bioinformatics 85, n.º 2 (2 de diciembre de 2016): 256–67. http://dx.doi.org/10.1002/prot.25211.
Texto completoWicaksono, Adhityo y Arli Aditya Parikesit. "Molecular Docking and Dynamics of SARS-CoV-2 Programmed Ribosomal Frameshifting RNA and Ligands for RNA-Targeting Alkaloids Prospecting". HAYATI Journal of Biosciences 30, n.º 6 (24 de julio de 2023): 1025–35. http://dx.doi.org/10.4308/hjb.30.6.1025-1035.
Texto completoLi, Yaozong, Jie Shen, Xianqiang Sun, Weihua Li, Guixia Liu y Yun Tang. "Accuracy Assessment of Protein-Based Docking Programs against RNA Targets". Journal of Chemical Information and Modeling 50, n.º 6 (19 de mayo de 2010): 1134–46. http://dx.doi.org/10.1021/ci9004157.
Texto completoGuilhot-Gaudeffroy, Adrien, Christine Froidevaux, Jérôme Azé y Julie Bernauer. "Protein-RNA Complexes and Efficient Automatic Docking: Expanding RosettaDock Possibilities". PLoS ONE 9, n.º 9 (30 de septiembre de 2014): e108928. http://dx.doi.org/10.1371/journal.pone.0108928.
Texto completoHuang, Sheng-You y Xiaoqin Zou. "A nonredundant structure dataset for benchmarking protein-RNA computational docking". Journal of Computational Chemistry 34, n.º 4 (10 de octubre de 2012): 311–18. http://dx.doi.org/10.1002/jcc.23149.
Texto completoMarium Bibi, Marium Bibi. "Binding Pattern Analysis of Different Allosteric Inhibitors of Hepatitis C Virus (HCV) Polymerase". Journal of the chemical society of pakistan 45, n.º 6 (2023): 576. http://dx.doi.org/10.52568/001393/jcsp/45.06.2023.
Texto completoMarwal, Avinash, Mukesh Meena y RK Gaur. "Molecular Docking Studies of Coronavirus Proteins with Medicinal Plant Based Phytochemicals". Defence Life Science Journal 6, n.º 1 (23 de febrero de 2021): 57–63. http://dx.doi.org/10.14429/dlsj.6.15704.
Texto completoSelvaraj, Jayaraman. "Molecular docking analysis of SARS-CoV-2 linked RNA dependent RNA polymerase (RdRp) with compounds from Plectranthus amboinicus". Bioinformation 17, n.º 1 (31 de enero de 2021): 167–70. http://dx.doi.org/10.6026/97320630017167.
Texto completoStefaniak, Filip y Janusz M. Bujnicki. "AnnapuRNA: A scoring function for predicting RNA-small molecule binding poses". PLOS Computational Biology 17, n.º 2 (1 de febrero de 2021): e1008309. http://dx.doi.org/10.1371/journal.pcbi.1008309.
Texto completoda Silva, Joyce Kelly R., Pablo Luis Baia Figueiredo, Kendall G. Byler y William N. Setzer. "Essential Oils as Antiviral Agents, Potential of Essential Oils to Treat SARS-CoV-2 Infection: An In-Silico Investigation". International Journal of Molecular Sciences 21, n.º 10 (12 de mayo de 2020): 3426. http://dx.doi.org/10.3390/ijms21103426.
Texto completoMa, Hongli, Han Wen, Zhiyuan Xue, Guojun Li y Zhaolei Zhang. "RNANetMotif: Identifying sequence-structure RNA network motifs in RNA-protein binding sites". PLOS Computational Biology 18, n.º 7 (12 de julio de 2022): e1010293. http://dx.doi.org/10.1371/journal.pcbi.1010293.
Texto completoYan, Yumeng, Di Zhang, Pei Zhou, Botong Li y Sheng-You Huang. "HDOCK: a web server for protein–protein and protein–DNA/RNA docking based on a hybrid strategy". Nucleic Acids Research 45, W1 (17 de mayo de 2017): W365—W373. http://dx.doi.org/10.1093/nar/gkx407.
Texto completoSharma, Arun Dev, Inderjeet Kaur y Amrita Chauhan. "Targeting H3N2 influenza virus RNA dependent RNA polymerase dependent inhibitory activity by principal components from latex of Calotropis gigantean". Trends in Horticulture 6, n.º 2 (17 de noviembre de 2023): 2940. http://dx.doi.org/10.24294/th.v6i2.2940.
Texto completoEmmanuel Chuks Oranu, Esther Oluchukwu Eze, Adanna Ijeawele, Chisom George Obidimma, Belinda Chinecherem Umeh, Perpetua Chinonyelum Ejezie y IC Uzochukwu. "Validation of the binding affinities and stabilities of ivermectin and moxidectin against Sars-CoV-2 receptors using molecular docking and molecular dynamics simulation". GSC Biological and Pharmaceutical Sciences 26, n.º 1 (30 de enero de 2024): 303–14. http://dx.doi.org/10.30574/gscbps.2024.26.1.0030.
Texto completoIvashkina, Natalia, Benno Wölk, Volker Lohmann, Ralf Bartenschlager, Hubert E. Blum, François Penin y Darius Moradpour. "The Hepatitis C Virus RNA-Dependent RNA Polymerase Membrane Insertion Sequence Is a Transmembrane Segment". Journal of Virology 76, n.º 24 (15 de diciembre de 2002): 13088–93. http://dx.doi.org/10.1128/jvi.76.24.13088-13093.2002.
Texto completoAsadzadeh, Homayoun, Ali Moosavi, Georgios Alexandrakis y Mohammad R. K. Mofrad. "Atomic Scale Interactions between RNA and DNA Aptamers with the TNF-α Protein". BioMed Research International 2021 (16 de julio de 2021): 1–11. http://dx.doi.org/10.1155/2021/9926128.
Texto completoKappel, Kalli y Rhiju Das. "Sampling Native-like Structures of RNA-Protein Complexes through Rosetta Folding and Docking". Structure 27, n.º 1 (enero de 2019): 140–51. http://dx.doi.org/10.1016/j.str.2018.10.001.
Texto completoThakur, Priti, Jowad Atway, Patrick A. Limbach y Balasubrahmanyam Addepalli. "RNA Cleavage Properties of Nucleobase-Specific RNase MC1 and Cusativin Are Determined by the Dinucleotide-Binding Interactions in the Enzyme-Active Site". International Journal of Molecular Sciences 23, n.º 13 (24 de junio de 2022): 7021. http://dx.doi.org/10.3390/ijms23137021.
Texto completoEbenezer, Oluwakemi, Nkululeko Damoyi, Maryam A. Jordaan y Michael Shapi. "Unveiling of Pyrimidindinones as Potential Anti-Norovirus Agents—A Pharmacoinformatic-Based Approach". Molecules 27, n.º 2 (7 de enero de 2022): 380. http://dx.doi.org/10.3390/molecules27020380.
Texto completoHe, Jiahua, Jun Wang, Huanyu Tao, Yi Xiao y Sheng-You Huang. "HNADOCK: a nucleic acid docking server for modeling RNA/DNA–RNA/DNA 3D complex structures". Nucleic Acids Research 47, W1 (22 de mayo de 2019): W35—W42. http://dx.doi.org/10.1093/nar/gkz412.
Texto completoAdasme, Melissa F., Katja L. Linnemann, Sarah Naomi Bolz, Florian Kaiser, Sebastian Salentin, V. Joachim Haupt y Michael Schroeder. "PLIP 2021: expanding the scope of the protein–ligand interaction profiler to DNA and RNA". Nucleic Acids Research 49, W1 (5 de mayo de 2021): W530—W534. http://dx.doi.org/10.1093/nar/gkab294.
Texto completoNAWAZ, A. y B. IJAZ. "ANTIVIRAL SCREENING OF AZADIRACHTA INDICA PHYTOCHEMICALS AS DENGUE NS5 INHIBITOR: A MOLECULAR DOCKING APPROACH". Biological and Clinical Sciences Research Journal 2023, n.º 1 (27 de noviembre de 2023): 560. http://dx.doi.org/10.54112/bcsrj.v2023i1.560.
Texto completoYIP, Ryan Pak Hong, Doris Ching Ying Kwok, Louis Tung Faat Lai, Siu-Ming Ho, Ivan Chun Kit Wong, Chi-Ping Chan, Wilson Chun Yu Lau y Jacky Chi Ki Ngo. "SRPK2 Mediates HBV Core Protein Phosphorylation and Capsid Assembly via Docking Interaction". PLOS Pathogens 20, n.º 2 (7 de febrero de 2024): e1011978. http://dx.doi.org/10.1371/journal.ppat.1011978.
Texto completoDickerhoff, Jonathan, Kassandra R. Warnecke, Kaibo Wang, Nanjie Deng y Danzhou Yang. "Evaluating Molecular Docking Software for Small Molecule Binding to G-Quadruplex DNA". International Journal of Molecular Sciences 22, n.º 19 (6 de octubre de 2021): 10801. http://dx.doi.org/10.3390/ijms221910801.
Texto completoLi, Gang, Wei Zhou, Xiurong Zhao y Ying Xie. "In Silico Molecular Docking and Interaction Analysis of Traditional Chinese Medicines Against SARS-CoV-2 Receptor". Natural Product Communications 16, n.º 5 (mayo de 2021): 1934578X2110150. http://dx.doi.org/10.1177/1934578x211015030.
Texto completoSharma, Arun Dev y Inderjeet Kaur. "Targeting H3N2 Influenza Virus RNA-dependent RNA Polymerase by Using Bioactives from Essential Oils from Eucalyptus polybrachtea, Cymbopogon citratus and Cymbopogon khasianus". Biology, Medicine, & Natural Product Chemistry 12, n.º 2 (15 de septiembre de 2023): 515–24. http://dx.doi.org/10.14421/biomedich.2023.122.515-524.
Texto completoMustafa, Ghulam, Hafiza Salaha Mahrosh, Mahwish Salman, Muhammad Ali, Rawaba Arif, Sibtain Ahmed y Hossam Ebaid. "In Silico Analysis of Honey Bee Peptides as Potential Inhibitors of Capripoxvirus DNA-Directed RNA Polymerase". Animals 13, n.º 14 (12 de julio de 2023): 2281. http://dx.doi.org/10.3390/ani13142281.
Texto completoDawood, Ali A. "Influence of SARS-CoV-2 variants’ spike glycoprotein and RNA-dependent RNA polymerase (nsp12) mutations on remdesivir docking residues". Medical Immunology (Russia) 24, n.º 3 (13 de julio de 2022): 617–28. http://dx.doi.org/10.15789/1563-0625-ios-2486.
Texto completoBui, Thanh Tung, Bao Kim Nguyen, Minh Ngoc Le, The Toan Nguyen y The Hai Pham. "In silico screening of drug inhibitors of SARS-CoV-2RNA-dependent RNA polymerase target". Ministry of Science and Technology, Vietnam 63, n.º 4 (15 de diciembre de 2021): 47–54. http://dx.doi.org/10.31276/vjste.63(4).47-54.
Texto completoYamkela, Mthembu, Zingisa Sitobo y Xolani H. Makhoba. "In Silico Analysis of SARS-CoV-2 Non-Structural Proteins Reveals an Interaction with the Host’s Heat Shock Proteins That May Contribute to Viral Replications and Development". Current Issues in Molecular Biology 45, n.º 12 (18 de diciembre de 2023): 10225–47. http://dx.doi.org/10.3390/cimb45120638.
Texto completoWang Erickson, Anna F., Padraig Deighan, Shanshan Chen, Kelsey Barrasso, Cinthia P. Garcia, Santiago Martínez‐Lumbreras, Caterina Alfano et al. "A novel RNA polymerase‐binding protein that interacts with a sigma‐factor docking site". Molecular Microbiology 105, n.º 4 (19 de junio de 2017): 652–62. http://dx.doi.org/10.1111/mmi.13724.
Texto completoPérez-Cano, Laura, Brian Jiménez-García y Juan Fernández-Recio. "A protein-RNA docking benchmark (II): Extended set from experimental and homology modeling data". Proteins: Structure, Function, and Bioinformatics 80, n.º 7 (8 de mayo de 2012): 1872–82. http://dx.doi.org/10.1002/prot.24075.
Texto completoLee, Gwangho, Gun Hyuk Jang, Ho Young Kang y Giltae Song. "Predicting aptamer sequences that interact with target proteins using an aptamer-protein interaction classifier and a Monte Carlo tree search approach". PLOS ONE 16, n.º 6 (25 de junio de 2021): e0253760. http://dx.doi.org/10.1371/journal.pone.0253760.
Texto completoRen, Yixin, Sihui Long y Shuang Cao. "Molecular Docking and Virtual Screening of an Influenza Virus Inhibitor That Disrupts Protein–Protein Interactions". Viruses 13, n.º 11 (5 de noviembre de 2021): 2229. http://dx.doi.org/10.3390/v13112229.
Texto completoPraveen, Rajkumar. "Insights from the molecular docking aided interaction analysis of HfQ with small RNAs". Bioinformation 18, n.º 4 (30 de abril de 2022): 425–31. http://dx.doi.org/10.6026/97320630018425.
Texto completoSharp, Kumar. "Alternatives to Remdesivir: Drug repurposing for inhibition of SARS-CoV2 RNA dependent RNA polymerase". Journal of Pharmacological and Pharmaceutical Research 1, n.º 1 (2024): 32. http://dx.doi.org/10.5455/jppr.20240402024133.
Texto completoAbdelaal Ahmed Mahmoud M. Alkhatip, Ahmed, Michail Georgakis, Lucio R. Montero Valenzuela, Mohamed Hamza, Ehab Farag, Jaqui Hodgkinson, Hisham Hosny et al. "Metal-Bound Methisazone; Novel Drugs Targeting Prophylaxis and Treatment of SARS-CoV-2, a Molecular Docking Study". International Journal of Molecular Sciences 22, n.º 6 (15 de marzo de 2021): 2977. http://dx.doi.org/10.3390/ijms22062977.
Texto completoIvan, Jeremias, Rizky Nurdiansyah y Arli Aditya Parikesit. "Computational modeling of AGO-mediated molecular inhibition of ARF6 by miR-145". Indonesian Journal of Biotechnology 25, n.º 2 (2 de diciembre de 2020): 102. http://dx.doi.org/10.22146/ijbiotech.55631.
Texto completoRehman, Muhammad Fayyaz ur, Shahzaib Akhter, Aima Iram Batool, Zeliha Selamoglu, Mustafa Sevindik, Rida Eman, Muhammad Mustaqeem et al. "Effectiveness of Natural Antioxidants against SARS-CoV-2? Insights from the In-Silico World". Antibiotics 10, n.º 8 (20 de agosto de 2021): 1011. http://dx.doi.org/10.3390/antibiotics10081011.
Texto completoSantiago-Frangos, Andrew, Kathrin S. Fröhlich, Jeliazko R. Jeliazkov, Ewelina M. Małecka, Giada Marino, Jeffrey J. Gray, Ben F. Luisi, Sarah A. Woodson y Steven W. Hardwick. "Caulobacter crescentus Hfq structure reveals a conserved mechanism of RNA annealing regulation". Proceedings of the National Academy of Sciences 116, n.º 22 (10 de mayo de 2019): 10978–87. http://dx.doi.org/10.1073/pnas.1814428116.
Texto completoPrabahar, Archana, Subashini Swaminathan, Arul Loganathan y Ramalingam Jegadeesan. "Identification of Novel Inhibitors for Tobacco Mosaic Virus Infection in Solanaceae Plants". Advances in Bioinformatics 2015 (18 de octubre de 2015): 1–9. http://dx.doi.org/10.1155/2015/198214.
Texto completoSari, Dewi Ratih Tirto, Heny Yusuf, Laily Sifaiyah, Nur Dina Camelia y Yohanes Bare. "Kajian Farmakoinformatika Senyawa Brazilin dan 3-O-Methyl Brazilin Caesalpinia sappan Sebagai Terapi Demam Berdarah Dengue". al-Kimiya 9, n.º 1 (1 de julio de 2022): 19–25. http://dx.doi.org/10.15575/ak.v9i1.17613.
Texto completoAlhossary, Amr, Yaw Awuni, Chee Keong Kwoh y Yuguang Mu. "Proposing drug fragments for dengue virus NS5 protein". Journal of Bioinformatics and Computational Biology 16, n.º 03 (junio de 2018): 1840017. http://dx.doi.org/10.1142/s0219720018400176.
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