Artículos de revistas sobre el tema "Oxford Nanopore sequencing"
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Heikema, Astrid P., Deborah Horst-Kreft, Stefan A. Boers, Rick Jansen, Saskia D. Hiltemann, Willem de Koning, Robert Kraaij et al. "Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota". Genes 11, n.º 9 (21 de septiembre de 2020): 1105. http://dx.doi.org/10.3390/genes11091105.
Texto completoLin, Bo, Jianan Hui y Hongju Mao. "Nanopore Technology and Its Applications in Gene Sequencing". Biosensors 11, n.º 7 (30 de junio de 2021): 214. http://dx.doi.org/10.3390/bios11070214.
Texto completoLu, Hengyun, Francesca Giordano y Zemin Ning. "Oxford Nanopore MinION Sequencing and Genome Assembly". Genomics, Proteomics & Bioinformatics 14, n.º 5 (octubre de 2016): 265–79. http://dx.doi.org/10.1016/j.gpb.2016.05.004.
Texto completoEisenstein, Michael. "Oxford Nanopore announcement sets sequencing sector abuzz". Nature Biotechnology 30, n.º 4 (abril de 2012): 295–96. http://dx.doi.org/10.1038/nbt0412-295.
Texto completoSereika, Mantas, Rasmus Hansen Kirkegaard, Søren Michael Karst, Thomas Yssing Michaelsen, Emil Aarre Sørensen, Rasmus Dam Wollenberg y Mads Albertsen. "Oxford Nanopore R10.4 long-read sequencing enables the generation of near-finished bacterial genomes from pure cultures and metagenomes without short-read or reference polishing". Nature Methods 19, n.º 7 (julio de 2022): 823–26. http://dx.doi.org/10.1038/s41592-022-01539-7.
Texto completoMacKenzie, Morgan y Christos Argyropoulos. "An Introduction to Nanopore Sequencing: Past, Present, and Future Considerations". Micromachines 14, n.º 2 (16 de febrero de 2023): 459. http://dx.doi.org/10.3390/mi14020459.
Texto completoСалахов, Р. Р., М. В. Голубенко, Е. Н. Павлюкова, А. В. Марков, Н. П. Бабушкина, А. Ф. Канев, Н. Р. Валиахметов y М. С. Назаренко. "Application of monomolecular sequencing technology to the diagnostics of hypertrophic cardiomyopathy". Nauchno-prakticheskii zhurnal «Medicinskaia genetika», n.º 5(214) (29 de mayo de 2020): 9–10. http://dx.doi.org/10.25557/2073-7998.2020.05.9-10.
Texto completoBurns, Adam, David Robert Bruce, Pauline Robbe, Adele Timbs, Basile Stamatopoulos, Ruth Clifford, Maria Lopopolo, Duncan Parkes, Kate E. Ridout y Anna Schuh. "Detection of Clinically Relevant Molecular Alterations in Chronic Lymphocytic Leukemia (CLL) By Nanopore Sequencing". Blood 132, Supplement 1 (29 de noviembre de 2018): 1847. http://dx.doi.org/10.1182/blood-2018-99-110948.
Texto completoDumschott, Kathryn, Maximilian H.-W. Schmidt, Harmeet Singh Chawla, Rod Snowdon y Björn Usadel. "Oxford Nanopore sequencing: new opportunities for plant genomics?" Journal of Experimental Botany 71, n.º 18 (27 de mayo de 2020): 5313–22. http://dx.doi.org/10.1093/jxb/eraa263.
Texto completoLeger, Adrien y Tommaso Leonardi. "pycoQC, interactive quality control for Oxford Nanopore Sequencing". Journal of Open Source Software 4, n.º 34 (28 de febrero de 2019): 1236. http://dx.doi.org/10.21105/joss.01236.
Texto completoChen, Weigang, Peng Zhang, Lifu Song, Jinsheng Yang y Changcai Han. "Simulation of Nanopore Sequencing Signals Based on BiGRU". Sensors 20, n.º 24 (17 de diciembre de 2020): 7244. http://dx.doi.org/10.3390/s20247244.
Texto completoCzmil, Anna, Michal Wronski, Sylwester Czmil, Marta Sochacka-Pietal, Michal Cmil, Jan Gawor, Tomasz Wołkowicz, Dariusz Plewczynski, Dominik Strzalka y Michal Pietal. "NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology". PeerJ 10 (29 de marzo de 2022): e13056. http://dx.doi.org/10.7717/peerj.13056.
Texto completoLamb, Harrison J., Ben J. Hayes, Loan T. Nguyen y Elizabeth M. Ross. "The Future of Livestock Management: A Review of Real-Time Portable Sequencing Applied to Livestock". Genes 11, n.º 12 (9 de diciembre de 2020): 1478. http://dx.doi.org/10.3390/genes11121478.
Texto completoLoman, Nick, Sarah Goodwin, Hans J. Jansen y Matt Loose. "A disruptive sequencer meets disruptive publishing". F1000Research 4 (15 de octubre de 2015): 1074. http://dx.doi.org/10.12688/f1000research.7229.1.
Texto completoZhao, Kaishun, Chunlin Tu, Wei Chen, Haiying Liang, Wenjing Zhang, Yilei Wang, Ye Jin et al. "Rapid Identification of Drug-Resistant Tuberculosis Genes Using Direct PCR Amplification and Oxford Nanopore Technology Sequencing". Canadian Journal of Infectious Diseases and Medical Microbiology 2022 (28 de marzo de 2022): 1–8. http://dx.doi.org/10.1155/2022/7588033.
Texto completoTytgat, Olivier, Yannick Gansemans, Jana Weymaere, Kaat Rubben, Dieter Deforce y Filip Van Nieuwerburgh. "Nanopore Sequencing of a Forensic STR Multiplex Reveals Loci Suitable for Single-Contributor STR Profiling". Genes 11, n.º 4 (1 de abril de 2020): 381. http://dx.doi.org/10.3390/genes11040381.
Texto completoKinimi, Edson, Mana Mahapatra, Tebogo Kgotlele, Mariam R. Makange, Chandana Tennakoon, Felix Njeumi, Steven Odongo et al. "Complete Genome Sequencing of Field Isolates of Peste des Petits Ruminants Virus from Tanzania Revealed a High Nucleotide Identity with Lineage III PPR Viruses". Animals 11, n.º 10 (15 de octubre de 2021): 2976. http://dx.doi.org/10.3390/ani11102976.
Texto completoChen, Zhao, David L. Erickson y Jianghong Meng. "Benchmarking Long-Read Assemblers for Genomic Analyses of Bacterial Pathogens Using Oxford Nanopore Sequencing". International Journal of Molecular Sciences 21, n.º 23 (1 de diciembre de 2020): 9161. http://dx.doi.org/10.3390/ijms21239161.
Texto completoLiem, Michael, Hans J. Jansen, Ron P. Dirks, Christiaan V. Henkel, G. Paul H. van Heusden, Richard J. L. F. Lemmers, Trifa Omer, Shuai Shao, Peter J. Punt y Herman P. Spaink. "De novo whole-genome assembly of a wild type yeast isolate using nanopore sequencing". F1000Research 6 (3 de agosto de 2018): 618. http://dx.doi.org/10.12688/f1000research.11146.2.
Texto completoChalapati, Sachin, Conor A. Crosbie, Dixita Limbachiya y Nimesh Pinnamaneni. "Direct oligonucleotide sequencing with nanopores". Open Research Europe 1 (24 de agosto de 2021): 47. http://dx.doi.org/10.12688/openreseurope.13578.2.
Texto completoChalapati, Sachin, Conor A. Crosbie, Dixita Limbachiya y Nimesh Pinnamaneni. "Direct oligonucleotide sequencing with nanopores". Open Research Europe 1 (12 de mayo de 2021): 47. http://dx.doi.org/10.12688/openreseurope.13578.1.
Texto completoDiubo, Yulia V., Artur E. Akhremchuk, Leonid N. Valentovich y Yevgeny A. Nikolaichik. "Restriction-modification systems and DNA methylation profile of Pectobacterium carotovorum 2A". Journal of the Belarusian State University. Biology, n.º 3 (4 de noviembre de 2021): 71–77. http://dx.doi.org/10.33581/2521-1722-2021-3-71-77.
Texto completoDu, Chenghao. "The Power of Using Novel Nanopore Sequencing Technology for Diagnosis, Genomic and Pathological Studies of Covid-19". E3S Web of Conferences 271 (2021): 04024. http://dx.doi.org/10.1051/e3sconf/202127104024.
Texto completoDu, Chenghao. "The Power of Using Novel Nanopore Sequencing Technology for Diagnosis, Genomic and Pathological Studies of Covid-19". South Florida Journal of Development 2, n.º 3 (8 de julio de 2021): 4014–28. http://dx.doi.org/10.46932/sfjdv2n3-017.
Texto completoDeynichenko, K. A., K. G. Ptitsyn, S. P. Radko, L. K. Kurbatov, I. V. Vakhrushev, I. V. Buromski, S. S. Markin, A. I. Archakov, A. V. Lisitsa y E. A. Ponomarenko. "Splice variants of mRNA of cytochrome P450 genes: analysis by the nanopore sequencing method in human liver tissue and HepG2 cell line". Biomeditsinskaya Khimiya 68, n.º 2 (2022): 117–25. http://dx.doi.org/10.18097/pbmc20226802117.
Texto completoTanaka, Mami, Sayaka Mino, Yoshitoshi Ogura, Tetsuya Hayashi y Tomoo Sawabe. "Availability of Nanopore sequences in the genome taxonomy for Vibrionaceae systematics: Rumoiensis clade species as a test case". PeerJ 6 (18 de junio de 2018): e5018. http://dx.doi.org/10.7717/peerj.5018.
Texto completoRadko, S. P., L. K. Kurbatov, K. G. Ptitsyn, Y. Y. Kiseleva, E. A. Ponomarenko, A. V. Lisitsa y A. I. Archakov. "Prospects for the use of third generation sequencers for quantitative profiling of transcriptome". Biomedical Chemistry: Research and Methods 1, n.º 4 (2018): e00086. http://dx.doi.org/10.18097/bmcrm00086.
Texto completoDe Coster, Wouter, Endre Bakken Stovner y Mojca Strazisar. "Methplotlib: analysis of modified nucleotides from nanopore sequencing". Bioinformatics 36, n.º 10 (13 de febrero de 2020): 3236–38. http://dx.doi.org/10.1093/bioinformatics/btaa093.
Texto completoIl Jun, Kang, Jangsup Moon, Taek Soo Kim, Chang Kyung Kang, Song Mi Moon, Kyoung-Ho Song, Pyoeng Gyun Choe et al. "238. Direct identification of Bacterial Species with MinION Nanopore Sequencer In Clinical Specimens Suspected of Polybacterial Infection". Open Forum Infectious Diseases 6, Supplement_2 (octubre de 2019): S136. http://dx.doi.org/10.1093/ofid/ofz360.313.
Texto completoJansen, Hans J., Ron P. Dirks, Michael Liem, Christiaan V. Henkel, G. Paul H. van Heusden, Richard J. L. F. Lemmers, Trifa Omer, Shuai Shao, Peter J. Punt y Herman P. Spaink. "De novo whole-genome assembly of a wild type yeast isolate using nanopore sequencing". F1000Research 6 (3 de mayo de 2017): 618. http://dx.doi.org/10.12688/f1000research.11146.1.
Texto completoMorsli, Madjid, Quentin Kerharo, Jeremy Delerce, Pierre-Hugues Roche, Lucas Troude y Michel Drancourt. "Haemophilus influenzae Meningitis Direct Diagnosis by Metagenomic Next-Generation Sequencing: A Case Report". Pathogens 10, n.º 4 (12 de abril de 2021): 461. http://dx.doi.org/10.3390/pathogens10040461.
Texto completoDavid, Matei, L. J. Dursi, Delia Yao, Paul C. Boutros y Jared T. Simpson. "Nanocall: an open source basecaller for Oxford Nanopore sequencing data". Bioinformatics 33, n.º 1 (10 de septiembre de 2016): 49–55. http://dx.doi.org/10.1093/bioinformatics/btw569.
Texto completoDing, Hongxu, Andrew D. Bailey, Miten Jain, Hugh Olsen y Benedict Paten. "Gaussian mixture model-based unsupervised nucleotide modification number detection using nanopore-sequencing readouts". Bioinformatics 36, n.º 19 (29 de junio de 2020): 4928–34. http://dx.doi.org/10.1093/bioinformatics/btaa601.
Texto completoSalakhov, R. R., M. V. Golubenko, E. N. Pavlukova, A. N. Kucher, N. P. Babushkina, N. R. Valiahmetov, A. V. Markov, E. O. Belyaeva, A. F. Kanev y M. S. Nazarenko. "Experience in genetic testing of hypertrophic cardiomyopathy using nanopore DNA sequencing". Russian Journal of Cardiology 26, n.º 10 (22 de noviembre de 2021): 4673. http://dx.doi.org/10.15829/1560-4071-2021-4673.
Texto completoFukasawa, Yoshinori, Luca Ermini, Hai Wang, Karen Carty y Min-Sin Cheung. "LongQC: A Quality Control Tool for Third Generation Sequencing Long Read Data". G3: Genes|Genomes|Genetics 10, n.º 4 (10 de febrero de 2020): 1193–96. http://dx.doi.org/10.1534/g3.119.400864.
Texto completoNoone, J. Christopher, Karin Helmersen, Truls Michael Leegaard, Inge Skråmm y Hege Vangstein Aamot. "Rapid Diagnostics of Orthopaedic-Implant-Associated Infections Using Nanopore Shotgun Metagenomic Sequencing on Tissue Biopsies". Microorganisms 9, n.º 1 (4 de enero de 2021): 97. http://dx.doi.org/10.3390/microorganisms9010097.
Texto completoChen, Zhiao y Xianghuo He. "Application of third-generation sequencing in cancer research". Medical Review 1, n.º 2 (21 de octubre de 2021): 150–71. http://dx.doi.org/10.1515/mr-2021-0013.
Texto completoIstace, Benjamin, Caroline Belser, Cyril Falentin, Karine Labadie, Franz Boideau, Gwenaëlle Deniot, Loeiz Maillet et al. "Sequencing and Chromosome-Scale Assembly of Plant Genomes, Brassica rapa as a Use Case". Biology 10, n.º 8 (30 de julio de 2021): 732. http://dx.doi.org/10.3390/biology10080732.
Texto completode Siqueira, Guilherme Marcelino Viana, Felipe Marcelo Pereira-dos-Santos, Rafael Silva-Rocha y María-Eugenia Guazzaroni. "Nanopore Sequencing Provides Rapid and Reliable Insight Into Microbial Profiles of Intensive Care Units". Frontiers in Public Health 9 (27 de agosto de 2021). http://dx.doi.org/10.3389/fpubh.2021.710985.
Texto completoNeumann, Don, Anireddy S. N. Reddy y Asa Ben-Hur. "RODAN: a fully convolutional architecture for basecalling nanopore RNA sequencing data". BMC Bioinformatics 23, n.º 1 (20 de abril de 2022). http://dx.doi.org/10.1186/s12859-022-04686-y.
Texto completoSilvestre-Ryan, Jordi y Ian Holmes. "Pair consensus decoding improves accuracy of neural network basecallers for nanopore sequencing". Genome Biology 22, n.º 1 (19 de enero de 2021). http://dx.doi.org/10.1186/s13059-020-02255-1.
Texto completoQi, Weihong, Andrea Colarusso, Miriam Olombrada, Ermenegilda Parrilli, Andrea Patrignani, Maria Luisa Tutino y Macarena Toll-Riera. "New insights on Pseudoalteromonas haloplanktis TAC125 genome organization and benchmarks of genome assembly applications using next and third generation sequencing technologies". Scientific Reports 9, n.º 1 (11 de noviembre de 2019). http://dx.doi.org/10.1038/s41598-019-52832-z.
Texto completoSun, Kai, Yi Liu, Xin Zhou, Chuanlin Yin, Pengjun Zhang, Qianqian Yang, Lingfeng Mao, Xuping Shentu y Xiaoping Yu. "Nanopore sequencing technology and its application in plant virus diagnostics". Frontiers in Microbiology 13 (25 de julio de 2022). http://dx.doi.org/10.3389/fmicb.2022.939666.
Texto completoLiu, Yang, Wojciech Rosikiewicz, Ziwei Pan, Nathaniel Jillette, Ping Wang, Aziz Taghbalout, Jonathan Foox et al. "DNA methylation-calling tools for Oxford Nanopore sequencing: a survey and human epigenome-wide evaluation". Genome Biology 22, n.º 1 (18 de octubre de 2021). http://dx.doi.org/10.1186/s13059-021-02510-z.
Texto completoRiaz, Nasir, Preston Leung, Kirston Barton, Martin A. Smith, Shaun Carswell, Rowena Bull, Andrew R. Lloyd y Chaturaka Rodrigo. "Adaptation of Oxford Nanopore technology for hepatitis C whole genome sequencing and identification of within-host viral variants". BMC Genomics 22, n.º 1 (2 de marzo de 2021). http://dx.doi.org/10.1186/s12864-021-07460-1.
Texto completoKerkhof, Lee J. "Is Oxford Nanopore sequencing ready for analyzing complex microbiomes?" FEMS Microbiology Ecology 97, n.º 3 (14 de enero de 2021). http://dx.doi.org/10.1093/femsec/fiab001.
Texto completoGoodwin, Sara, Robert Wappel y W. Richard McCombie. "1D Genome Sequencing on the Oxford Nanopore MinION". Current Protocols in Human Genetics 94, n.º 1 (julio de 2017). http://dx.doi.org/10.1002/cphg.39.
Texto completoJain, Miten, Hugh E. Olsen, Benedict Paten y Mark Akeson. "The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community". Genome Biology 17, n.º 1 (25 de noviembre de 2016). http://dx.doi.org/10.1186/s13059-016-1103-0.
Texto completoSultan, Madiha y Anastassia Kanavarioti. "Nanopore device-based fingerprinting of RNA oligos and microRNAs enhanced with an Osmium tag". Scientific Reports 9, n.º 1 (2 de octubre de 2019). http://dx.doi.org/10.1038/s41598-019-50459-8.
Texto completoPrall, Trent M., Emma K. Neumann, Julie A. Karl, Cecilia G. Shortreed, David A. Baker, Hailey E. Bussan, Roger W. Wiseman y David H. O’Connor. "Consistent ultra-long DNA sequencing with automated slow pipetting". BMC Genomics 22, n.º 1 (12 de marzo de 2021). http://dx.doi.org/10.1186/s12864-021-07500-w.
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