Tesis sobre el tema "Nonlinear optical microscopies"

The physical processes shaping laser plasma dynamics take place on length scales ranging from the microscopic (1 ångström) to the macroscopic realms (µm). Microscopic field fluctuations due to the motions of individual plasma charges evolve on an atomic scale. Collisional effects influencing thermalization and ionization processes depend on the plasma fields on an atomic level. Simultaneously, collective processes such as plasma oscillations take place on a mesoscopic length scale of many-nm. The macroscopic realm is ultimately determined by the laser which typically spans hundreds of nm to a few µm. Consequently, ab-initio modelling of laser plasma dynamics requires the resolution of length scales from 1Å to multiple µm. As such, in order to bridge the microscopic and macroscopic length scales of light-matter interaction, in is necessary to account for the individual motions of up to ~10^11 particles. This is a not an insignificant undertaking. Until recently, approaches to numerical modelling of light-matter interactions were limited to MD and PIC, each with their own limitations. MicPIC has been developed to fill the gap left by MD and PIC but so far has not been adapted for scalable parallel processing on large distributed memory machines. Thus, its full potential was not able to be fully realized until now. This thesis presents the massively parallel MicPIC method capable of bridging the micro- and macroscopic realms. A wide range of applications that have heretofore not been accessible to theory or, at best, had limited applicability are now open for thorough investigation. Among these are nonlinear nanophotonics, quantum nanophotonics, laser machining, ab-initio dynamics of strongly coupled plasmas, high-harmonic generation, electron and x-ray sources, and optical switching. Two of the first applications of parallel MicPIC to a selection of such problems are shown and discussed below, demonstrating the applicability of the method to a wide variety of newly accessible strong field laser-plasma physics phenomena.

In recent years, second harmonic generation (SHG) microscopy has revolutionised the field of biological imaging by offering a new means of visualising the fine structures of collagen tissues with excellent image penetration while minimising photodamage. This project involves the design and construction of a SHG microscope that is built around a compact femtosecond fibre laser for collagen imaging. Operating at 1032 nm, the microscope has demonstrated a penetration depth of beyond 320 microns in collagen, which is considerably superior to depths of 250 to 300 microns achievable with a conventional SHG microscope coupled to a Ti:sapphire excitation laser. The imaging characteristics of the microscope have been tested with a modified sample of bovine pericardium. The results indicate the microscope is polarisation-sensitive to the tissue structure and is capable to detecting signal changes at 10 μm resolution. This thesis will describe in detail, to our best knowledge, the first SHG microscope equipped with a compact and robust all-fibre femtosecond 1032 nm laser source.

Dans cette thèse, nous proposons l'utilisation d'un nouveau type de fibre à cristal photonique, la fibre Kagomé à coeur creux, pour la livraison d'impulsions ultra-courtes en endoscopie non linéaire. Ces fibres permettent la livraison d'impulsions sans distorsion sur une large bande spectrale, avec un faible bruit de fond, grâce à la propagation dans le cœur creux. Nous avons résolu le problème de la résolution spatiale, à l'aide d'une microbille en silice, insérée dans le cœur de la fibre Kagomé. Nous avons développé un système d'imagerie compacte, qui utilise un tube piézo-électrique pour le balayage du faisceau, un système achromatiques de microlentilles et une fibre Kagomé double gaine, spécialement conçue pour l'endoscopie. Avec ce système, nous avons réussi à imager des tissus biologiques, à l'extrémité distale de la fibre (endoscopie), en utilisant des différentes techniques tels que TPEF, SHG et CARS, un résultat qui ne trouve pas d'égal dans la littérature actuelle. L'intégration dans une sonde portable (4,2 mm de diamètre) montre le potentiel de ce système pour de futures applications en endoscopie multimodale in-vivo
In this thesis, we propose the use of a novel type of photonic crystal fiber, the Kagomé lattice hollow core fiber, for the delivery of ultra-short pulses in nonlinear endoscopy. These fibers allow undistorted pulse delivery, over a broad transmission window, with minimum background signal generated in the fiber, thanks to the propagation in a hollow-core. We solved the problem of spatial resolution, by means of a silica micro-bead inserted in the Kagomé fiber large core. We have developed a miniature imaging system, based on a piezo-electric tube scanner, an achromatic micro-lenses assembly and a specifically designed Kagomé double-clad fiber. With this system we were able to image biological tissues, in endoscope modality, activating different contrasts such as TPEF, SHG and CARS, at the distal end of the fiber, a result which finds no equal in current literature. The integration in a portable probe (4.2 mm in diameter) shows the potential of this system for future in-vivo multimodal endoscopy

Les sources de paires de photons corrélés sont des composants clés nécessaires aux réseaux de télécommunications quantiques. Réaliser directement ces sources à partir de fibres optiques permet de minimiser les pertes d'insertion. Nous proposons de concevoir une telle source à partir d'une fibre optique étirée. La fibre étirée possède un diamètre pouvant descendre à moins de 500 nm sur une longueur de quelques centimètres. Le faible diamètre de la section étirée favorise les effets non linéaires, tandis que les sections non étirées permettent de connecter avec de très faibles pertes cette fibre étirée avec les fibres des réseaux de télécommunication.Dans cette thèse, nous présentons donc une conception d’une nouvelle source de photons corrélés totalement fibrée à base de fibres standard de télécommunications (SMF28) étirées. Pour produire ces paires de photons nous utiliserons la fluorescence paramétrique due à la brisure de symétrie à la surface de la nanofibre en silice.Nous avons développé une technique de mesure par microscopie optique, qui permet de mesurer tout le profil de la fibre étirée avec une résolution nanométrique bien au-delà de la limite de diffraction.En parallèle, nous avons modélisé la susceptibilité non linéaire de surface de second ordre en prenant en compte l’aspect vectoriel de la propagation du champ optique dans une microfibre à deux ou trois couches. Dans un second temps, nous définissons les accords de phase modaux qui sont nécessaires pour l’obtention d’une forte fluorescence paramétrique. Nous dimensionnons cette nanofibre pour une bonne optimisation de l’efficacité de génération des paires. L'ensemble du processus de création de photons sera modélisé
Sources of correlated photon pairs are key components required for quantum telecommunications networks. Implementing these sources directly with optical fibers minimizes the insertion losses. We propose to design such a source from a tapered optical fiber.The tapered fiber has a diameter lower than 500 nm over a length of a few centimeters. The small diameter of the tapered section favors the non-linear effects, while the unstretched sections make it possible to connect this tapered fiber with the fibers of the telecommunication networks with very low losses.In this thesis, we present a design of a new source, fully fibered of correlated photons based on standard telecommunications tapered fibers (SMF28). To produce these pairs of photons we will use the parametric fluorescence due to symmetry breaking at the surface of a silica nanofiber.We have developed an optical microscopy measurement technique to measure all the profile of tapered fibers with nanometer resolution far beyond the diffraction limit.In parallel, we modeled the second-order nonlinear surface susceptibility by taking into account the vector aspect of the propagation of the optical field in a two or three-layered microfiber. In a second step, we define modal phase matchings that are necessary to obtain a strong parametric fluorescence. We size this nanofiber for a good optimization of pairs generation efficiency. The entire process of photon creation will be modeled

Microscopy techniques have been developed and refined over multiple decades, but innovation around single photon modalities has slowed. The advancement of the utility of information acquired, and minimum resolution available is seemingly reaching an asymptote. The fusion of light microscopy and well-studied nonlinear processes has broken through this barrier and enabled the collection of vast amounts of additional information beyond the topographical information relayed by traditional microscopes. Through nonlinear imaging modalities, chemical information can also be extracted from tissue. Nonlinear microscopy also can beat the resolution limit caused by diffraction, and offers up three-dimensional capabilities. The power of nonlinear imaging has been demonstrated by countless research groups, solidifying it as a major player in biomedical imaging. The value of a nonlinear imaging system could be enhanced if a reduction in size would permit the insertion into bodily cavities, as has been demonstrated by linear imaging endoscopes. The miniaturization of single photon imaging devices has led to significant advancements in diagnostics and treatment in the medical field. Much more information can be extracted from a patient if the tissue can be imaged in vivo, a capability that traditional, bulky, table top microscopes cannot offer. The development of new technologies in optics has enabled the miniaturization of many critical components of standard microscopes. It is possible to combine nonlinear techniques with these miniaturized elements into a portable, hand held microscope that can be applied to various facets of the biomedical field. The research demonstrated in this thesis is based on the selection, testing and assembly of several miniaturized optical components for use as a nonlinear imaging device. This thesis is the first demonstration of a fibre delivered, microelectromechanical systems mirror with miniaturized optics housed in a portable, hand held package. Specifically, it is designed for coherent anti-Stokes Raman scattering, second harmonic generation, and two-photon excitation fluorescence imaging. Depending on the modality being exploited, different chemical information can be extracted from the sample being imaged. This miniaturized microscope can be applied to diagnostics and treatments of spinal cord diseases and injuries, atherosclerosis research, cancer tumour identification and a plethora of other biomedical applications. The device that will be revealed in the upcoming text is validated by demonstrating all designed-for nonlinear modalities, and later will be used to perform serialized imaging of myelin of a single specimen over time.

Traditional light microscopy suffers from the diffraction limit, which limits the spatial resolution to λ/2. The current trend in optical microscopy is the development of techniques to bypass the diffraction limit. Resolutions below 40 nm will make it possible to probe biological systems by imaging the interactions between single molecules and cell membranes. These resolutions will allow for the development of improved drug delivery mechanisms by increasing our understanding of how chemical communication within a cell occurs. The materials sciences would also benefit from these high resolutions. Nanomaterials can be analyzed with Raman spectroscopy for molecular and atomic bond information, or with fluorescence response to determine bulk optical properties with tens of nanometer resolution. Near-field optical microscopy is one of the current techniques, which allows for imaging at resolutions beyond the diffraction limit. Using a combination of a shear force microscope (SFM) and an inverted optical microscope, spectroscopic resolutions below 20 nm have been demonstrated. One technique, in particular, has been named tip enhanced near-field optical microscopy (TENOM). The key to this technique is the use of solid metal probes, which are illuminated in the far field by the excitation wavelength of interest. These probes are custom-designed using finite difference time domain (FDTD) modeling techniques, then fabricated with the use of a focused ion beam (FIB) microscope. The measure of the quality of probe design is based directly on the field enhancement obtainable. The greater the field enhancement of the probe, the more the ratio of near-field to far-field background contribution will increase. The elimination of the far-field signal by a decrease of illumination power will provide the best signal-to-noise ratio in the near-field images. Furthermore, a design that facilitates the delocalization of the near-field imaging from the far-field will be beneficial. Developed is a novel microscope design that employs two-photon non-linear excitation to allow the imaging of the fluorescence from almost any visible fluorophore at resolutions below 30 nm without changing filters or excitation wavelength. The ability of the microscope to image samples at atmospheric pressure, room temperature, and in solution makes it a very promising tool for the biological and materials science communities. The microscope demonstrates the ability to image topographical, optical, and electronic state information for single-molecule identification. A single computer, simple custom control circuits, field programmable gate array (FPGA) data acquisition, and a simplified custom optical system controls the microscope are thoroughly outlined and documented. This versatility enables the end user to custom-design experiments from confocal far-field single molecule imaging to high resolution scanning probe microscopy imaging. Presented are the current capabilities of the microscope, most importantly, high-resolution near-field images of J-aggregates with PIC dye. Single molecules of Rhodamine 6G dye and quantum dots imaged in the far-field are presented to demonstrate the sensitivity of the microscope. A comparison is made with the use of a mode-locked 50 fs pulsed laser source verses a continuous wave laser source on single molecules and J-aggregates in the near-field and far-field. Integration of an intensified CCD camera with a high-resolution monochromator allows for spectral information about the sample. The system will be disseminated as an open system design.

O uso de processos ópticos não lineares é um dos recursos utilizados na microscopia óptica para a obtenção de imagens tridimensionais (3D), sem destruição, de objetos transparentes. A obtenção de imagens em 3D é um recurso muito importante por permitir uma visualização de objetos com estruturas internas complexas. Existem vários processos ópticos não lineares que são usados em microscopia; por exemplo, geração de segundo harmônico, geração de terceiro harmônico, absorção de dois fótons, fluorescência induzida por absorção de dois fótons, etc. cada qual com suas características próprias, vantagens e desvantagens, etc. Um efeito não linear refrativo de grande importância é a rotação não linear da polarização elíptica (RNLPE), que é uma não linearidade tipo Kerr semelhante ao efeito de auto focalização. Através da RNLPE, é possível determinar a magnitude absoluta da não linearidade local, e com esta característica é possível o desenvolvimento de uma microscopia ainda nunca utilizada. O sinal da RNLPE não é regularmente utilizado para microscopia em parte devido à dificuldade de sua medida. No entanto, recentemente foi desenvolvida uma nova maneira, de determinação precisa e simples da RNLPE com o uso de um polarizador girante e um amplificador sensível à fase dupla. Dessa forma, neste trabalho propomos a prova de conceito de um microscópio simples utilizando o sinal de RNLPE. Implementamos um microscópio óptico baseado na medida da RNLPE utilizando um polarizador girante, um amplificador sensível à fase dupla, componentes de baixo custo e um sistema laser de femtossegundo. Obtivemos imagens de capilares de vidros, esferas de vidros, fibras ópticas e células de cebola com sucesso.
The use of nonlinear optical processes is one approach used in the optical microscopy, to obtain three-dimensional (3D) images, without destruction, of transparent objects. The acquisition of 3D images is an important resource to allow better visualization of those objects with internal complex structures. Various nonlinear optical processes are used in microscopy; for example, second-harmonic generation, third-harmonic generation, two-photon absorption, fluorescence induced by two-photon absorption, etc. which one with particular characteristics, advantage and disadvantage, etc. An interesting refractive nonlinearity, the nonlinear elliptical polarization rotation (NEPR) which is a Kerr nonlinearity similar to self focusing. Through NEPR, it is possible to determine the absolute magnitude of nonlinearity location, and this feature is possible to develop even never used microscopy. The NEPR signal is not regularly used for microscopy due to its difficult measurement. However, recently a new accurate and simple method of measurement NEPR was developed with use of rotating polarizer and a dual-phase lock-in amplifier. In this way, in this work we propose a proof of concept of one simple microscopy using the NEPR signal. We assembled a optical microscopy based on NEPR measurement using a rotating polarizer, a dual phase lock-in, low cost components, and a femtosecond laser system. We have successfully obtained image of glass capillaries, optical fibers, glass beds and onion cells.

O diagnóstico preciso das características morfológicas e metabólicas de um tecido e/ou órgão com a finalidade de identificar alterações patológicas, ou avaliar um determinado tratamento, é de grande importância nas áreas de biologia e medicina. Uma excelente alternativa para este diagnóstico, e que permite uma visualização com resolução celular, são imagens de microscopia óptica. Tradicionalmente, analisam-se as características celulares através de processos histológicos; contudo, mais recentemente essa mesma análise tornou-se possível em tecidos sem a necessidade deste preparo histológico. Fenômenos de óptica não-linear, como a fluorescência devido à absorção de dois fótons e a geração de segundo harmônico, são exemplos de processos que podem ser realizados sem preparo histológico com o objetivo de se obter imagens microscópicas em diferentes profundidades com resolução celular. Este projeto teve por objetivo desenvolver um microscópio óptico de varredura a laser baseado em processos ópticos não lineares, para adquirir imagens de tecidos e órgãos, nas condições in vitro, in vivo e ex vivo. O microscópio óptico montado é composto por: um laser de pulsos ultracurtos sintonizável (Ti:Safira), um sistema de varredura espacial (dois espelhos conectados a galvanômetros e conjugados por dois espelhos esféricos, para varredura lateral, e uma plataforma piezoelétrica para varredura axial), uma lente objetiva (20X, abertura numérica de 1,0, imersão em água e distância funcional de 2,0 mm) e um sistema de aquisição e controle. A resolução lateral obtida foi de (0,8±0,1) μm e axial de (4,4±1,5) μm, suficiente para a realização de imagens com resolução subcelular de tecidos biológicos. Imagens de fluorescência e por geração de segundo harmônico foram obtidas com sucesso a partir de tecido ex vivo de pele e fígado de rato, pele de porco e de membrana corioalantóica. Estas imagens revelaram aspectos tidos como relevantes na análise morfo-histopatológica – como estruturas nucleares e de membrana, e a presença de colágeno, e com vantagens como coleta de informação vinda de diferentes camadas do tecido. A montagem desse sistema apresenta potencial para contribuir em estudos em diagnóstico e tratamento de lesões sejam feitos de modo que, no futuro, essa análise resulte em diagnósticos mais precisos e tratamentos mais efetivos.
Accurate diagnosis of the morphological and metabolic conditions of a tissue and/or an organ is essential to define the presence of pathological changes, and to evaluate the response during a number of treatments. The use of optical techniques for biological tissue imaging is an excellent alternative for this purpose. Such techniques allow non-invasive diagnostic procedures, with cellular resolution, and usually provide almost instantaneous response. The use of nonlinear optical techniques such as fluorescence promoted by two-photon absorption is one example of optical technique in which we obtain images of living tissue with spatial resolution at cellular level. The purpose of this study is the assembly and characterization of a custom-made non-linear microscope. This microscope allows customized adjustment for in vitro, in vivo and ex vivo imaging of biological samples. The excitation is done using a tunable femtosecond Ti:Sapphire laser. Two galvanometer mirrors conjugated by two spherical mirrors are used for the lateral scan and for the axial scan a piezoeletric stage is utilized. The light is focused in tissue by an 20X objective lens, in water immersion, numerical aperture of 1.0, and working distance of 2.0 mm. The lateral resolution obtained was (0.8 ± 0.1) μm and (4.4 ± 1.5) μm for axial resolution, which is sufficient for images with sub-cellular resolution to be achieved in biological tissues. Fluorescence and second harmonic generation images were performed using epithelial and hepatic tissue. Those images revealed aspects considered relevant in morpho-histopathology – such as nuclear and citoplasm membrane structures, and the presence of collagen. By means of the microscope it is possible to have images in different depths of tissues with sub-cellular resolution. The assembly of such an equipment shall represent a potential contribution to diagnostics and lesion treatment fields, so that it may result in more precise detection of diseases and more effective treatments in the future.

Orientador: Carlos Lenz César
Tese (doutorado) - Universidade Estadual de Campinas, Instituto de Física Gleb Wataghin
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Resumo: Técnicas de microscopias ópticas são as principais ferramentas capazes de observar células e tecidos biológicos em tempo real e com mínimo dano. Essa área foi revolucionada recentemente através das microscopias confocais de varredura a laser e as microscopias de óptica não linear, naturalmente confocais. Entre os processos não lineares temos, a fluorescência excitada por dois ou mais fótons, geração de segundo harmônico [Second Harmonic Generation - SHG] e terceiro harmônico [Third Harmonic Generation - THG]. SHG e THG são técnicas de óptica não linear coerentes, não necessitam de marcadores exógenos e permitem reconstrução de imagens em três dimensões com resolução espacial subcelular. As técnicas de fluorescência permitem visualizar estruturas específicas no espaço, mas não permitem discriminar as substâncias químicas nas estruturas celulares, e as técnicas de SHG e THG não possuem especificidade química. Espectroscopia Raman possui especificidade química através das propriedades vibracionais das moléculas e pode ser usada como mecanismo de contraste na aquisição de imagens. Comparada com a espectroscopia/microscopia infravermelho, a microscopia Raman traz a informação das vibrações moleculares do infravermelho para o visível, eliminando os problemas da baixa resolução espacial e opacidade das amostras. Entretanto a baixa sensibilidade dessa técnica implica em tempos de aquisição de imagens muito longos, da ordem de horas, inviabilizando acompanhar a dinâmica de processos celulares em tempo real. Como solução para essa baixa sensibilidade do espalhamento Raman espontâneo, surgiu a microscopia por espalhamento Raman Coerente anti-Stokes [Coherent Anti-Stokes Raman Scattering - CARS]. Comparado com Raman espontâneo, a microscopia CARS representa aumento de 4 a 5 ordens de grandeza na sensitividade da técnica, diminuindo os tempos de aquisição ao ponto de viabilizar a aquisição em taxas de vídeos (mais rápido do que 30 quadros por segundo) e estudos em tempo real. Essa tese é dedicada ao estudo experimental e teórico, assim como de algumas aplicações, das técnicas de óptica não linear, com destaque para processos de óptica não linear coerentes. Apresentamos de forma detalhada três sistemas experimentais para a aquisição de imagens de Raman coerente e um sistema integrado com várias técnicas de óptica não linear. Mostramos as primeiras imagens de CARS realizadas no Brasil. Além do CARS convencional, trabalhamos com outra técnica de CARS de ordem mais alta, o CARS cascata [cascade CARS - CCARS], e, no melhor do nosso conhecimento, apresentamos as primeiras imagens internacionais obtidas com essa metodologia. CCARS aumenta o contraste da técnica CARS, diminuindo o fundo não ressonante, um problema que aflige a comunidade científica dedicada ao uso dessa técnica. Além da diminuição do fundo não ressonante, a emissão do CCARS acontece em um comprimento de onda diferente de qualquer outro efeito não linear coerente, significando um acréscimo de complexidade mínimo para sua detecção quando comparado com o CARS. Por último mostramos algumas aplicações realizadas com o sistema experimental desenvolvido para integrar diversas modalidades ópticas em paralelo, especialmente da geração de harmônicos com a fluorescência excitada por dois fótons e suas variantes, como microscopia de tempo de vida de fluorescência (Fluorescence Lifetime Imaging ¿ FLIM)
Abstract: Optical microscopies techniques are the main tools capable of observing cell and biological tissues in real time and with minimum damage. This area have recently been revolutionized by confocal laser scanning microscopies and non-linear microscopies, naturally confocal. Among the non-linear process we have, the two or more photons excited fluorescence, second harmonic generation [SHG] and third harmonic generation [THG]. SHG and THG are coherent nonlinear techniques, they do not require exogenous markers and allow three dimension imaging reconstruction with subcellular resolution. The fluorescence techniques allow visualizing specific structures in space, but do not allow discriminating the chemical substances in cellular structures, SHG and THG techniques do not have chemical specificity. Raman spectroscopy has chemical specificity through the vibrational properties of the molecules and can be used as a contrast mechanism for imaging acquisition. Compared to infrared spectroscopy/microscopy, Raman microscopy brings information about molecular vibration from infrared to visible, eliminating the low resolution and sample opacity problems. However, this technique low sensibility implies in very long imaging acquisition times, order of hours, making it not viable for following cellular process dynamics in real time. As an answer for the spontaneous Raman scattering low sensibility, the coherent anti-Stokes Raman scattering [CARS] emerged. Compared to spontaneous Raman, CARS microscopy presents an increase of 4 to 5 orders of magnitude in the sensitivity of the technique, lowering the acquisition times to the point of making video acquisition (faster than 30 frames per second) and real time studies possible. This thesis is dedicated to the experimental and theoretical study, as well as some applications, of the non-linear techniques, with emphasis on coherent non-linear optical processes. We present in detailed form three experimental systems for the acquisition of coherent Raman images, and a system with the integration of various non-linear techniques. We show the first CARS images acquired in Brazil. In addition to conventional CARS, we worked with other higher order CARS technique, the cascade CARS [CCARS], and, in the best of our knowledge, we present the first international image acquired with this methodology. CCARS increases the contrast from CARS technique, decreasing the non-resonant background, a problem that afflicts the scientific community dedicated to the use of this technique. Besides the decrease of the non-resonant background, the CCARS emission occurs in a different wavelength from any other non-linear coherent effect, meaning a minimum complexity increase for its detection when compared with CARS. Finally we show some applications performed with the experimental system developed to integrate several optical modalities in parallel, especially the generation of harmonics with two photons excitation fluorescence and their variants such as Fluorescence Lifetime Imaging [FLIM]
Doutorado
Física
Doutor em Ciências
830406/2010
CAPES

Un des problèmes à résoudre lors de la réalisation d'un endoscope non linéaire pour des applications biomédicales concerne la propagation d'impulsions ultra courtes dans une fibre optique. Les processus non linéaires concernés nécessitent de grandes puissances d'excitation, réalisables seulement pour des impulsions de très courte durée qui sont déformés et allongés par la dispersion et les non linéarités des fibres. La plupart des techniques d'illumination fibrées pour la microscopie non linéaire emploient des systèmes de pré-compensation pour neutraliser les effets de ces phénomènes. Dans ce travail, nous explorons les possibilités offertes par la formation de solitons de grande énergie dans une fibre à bandes interdites photoniques à coeur solide. Les solitons optiques ont la propriété de conserver leur forme lors de leur propagation, et leur durée reste proche de la valeur minimum définie par la limite physique imposée par leur largeur spectrale, sans avoir besoin de recourir à un système de pré-compensation. De plus, la longueur d'onde et le retard relatif des solitons peuvent être accordés en changeant la puissance lumineuse en entrée de fibre. Plusieurs sources de lumière ont été conçues et réalisées, pour générer de nombreux contrastes non linéaires. Des images d'échantillons biologiques ont d'abord été réalisées en tirant profit de la courte durée des solitons. Puis, des mesures d'absorption transitoire ont été menées dans une configuration pompe-sonde en contrôlant le retard des solitons dans la fibre. Enfin, un montage de CRS basé sur le principe de focalisation spectrale a été réalisé, et son utilité a été démontrée en suivant un équilibre chimique
One of the issues that has to be overcome to realize a nonlinear endoscope for biomedical applications is the propagation of ultra-short pulses in an optical fiber. Nonlinear processes require high peak powers in the focal volume in order to generate observable signals, so the pulses should be as short as possible. This makes them sensitive to the dispersion and nonlinearities of the fibers. Most of the existing techniques of ultra-short pulses fiber-delivery rely on complex pre-compensation systems to counteract these effects. In this work, we explore the possibilities offered by the generation of high-energy solitons in a custom-built solid-core photonic bandgap fiber, for nonlinear microscopy and spectroscopy. Optical solitons preserve their shape when they propagate in a fiber, and their duration remains close to the minimum value physically allowed by their bandwidth, without the need of any pre-compensation. Moreover, the wavelength and delay of the soliton can be tuned by changing the power at the input of the fiber. Several soliton-based light sources were designed and realized, generating contrast in the most prevalent nonlinear microscopy modalities. TPEF and SHG images of biological samples were first realized by taking advantage of the short duration of the solitons. By controlling the delay of the soliton, transient absorption measurements were then realized in a pump-probe configuration. Finally, the wavelength tunability of the soliton was used to generate the Stokes beam in a CRS setup based on the spectral focusing technique. The capabilities of this scheme were demonstrated by performing CRS microspectroscopy to monitor a chemical equilibrium

Nous avons étudié l'influence de la fabrication de guides d'ondes optiques par échange protonique doux(SPE) sur les cristaux de niobate de lithium (LN) polarisé périodiquement et nous avons montré que,dans certains cas, ce processus conduit à la création de nanodomaines en surface. Ces nanodomaines enforme d'aiguille peuvent être responsables de la réduction de l'efficacité de conversion non linéaireobservée dans les guides qui sont affectés. Nous avons également étudié l'influence de différents typesd'échange protonique sur la formation, par application d'un champ électrique, de domaines dans le LNcongruent. Cette étude montre que le seuil de nucléation peut être fortement réduit par la présence duguide d'onde et que l'apparition et le développement des domaines en forme de traits est fortementmodifiée. Elle montre également que la fusion des nanodomaines existants au voisinage des parois dedomaine aboutit à la formation de parois élargies et de domaines en forme de dendrites. En irradiantavec un faisceau d'électrons la surface Z- d'un échantillon de LN préalablement soumis à un échangeprotonique doux et recouvert d'une couche de résine électronique, nous avons réussi à former desdomaines avec des formes arbitraires. Par cette technique, nous avons fabriqué des domainespériodiques d'excellente qualité dans des cristaux présentant des guides canaux SPE. Des expériences degénération de deuxième harmonique dans ces guides nous ont permis d'obtenir des efficacités deconversion de 48%/W.cm2 ce qui est conforme aux prédictions ainsi que la forme des spectres d'accordde phase que nous avons observés. Ceci démontre tout l'intérêt de ce processus
The investigation of influence of the soft proton exchange (SPE) optical waveguide (WG) creation onperiodically poled lithium niobate (PPLN) has been done. It has been shown that the WG fabricationprocess can induce the formation of needle like nanodomains, which can be responsible for thedegradation of the nonlinear response of the WG created in PPLN crystals. The domain structure (DS)evolution has been studied in congruent lithium niobate (LN) crystals with surface layers modified bythree different proton exchange techniques. The significant decrease of the nucleation threshold fieldand qualitative change of domain rays nucleation and growth have been revealed. The formation of abroad domain boundary and dendrite domain structure as a result of nanodomains merging in front ofthe moving rays has been demonstrated. The formation of DS in LN with SPE by irradiation of coveredby electron resist polar surface of LN has been investigated. Formation of domains with arbitrary shapesas a result of discrete switching has been revealed. Finally, it has been demonstrated that electron beamirradiation of lithium niobate crystals with surface resist layer can produce high quality periodical domainpatterns after channel waveguide fabrication. Nonlinear characterizations show that the conversionefficiencies and the phase matching spectra conform to theoretical predictions, indicating that thiscombination presents a great interest for device fabrication. Second harmonic generation withnormalized nonlinear conversion efficiency up to 48%/(W cm2) has been achieved in such waveguides

Nous avons développé une nouvelle méthode de microscopie par effet électro-optique linéaire (effet Pockels), dite PLEOM, permettant de cartographier la susceptibilité du deuxième ordre Chi(2) d'un matériau non-centrosymétrique [1, 2]. Cette méthode est complémentaire de la microscopie de génération de seconde harmonique, et s’en distingue par différents aspects physiques et pratiques. Grâce à une détection interférométrique stabilisée, le retard de phase provoqué par une variation d'indice locale du matériau non-linéaire sous l'effet d'un champ électrique est détecté à 10-6 radians près, ouvrant la voie à l'imagerie d'échantillons biologiques ou au suivi du mouvement de nano-sondes [3]. PLEOM apporte un type de données nouveau, la "réponse en phase" du matériau, porteuse d'information physiques plus difficilement accessibles en microscopie biphotonique.Ce manuscrit décrit de nouveaux domaines de développement et d’application de PLEOM, qui a évolué vers une plateforme aux applications variées et multi-échelles, allant du nanométrique au millimétrique.Nous avons tout d’abord montré comment déterminer le vecteur de polarisation attaché à des nano-cristaux ferroélectriques uniques, en vue de leur utilisation comme nano-sondes. Cette nouvelle méthode permet, à notre connaissance de façon unique, de distinguer deux nano-cristaux mono-domaines d'orientations exactement opposées, dont les réponses en SHG ne peuvent pas être distinguées. Une image de phase électro-optique, combinée à un diagramme de polarisation, donne accès à l'orientation vectorielle d'un nano-cristal orienté aléatoirement dans le référentiel du laboratoire. Un verrou est ainsi levé pour des applications comme l'imagerie de nano-domaines ferroélectriques, celle de potentiels électrochimiques membranaires, où l'étude de la dynamique de rotation de molécules. Deux spécificités remarquables de PLEOM en font une méthode d'avenir : la faible intensité de pompage qui assure une bien meilleure biocompatibilité ainsi que la simplicité de la source laser continue utilisée.Nous avons ainsi pu utiliser PLEOM pour caractériser les domaines ferroélectriques d'un cristal de KTiOPO4 périodiquement réorienté en vue d’un quasi-accord de phase, ainsi que ceux d'un cristal bidimensionnel quasi-périodique de LiNbO3. Un retournement clair de la phase de 180 degree est observé au travers des parois de domaines, dont les coefficients électro-optiques apparaissent opposés dans le référentiel du laboratoire. PLEOM se présente ainsi comme un outil de caractérisation non destructif des propriétés de ces cristaux artificiels dont les motifs et les défauts (tels qu'une orientation localement incomplète) ont été caractérisés spatialement, et permet de mesurer localement leurs propriétés non-linéaires, dont le caractère tensoriel permet d’aller au-delà des informations acquises en microscopie classique.En outre, nous avons fait la preuve de principe d'une nouvelle expérience biomimétique, visant à étudier les potentiels membranaires cellulaires, en utilisant PLEOM sur des membranes phospholipidiques créées sur puce micro-fluidique et dopées en colorants
Complementing Second-Harmonic Generation (SHG) microscopy, a new home-made nonlinear microscope named Pockels Linear Electro-Optical Microscopy (PLEOM) based on the linear electrooptic (Pockels) effect, has been developed and used to map the second-order susceptibility Chi(2) of non-centrosymmetric materials with high sensitivity due to a stabilized interferometric homodyne detection scheme [1, 2]. This enables PLEOM to detect the electrooptic phase retardation of light resulting from the variation of the refractive index of nonlinear materials down to 10-6 radian and to investigate nonlinear materials at the nano-scale [3] towards applications in imaging of biological samples and tracking of labels therein. With PLEOM, a new imaging method allows to access, besides the aplitude, the no less crucial phase response, which is not readily amenable to classical SHG microscopy. In the frame of this dissertation, we have further extended the range of applications of PLEOM to investigate nonlinear materials and structures from nano- to millimeter-scale.Firstly, we have proposed and demonstrated a new approach towards the full vector determination of the spontaneous polarization of single ferroelectric nano-crystals used as SHG nano-probes. This method allows to remove the ambiguity inherent to earlier polarization-resolved SHG microscopy experiments, and has permitted full determination of the orientation of single domain ferroelectric nano-crystals. The electrooptic phase response obtained in the form of phase images and polarization diagrams yields the full orientation in the laboratory frame of randomly dispersed single nano-crystals, together with their electric polarization dipole. The complete vector determination of the dipole orientation is a prerequisite to important applications including ferroelectric nano-domain orientation, membrane potential imaging and rotation dynamics of single biomolecules, especially by using a new low-cost non-invasive imaging method with a low intensity illumination beam.The ferroelectric domain pattern of periodically poled KTiOPO4 and of a two-dimensional decagonal quasi-periodic LiNbO3 nonlinear crystal was determined by local measurement of their electro-optically induced phase retardation. Owing to the sign reversal of the electrooptic coefficients upon domain inversion, a 180 degree (pi) phase shift is observed across domain barriers between domains with opposed orientations. PLEOM allows to reveal the nonlinear and electrooptic spatially modulated patterns in ferroelectric crystals in a non-destructive manner and to determine their poling period, duty cycle and short-range order as well as to detect local defects in the domain structure, such due to incomplete poling.In addition, we have also proposed and demonstrated a new method, based on the voltage dependence of the electrooptic dephasing, to mimic the membrane potential in cells, working at this stage on nonlinear dye containing phospholipidic membranes, grown in a microfluidic set-up

Les signaux non linéaires provenant de nanostructures métalliques et cristallines sont connus pour être fortement dépendants vis à vis de la polarisation. Ceci est dû à leur propriété de symétrie locale, reliée à leur réponse volumique ou surfacique. Les signaux de polarisation venant de nanostructures de taille inférieure à la limite de diffraction sont généralement mesurés avec un spot limité par la diffraction (300 nm) ce qui représente la moyenne du signal. Cette technique a pour défaut de perdre l'information spatiale du signal de polarisation. Nous avons développé une nouvelle méthode de microscopie à polarisation non-linéaire qui exploite l'information en dessous de la limite de diffraction.Une analyse de Fourier d'un signal non linéaire a été faite en dessous de la limite de diffraction sur une image sur-échantillonnée et corrigée (taille du pixel=50 nm). Le gain en résolution est du à la sensibilité spatiale de la polarisation. Pour ce faire, nous avons mesuré un signal polarisé de seconde harmonique de nanostructures plasmoniques de différentes formes (150 nm). Nous avons montré que la nature vectorielle du champs local confiné peut être retrouvé avec une résolution de 40 nm en utilisant la nanoscopie polarisée non linéaire. Nous avons par ailleurs montré que nous pouvons imager l'hétérogénéité spatiale de nanoparticules ferroélétriques cristallines (BaTiO3) de taille allant de 100 nm à 500 nm. Ceci prouve l'existence d'une coque centrosymétrique dans des petites structures. Enfin, les nanocristaux de KTP nanostructures sont les candidats idéaux pour la générations de signaux non linéaires bien maîtrisée
In this work, we develop a novel polarized nonlinear microscopy method that exploits sub-diffraction resolution information. Fourier analysis of the polarization modulated nonlinear signal is performed on over-sampled, drift-corrected images (50nm pixel size). The information gained by polarization-induced modulation signals provides a higher level of spatial selectivity that is directly related to the local optical response of the investigated system, at a scale below the diffraction limit. The gain in spatial scale is due to the additional spatial sensitivity brought by polarization. This approach is applied to polarized second harmonic generation imaging in plasmonic nanostructures (150nm size) of multi-branched shapes, in which the vectorial nature of the local field confinement can be retrieved with a resolution of 40 nm. We also demonstrate the possibility to image spatial heterogeneities within crystalline ferroelectric BaTiO3 nanoparticles of 70nm to 500nm size, emphasizing in particular the existence of a centrosymmetric shell in small size structures. These nanostructures will be used as starting models for coherent optical probes in biological media (cells, tissue slices or in vivo) with two objectives. First, the nonlinear nature of their emission will make them stable and tunable nanosources, able to report their localization with high accuracy in 3D, potentially sensing local environment changes, and actively inducing perturbations such as controlled temperature increase at the nanoscale. Second, the coherent nature of their emission will make them useful as local nanoprobes for wavefront and polarization correction through scattering media

La symétrie spatiale d’un milieu matériel influe fortement sur le mécanisme de son interaction avec un champ électromagnétique extérieur. C’est ce qu’on observe de manière évidente en optique non linéaire. Il est bien établi théoriquement que pour les cristaux dont le groupe d’espace est muni d’une symétrie d’inversion - cristaux dits centrosymétriques -la génération d’harmonique paire est impossible
The spatial symmetry of a material environment strongly influences the mechanism of its interaction with an external electromagnetic field. This is evident in non-linear optics. It is well established the oretically that for crystals the space group is provided with an inversion symmetry - so-called centrosymmetrical crystals -Paired harmonic generation is impossible

Les techniques de microscopie non linéaire connaissent un essor considérable ensciences du vivant, du fait de leur capacité à imager les tissus biologiques en profondeur et àexploiter différents contrastes dont les plus connus sont la fluorescence excitée à deux photons(2PEF) et la génération de second harmonique (SHG).Ce travail de thèse 'articule autour de la métrologie de milieux diffusants et d'applicationsbiomédicales de la microscopie non linéaire. Après une présentation générale de la technique, nousdécrivons une méthode originale de mesure du coefficient de diffusion μs et du facteur d'anisotropieg de milieux turbides épais basée sur la comparaison des intensités de fluorescence épi-collectéesselon trois modalités de notre microscope non-linéaire. Notre méthode est alors appliquée à lacaractérisation de gels biomimétiques et d'échantillons d'intérêt biologique. Le manuscrit abordeensuite le problème de l'imagerie en profondeur d'explants de peau humaine ré-innervée par desneurones sensoriels de rats nouveau-nés. Le choix du marqueur neuronal fluorescent fait l'objetd'une mesure in situ de la section efficace d'absorption à deux photons de différents fluorophores.La faisabilité d'une imagerie bimodale exploitant la fluorescence de ce marqueur et la réponse SHGdu collagène fibrillaire du derme est démontrée. Le manuscrit s'achève par une étude faisant suiteà des travaux de thèse antérieurs relatifs à la quantification de la fibrose hépatique par microscopieSHG/2PEF couplée. Nous appliquons la méthode de scoring SHG développée précédemment àune cohorte de patients infectés par le virus de l'hépatite C et comparons nos résultats aux testsMETAVIR et Ishak.

Estudos em interfaces são importantes para o completo entendimento de muitos processos em química, física e biologia. Esses sistemas são governados principalmente pelas propriedades interfaciais dos materiais. Nas duas últimas décadas, o desenvolvimento de novos métodos experimentais melhorou o nosso entendimento das propriedades interfaciais. O advento de uma série de técnicas de espectroscopia a laser baseadas em óptica não linear e o desenvolvimento das técnicas de microscopia por ponta de prova, possibilitaram estudos antes inimagináveis em superfícies e interfaces. Entre as técnicas de espectroscopia não linear, destacamos a espectroscopia por Geração de Soma de Frequências (espectroscopia SFG). Essa técnica foi desenvolvida por Shen et al. em 1987 e, desde então, é aplicada a muitos estudos em superfícies e interfaces. A espectroscopia SFG pode fornecer informações sobre a natureza química por meio do espectro vibracional e sobre o ordenamento médio das moléculas em uma única monocamada. O sinal SFG só pode ser gerado em meios não centrossimétricos, isso inclui superfícies ou interfaces entre meios centrossimétricos, onde há quebra da simetria de inversão. A combinação da espectroscopia SFG com a microscopia óptica tem sido proposta como uma nova técnica experimental para obter imagens em interfaces com sensibilidade química pelo espectro vibracional e contraste pela orientação e ordenamento das moléculas. Neste trabalho, apresentamos o desenvolvimento, construção e caracterização de um Microscópio SFG (MSFG). Esse MSFG foi especialmente projetado para estudos em superfícies ou interfaces tanto líquidas quanto sólidas. Testes iniciais de desempenho do MSFG foram realizados na interface líquido/ar da solução binária água/acetonitrila (H2O⁄CH3CN). Foram obtidas imagens do sinal SFG ressonante com o estiramento simétrico do grupo metil (CH3) da acetonitrila na interface líquido⁄ar da solução binária. Variando a fração molar da acetonitrila na solução entre 4% e 20% observamos a dependência da intensidade do sinal SFG na interface em função da fração molar de acetonitrila no volume do líquido. Testes também foram feitos em filmes Langmuir-Blodgett multicamada de ácido esteárico (CH3(CH2)16COOH). Obtivemos a espectromicroscopia SFG na ressonância dos grupos CH2 e CH3 do ácido graxo. Pelas diferenças entre os espectros SFG das regiões ordenadas e desordenadas, a espectromicroscopia revelou distribuições microscópicas do ordenamento das cadeias alquila que formam o filme. A sensibilidade da detecção do sinal SFG foi caracterizada e revelou a possibilidade de obter imagens na superfície da água em menos de um minuto. A caracterização óptica e os testes nas interfaces líquido⁄ar e sólido⁄ar demonstraram a completa capacidade do MSFG como ferramenta para investigar qualquer superfície ou interface, seja essa líquida ou sólida.
Interface studies are important for the complete understanding of many processes in chemistry, physics and biology. These systems are mainly governed by the interfacial properties of the materials. In the last two decades, the development of new experimental methods improved our understanding of interfacial properties. The advent of a host of laser spectroscopy techniques based on nonlinear optics and the development of the scanning probe microscopy techniques, opened up unimaginable possibilities of studies at surfaces and interfaces. Among these nonlinear spectroscopies we turned our attention to Sum Frequency Generation spectroscopy (SFG spectroscopy). This technique was developed by Shen et al. in 1987 and, since then, it has been applied to many studies of surfaces and interfaces. SFG spectroscopy can provide information about the chemical nature by the vibrational spectra and about the average of molecular ordering in a single monolayer. The SFG signal only can be generated in a noncentrossymetric media, this includes surfaces or interfaces between centrossymetric media, where there is a broken in the inversion symmetry. The combination of SFG spectroscopy with optical microscopy has been proposed as a novel experimental technique to obtain images at interfaces with chemical sensitivity by the vibrational spectra as well as contrast by the ordering and orientation of the molecules. In this work we present the development, construction and characterization of an SFG Microscope (SFGM). This SFGM was specially designed to perform studies on surfaces or interfaces of liquids and solids. Initial SFGM performance tests were performed at the liquid/air interface of the water/acetonitrile (H2O/CH3CN) binary solution. The images of the SFG signal were acquired on the resonance of the methyl group (CH3) of acetonitrile present at the liquid⁄air interface of the binary solution. By varying the molar fraction of acetonitrile in the solution between 4% and 20% we observed the dependency of the SFG signal intensity as a function the acetonitrile bulk mole fraction. We also performed tests in multi-layered Langmuir-Blodgett films of stearic acid (CH3(CH2)16COOH). We obtained the SFG spectromicroscopy in the resonance of CH2 and CH3 groups of the fatty acid. By the differences between the SFG spectra of ordered and disordered regions, the spectromicroscopy revealed microscopic distribution of the conformational ordering in the alkyl chains that composes the film. The sensitivity of the SFG microscope was characterized and it was shown that images could be acquired at the water surface in less than one minute. The optical characterization and the performed tests at the liquid/air and solid/air interfaces demonstrated the full capabilities of the SFGM as a tool for investigations in any liquid or solid interface.

Third-harmonic generation (THG) is a fundamental nonlinear optical process that has been used in different applications such as third-order nonlinear materials characterization and nonlinear microscopy. It is widely employed since the third-order nonlinearity is the most important in isotropic materials and THG occurs in all media regardless of symmetry. In the tightly focused laser beam condition THG is observed only at the materials interfaces, where the focal symmetry is broken due to the presence of two media with different refractive index and/or third-order susceptibilities. Measuring slabs of different types of optical glasses, using femtosecond laser pulses, we could explain the asymmetric THG intensity profile observed at the interfaces. The harmonic generated at the exit interface is systematically stronger than the one generated at the entrance and this phenomenon can be understood by taking into account the presence of self-focusing effects. Basically, the self-focusing reduces the beam waist radius at the exit interface, resulting in greater laser irradiance and, consequently, higher THG. This study was then extended to the interfaces of a cuvette filled with organic solvents. Such systems present four interfaces and a mixture of nonlinear processes contributions since the cuvette walls present only electronic nonlinearity and the solvents present both electronic and orientational ones. In this way, the solvents may present an additional self-focusing contribution and, due to the noninstantaneous nature of the orientational process, the self-focusing from the solvent may be influenced by the pulse duration. In this case, the THG, which is an instantaneous electronic phenomenon, can be indirectly affected by pulse duration by means of the self-focusing effect. Usually, the slow orientational contribution is not considered for materials characterization by THG which may lead to incorrect nonlinear coefficient values, that means our study is important from the fundamental physics point of view and also for applications such as materials characterization. Based on the application of THG in nonlinear microscopy, we also present a microscopy technique which makes use of spatial frequency-modulated imaging (SPIFI) with single element detection. The microscope was developed at Colorado School of Mines (CSM) during an internship. The system uses a spatial light modulator (SLM) to provide the spatial frequency modulation and permits enhanced resolution images. THG SPIFI images are shown for the first time and we also report images obtained by other nonlinear optical process. In summary, the studies presented in this PhD work are of great importance for THG fundamental understanding, materials characterization and nonlinear optical microscopy.
Geração de terceiro harmônico (GTH) é um processo óptico não linear fundamental que tem sido usado em diferentes aplicações, como em caracterização óptica não linear de materiais e microscopia não linear. Ele é amplamente empregado uma vez que a não linearidade de terceira ordem é a mais importante em materiais isotrópicos e GTH ocorre em todos os meios independente da simetria. Na condição de feixe fortemente focalizado a GTH é observada apenas nas interfaces do material, onde a simetria focal é quebrada devido à presença de dois meios com diferentes índices de refração e/ou susceptibilidades de terceira ordem. Medindo lâminas de diferentes tipos de vidros ópticos, com pulsos de laser de femtossegundos, nós explicamos o perfil assimétrico de intensidade de GTH observado nas interfaces. O harmônico gerado na interface de saída é sistematicamente mais intenso do que o gerado na entrada e este fenômeno pode ser entendido levando-se em conta a presença do efeito de autofocalização. Basicamente, a autofocalização reduz a cintura do feixe na interface de saída do material, resultando em uma maior irradiância e, consequentemente, maior GTH. Este estudo foi estendido para o caso de interfaces de uma cubeta preenchida com diferentes solventes orgânicos. Tais sistemas apresentam quatro interfaces e uma mistura na contribuição dos processos não lineares, dado que as paredes da cubeta apresentam apenas não linearidade eletrônica e os solventes podem apresentar não linearidades tanto eletrônicas quanto orientacionais. Neste sentido, os solventes podem apresentar uma contribuição adicional de autofocalização e, devido à natureza não instantânea do processo orientacional, a autofocalização proveniente do solvente pode ser influenciada pela duração do pulso. Neste caso, a GTH, que é um fenômeno eletrônico (instantâneo), pode ser indiretamente afetada pela duração do pulso por meio do efeito de autofocalização. Usualmente, a contribuição orientacional não é considerada na caracterização de materiais por GTH, o que pode levar à valores incorretos para os coeficientes não lineares, o que significa que nosso estudo é importante do ponto de vista de física fundamental como também em aplicações como caracterização de materiais. Por conta da aplicação da GTH em microscopia não linear, apresentamos também nesta tese uma técnica de microscopia, que baseia-se em uma modulação em frequência espacial para imageamento (SPIFI) com uso de um detector de elemento único. O microscópio foi desenvolvido na Colorado School of Mines (CSM) durante um período de estágio. O sistema utiliza um modulador espacial de luz (SLM) para produzir a modulação em frequência espacial e permite obtenção de imagens em alta resolução. Imagens por GTH SPIFI são mostradas pela primeira vez e também apresentamos imagens obtidas por outros processos ópticos não lineares. Em resumo, os estudos apresentados neste trabalho de doutorado são de grande importância para o entendimento fundamental do processo de GTH, caracterização de materiais e microscopia óptica não linear.

L’objectif de cette thèse est l’élaboration de sondes organiques pour la microscopie optique non-linéaire par fluorescence excitée à deux photons (F2P) et génération de seconde harmonique (GSH). Dans une première partie, cette thèse décrit la synthèse de sondes pour l’imagerie de potentiels de membrane par GSH, comportant un ou plusieurs motifs sucres ainsi que leurs caractérisations spectroscopiques. Les premiers essais en imagerie biologique ont permis de démontrer une bonne affinité des sondes sucres pour la membrane cellulaire et un signal de GSH sur cellule neuronale a pu être observé sur une période de temps allant jusqu'à près de trois heures. La seconde approche a consisté à synthétiser et étudier des chromophores possédant des propriétés de fluorescence à l’état solide pour des applications dans la synthèse de nanoparticules fluorescentes pour l’imagerie biologique. 18 des 21 composés synthétisés ont pu être cristallisés et leur structure résolue par diffraction des rayons X et les propriétés spectroscopique en solution et à l’état solide ont été réalisées. Cette étude a permis de montrer que l’arrangement des molécules les unes par rapport aux autres avait une grande influence sur la fluorescence à l’état solide et donc que les substituants avaient une grande importance. Enfin, cette partie se termine sur les premiers essais effectués pour synthétiser des nanoparticules fluorescentes
The objective of this thesis is the design of new organic probes for nonlinear optical microscopy by two-photon excited fluorescence (TPEF) and second harmonic generation (SHG). In the first part, we describe the synthesis of probes for voltage sensitive imaging by SHG, bearing one or more sugar units and their spectroscopic characterization. The first biological imaging tests have shown good affinity of the probes to the cell membrane and the SHG signal of neuronal cell was observed over a period of nearly three hours. The second part comprises the synthesis and the study of chromophores with solid state fluorescence properties for use in fluorescent nanoparticles for biological imaging. 18 of the 21 compounds synthesized have been crystallized, their crystal structures determined by X-ray diffraction and their spectroscopic properties studied in solution and in the solid state. These studies showed that the arrangement of molecules relative to each had a great influence on the solid state fluorescence and therefore that the substitution was very important. The chapter ends with the first tests of fluorescent nanoparticles synthesis

Orientador: Carlos Lenz Cesar
Dissertação (mestrado) - Universidade Estadual de Campinas, Instituto de Física Gleb Wataghin
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Resumo: Biologia celular é um novo mundo promissor com enorme impacto social, econômico e na saúde. Organismos vivos são capazes de, produzir a própria energia a partir da luz do sol, se reproduzir, de se auto-reparar, sinalizar e navegar por sinais bioquímicos, biomecânicos, luminosos, térmicos, e outros, e produzir materiais à temperatura ambiente. As possibilidades abertas por essa área incluem, desde bactérias e protozoários usados para destruir células de câncer, regeneração de órgãos inteiros, produção de etanol a partir de algas, e outros. Entretanto, para o entendimento da biologia em seu nível mais profundo, ferramentas de observação não destrutivas fazem-se necessária para seguir os processos celulares durante seu tempo de vida. A óptica tem a única onda não destrutiva capaz de fornecer informações em tempo real com suficiente resolução espacial de eventos acontecendo internamente à célula. Ademais, porque feixes de luz não colidem, a óptica permite a integração de diferentes técnicas capazes de reunir informações simultâneas de processos celulares. Óptica não linear é especialmente adequada para tal, pois não requer marcação ou processamentos especiais de amostras que poderiam destruir, ou modificar, os processos celulares. Além disso, técnicas elásticas, como a geração de segundo e terceiro harmônicos não liberam energia no material que é, portanto, preservado após a observação. O objetivo dessa tese é desenvolver uma plataforma multimodal para observação de processos biológicos pelo uso de microscopias de fluorescência excitada por absorção de dois fótons, geração de segundo harmônico e geração de terceiro harmônico no mesmo instrumento. Nosso grupo foi pioneiro em demonstrar a aquisição de imagens de geração de segundo harmônico no Brasil e, essa tese é a primeira a realizar a aquisição de imagens por geração de terceiro harmônico. Estas três técnicas juntas fornecem informações complementares a respeito da organização de células e tecidos. Enquanto a fluorescência pode ser específica para algumas proteínas alvo, o segundo harmônico pode observar a rede de colágeno da matriz extra celular e, o terceiro harmônico pode observar os núcleos e gotículas de lipídios internas às células. Esta tese descreve o sistema experimental para realizar essas aquisições multimodais de imagens, a física por trás dos sinais não lineares, importantes para entender seu significado biológico, e mostra aplicações das técnicas para diferentes amostras biológicas e inorgânicas
Abstract: Cell biology is promising a brave new world with enormous social economic and health impacts. Living organisms are capable of producing their own energy from sun light, reproduce, self-repair, signalize and travel in response to biochemical, biomechanical, light and thermal signals among others, and to produce materials at room temperature. The possibilities opened by this area range from bacteria and protozoa used to destroy cancer cells, whole organs regeneration, ethanol produced from algae, and others. However, to actually understand biology at its deepest level no destructive observation tools are necessary to follow cell processes during their time course. Optics is about the only wave capable to provide non destructive real time information with enough spatial resolution of the events happening inside the cells. Moreover, because light beams do not collide, optics allows the integration of different techniques capable to gather simultaneous information during a cell process. Non linear optics is specially suited for that in the sense that it does not require staining or special sample processing that would destroy, or change, the process. Besides, elastic techniques such as second and third harmonic generation do not release energy at the material which is therefore preserved after the observation. The objective of this thesis is to develop a multimodality platform for biology process observation by using Two Photon Excited Fluorescence, Second Harmonic Generation and Third Harmonic Generation Microscopy with the same instrument. Our group was the first one to demonstrate the acquisition of Second Harmonic Generation images in Brazil and this thesis is the first one to perform the acquisition of third harmonic generation images. These three techniques together provide complementary information respect to cell and tissue organization. While fluorescence can be specific target to some proteins, second harmonic can observe the collagen network of extra cellular matrix and the third harmonic can observe the nucleus and lipid droplets inside the cells. This thesis describe the experimental setup to perform these multimodal image acquisition, the physics behind the non linear signals, important to understand their biological mean, and shows applications of these techniques for different biological and inorganic samples
Mestrado
Física
Mestre em Física

Les besoins de nouvelles technologies en télécommunications motivent la recherche de matériaux participant à la formation de composants optiques. Dans ce but, l'étude de la photostructuration de nouvelles formulations de verres possédant des propriétés optiques ajustables a été réalisée. Deux cas ont été étudiés : la modification du réseau vitreux ou l'introduction d'ions photosensibles au sein du verre. - Des verres oxysulfures de germanium et de gallium ont été élaborés sous forme de massif, et sous forme de couche mince. Leurs propriétés optiques sont intermédiaires à celles des composés purs Ge(Ga)O2 et Ge(Ga)S2. La photosensibilité des verres diminue avec l'augmentation de la valeur du rapport O/S des matériaux. - L'ajout d'ions argent au sein de verres phosphates de zinc a été étudié. Plusieurs techniques de réduction de l'ion argent dans ces verres ont été explorées comme l'irradiation par faisceau électronique, par rayonnement gamma ou par Laser. Dans le cas particulier d'une irradiation par laser femtoseconde de cadence de 8 Mhz et émettant à 1030 nm, il a été possible de créer des structures optiques de 85 nm environ, donc bien inférieur à la longueur d'onde utilisée pour l'écriture. Ces premiers résultats offrent une nouvelle alternative à la création dans le futur de structures photoniques composites.

Les taches blanches sont liées à l'hypominéralisation sous la surface de l'émail et sont la 1ère étape du développement de la carie dentaire. La détection précoce des caries dentaires naissantes avant qu'elles n'atteignent le stade de la cavitation offre une opportunité pour des soins dentaires efficaces. Pour réaliser les objectifs de cette étude qui sont de renforcer l'idiome des soins minimalement invasifs, nous avons identifié un modèle de cycle de pH modifié qui permet d’imiter les conditions intra-buccales qui conduisent à la formation de lésions de type tache blanche, dans un court laps de temps. Des techniques optiques non invasives, comme la microscopie Raman confocale et la microscopie multiphotonique, ont été utilisées dans cette étude pour détecter de petits changements dans la composition chimique de l'émail in vitro.De plus, la technique de nano-indentation a été appliquée pour étudier les changements dans les propriétés mécaniques de l'émail et les relier à ceux affectant sa composition chimique après l'induction des caries, afin d‘ajouter de la spécificité chimique-mécanique aux informations sur les lésions sous-surface de l'émail. Les résultats obtenus démontrent un grand potentiel pour les techniques examinées, fournissant une base pour des applications intéressantes dans le diagnostic clinique de différentes pathologies dentaires. Pour résoudre le problème du traitement des lésions primitives sans intervention chirurgicale, l'efficacité de la crème GC Tooth Mousse et du dentifrice contenant de la nano-hydroxyapatite «KAREX» dans l'amélioration de la reminéralisation de l'émail déminéralisé par la localisation du phosphate de calcium amorphe à la surface de la dent a été inspectée. L'étude a indiqué le manque de preuves fiables soutenant l'efficacité des agents reminéralisants dans le traitement des taches blanches. Ce travail doit être poursuivi par d'autres études in-vitro et par des études cliniques
White spot lesion is the subsurface hypomineralization of enamel indicating the 1st stage of dental caries development. Early detection of incipient dental caries before it reaches the stage of cavitation offers an opportunity for effective dental care. The objectives of this study were to strengthen the idiom of minimally invasive treatment. In order to achieve the specified goals; we have identified a modified pH cycling model that can mimic the intraoral conditions leading to white spot lesions formation in a short time. In addition, non-invasive optical techniques, such as confocal Raman microscopy and multiphoton microscopy were used in this study to detect small changes in the enamel chemical composition in vitro.Furthermore, nano-indentation technique was used to detect the changes in the mechanical properties of enamel and relate them to those affecting its chemical composition after caries induction in order to add chemico-mechanical specificity in providing important information about subsurface lesions in enamel. The obtained results demonstrate a great potential for the examined techniques, providing a basis for interesting applications in the clinical diagnosis of various pathological conditions in dentistry. To treatment the incipient carious lesions non-invasively, the effectiveness of GC Tooth Mousse cream and nHA containing-dentifrice "KAREX" in the remineralization of demineralized enamel through localizing amorphous calcium phosphate at tooth surface has been inspected. The study indicated a lack of reliable evidence supporting the efficacy of remineralizing agents in the treatment of white spot lesions. Within the limitations of this study, further laboratory studies together with clinical research are therefore required to increase the available knowledge on this prevalent subject

Les propriétés optique des nanoparticules ont ouvert de nouvelles voies dans de nombreux domaines, de l'optique fondamental avec la compréhension des interactions dans la matière, la biologie et la compréhension du fonctionnement des milieux cellulaires, en passant par la microscopie en champ proche, qui permet de sonder localement les propriétés physiques de divers nano-systèmes. Au cours de ce travail, nous avons réalisé l'étude de la génération de seconde harmonique (GSH) de nanoparticules de KTP ainsi que de dimères d'or isolés. Des mesures optiques du rayonnement émis par ces nano-objets montrent qu'ils sont parfaitement photostables. Par ailleurs, nous avons aussi étudié de nouvelles particules actives qui permettent d'obtenir un double signal, de luminescence ainsi que de GSH. Ces nanosources bimodales sont constituées des nanoparticules de KTP dopées avec des ions Europium. Dans une seconde partie, nous tentons de fabriquer des sondes optiques pour le champ proche en utilisant les nanocristaux non-linéaires de KTP, ceci dans le but de développer une nouvelle microscopie optique en champ proche capable de sonder localement et vectoriellement un champ électromagnétique. Une pointe de microscopie à force atomique est fonctionnalisée par une particule d'or, puis approchée d'un nanocristal de KTP. Des résultats préliminaires montrent qu'il est possible par cette méthode de sonder le champ électromagnétique présent autour d'une nanoparticule d'or.

Les protéines membranaires sont particulièrement riches en acides aminés aromatiques, tels que le tryptophane (W). On retrouve cette originalité dans beaucoup de peptides antimicrobiens et dans les protéines de fusion virales. La glycoprotéine de l'enveloppe de HIV-1, gp41, en est un exemple. Manifestement, les résidus W sont impliqués dans la perturbation des membranes et la formation des pores. L'objectif de ce travail est d'étudier le rôle des résidus W dans de telles activités en utilisant l'optique non linéaire. Pour cela, nous avons préalablement déterminé l'hyperpolarisabilité (le potentiel non linéaire) du W par la diffusion Hyper Raleigh (HRS). Puis nous avons montré une évolution de la réponse non linéaire de petits peptides synthétiques en fonction du nombre croissant de leurs résidus W. Ces résultats ont permis de suivre l'implication des tryptophanes de deux peptides K3W et gp41W, lors de leurs interactions avec des monocouches lipidiques à l'interface air-eau par la génération de second harmonique (SHG). D'autre part, l'influence de telles interactions sur la structure secondaire et l'orientation des peptides a été déterminée par le PM-IRRAS. Nous avons ainsi montré la cohérence entre les modifications du signal SHG, liées à des changements d'orientation des tryptophanes et celles des spectres de PM-IRRAS, dues à des changements d'orientation de la structure secondaire de gp41W
Membrane proteins are extremely rich in aromatic amino acids, like tryptophan (W). This particularity is found in many antimicrobial peptides and in several virus fusion proteins. An example of these fusion proteins is the HIV-1 envelop glycoprotein, the gp41. It is clear that the W residues are implicated in membrane perturbation and pore formation. The aim of this work was the investigation of the W residue role in such activities, using the nonlinear optic. First, we determined the W hyperpolarizabilité (nonlinear potential) by the Hyper Rayleigh Scattering (HRS). Then, the evolution of the nonlinear signal of small synthetic peptides, as function of the increasing number of their W residues, was demonstrated. These results allowed us to follow the W residue involvement of two peptides, K3W4 and gp41W, in the interaction with lipids monolayer at the air-water interface, using the second harmonic generation (SHG). The influence of such interaction in the peptide structure and orientation was determined using the PM-IRRAS. In conclusion, we showed the coherence between the SHG signal variation, due to the W orientation changes, and the PMIRRAS spectra modification, due to the gp41W helix orientation changes

Vidros teluritos são considerados fortes candidatos para aplicações em lasers e óptica não linear devido a importantes características, como o elevado índice de refração, baixa energia de fônons, baixa temperatura de transição vítrea e sua fácil preparação. Neste trabalho foram produzidas amostras dos sistemas vítreos TeO2- ZnO-Na2O, TeO2-Nb2O5-Na2O e Te2O-Na2O incluindo ou não dopagens de AgNO3 para estudos estruturais e ópticos. As propriedades estruturais e os mecanismos de recombinação destes vidros foram estudados por meio das técnicas de ressonância paramagnética eletrônica, termoluminescência e correntes de despolarização termicamente estimuladas. Já as propriedades ópticas como o coeficiente de absorção linear, índice de refração linear e não linear foram estudadas por meio das técnicas de absorção óptica, acoplamento de prismas e varredura Z. Foram ainda desenvolvidos estudos da precipitação de nanopartículas de prata para o sistema TeO2-ZnO-Na2O com dopagens de AgNO3 com diferentes temperaturas de tratamento térmico. A caracterização das nanopartículas metálicas foi realizada por meio da técnica de absorção óptica auxiliada por microscopia eletrônica de transmissão e espectrometria de energia dispersiva. Foram observadas por ressonância paramagnética eletrônica quatro respostas paramagnéticas dos vidros irradiados com raio , sendo uma de natureza desconhecida e as outras três identificadas como g¹, g² e g³ atribuídas respectivamente ao centro de buraco do telúrio e do oxigênio, centro de buraco do oxigênio terminal e centro de elétron do telúrio. Foi proposto ainda um modelo para explicar os mecanismos de formação destes centros. A partir dos resultados de termoluminescência observou-se que os processos de recombinação destes centros de defeitos são não radioativos. Neste projeto foram estudados pela primeira vez na literatura os fenômenos de polarização e despolarização em vidros teluritos, com e sem irradiação gama, por meio da técnica de correntes de despolarização termicamente estimuladas. Quanto às propriedades ópticas, foi investigada a influência da adição de prata dos sistemas vítreos TeO2-ZnO-Na2O e TeO2-Nb2O5-Na2O em relação à energia do gap, a cauda de Urbach, índice de refração linear e não linear.Nos resultados de varredura Z do sistema vítreo TeO2-Nb2O5-Na2O foi observado o aumento da assimetria na curva com aumento da adição de AgNO3 Este fenômeno foi explicado por meio de uma adaptação do modelo de Sumi para processos não radiativos, responsáveis pelo aumento do caráter térmico do índice de refração não linear. Por fim um modelo foi criado para explicar a precipitação de nanopartículas de prata na matriz vítrea TeO2-ZnO-Na2O mediante tratamento térmico.
Tellurite glasses are considered powerful candidates for applications in lasers and nonlinear optics due to their important properties such as high refractive index, low phonon energy, relatively low glass transition temperature and easy glass production at room atmosphere. In this work glass samples of the systems ZnO-Na2O, TeO2-Nb2O5-Na2O and Te2O-Na2O were produced, including or not the AgNO3 doping for the structural and optical study purposes. The structural properties and the recombination mechanisms of these glasses were studied by means of the techniques of electron paramagnetic resonance, thermoluminescence and thermally stimulated depolarization currents. The optical properties such as the optical linear absorption coefficient, linear and nonlinear refractive index were studied by means of the optical absorption techniques, prism coupling and Z-scan. Further studies were developed on the precipitation of silver nanoparticles embedded in the glass system TeO2-ZnO-Na2O doped with AgNO3, by means of thermal treatments at different temperatures. The characterization of the metallic nanoparticles was carried out by optical absorption aided by transmission electron microscopy and dispersive energy spectroscopy. Four paramagnetic responses were observed by electron paramagnetic resonance of the -irradiated glasses, one not yet identified and the other three identified as g0, g1 and g3 attributed respectively to the tellurium-oxygen hole center, non-bridging oxygen hole center and tellurium electron center. A model to explain the formation mechanisms of these centers was proposed. The thermoluminescence results indicated that the recombination processes of these centers are non-radiative. This is the first study that deals with polarization and depolarization phenomena in tellurite glasses with and without gamma irradiation, by the technique of thermally stimulated depolarization currents. In what regards the optical properties of the glass systems TeO2-ZnONa2O and TeO2-Nb2O5-Na2O, the effect of the silver doping on the gap energy, Urbach tail, linear and nonlinear refractive indices were investigated. Through the Z-scan technique results of the glass system TeO2-Nb2O5-Na2O, an increasing asymmetry of the curve, with increasing AgNO3 content was observed. This phenomenon was explained through an adaptation of Sumi´s model for non-radiative processes, applied to a silver doped insulating glass, to explain the thermal character of the nonlinear refractive index. Finally, a model was developed to explain the silver nanoparticles precipitation in the TeO2-ZnO-Na2O glass matrix submitted to thermal treatment.

Studio sull'applicabilità di tecniche ottiche lineari e nonlineari e metodi fotoacustici innovativi per l'analisi non invasiva (composizionale, strutturale e morfologica) di opere d'arte e per il monitoraggio di operazioni di restauro

碩士
國立虎尾科技大學
光電與材料科技研究所
100
In this study, we proposed a transmission-type three-dimensional optical microscope with nonlinear compensation. The method is based on the critical angle method and the use of CCD detection technology to measure the 3-D profile of a transparent specimen. When a beam passes through the transparent specimen, the surface height or the refractive index will change the beam directions causes its output ray deflect a slight angle. Afterward the rays are incident into a parallelogram prism at the critical angle nearby and cause the output intensity be changed. By the first-order optical approximation and the formula of internal reflection, the reflectivity of the prism is proportional to the surface height. We should use a CCD sensor to be located at the image plane to record the critical angle or total reflection images. Finally, using the Matlab program to analyze the surface height of the specimen, and conpensate the nonlinear error due to the nonlinear curve of reflectivity, the three-dimensional profile of the test specimen is obtained.

碩士
國立臺灣大學
光電工程學研究所
101
Nonlinear optical microscopy has been developed for many years. Due to the mechanism of nonlinear optics, the nonlinear signal can only be generated around the focus of the objective. Thus, this kind of microscopy is known for its optical virtual biopsy ability in comparison with the traditional wide field microscopy. The excitation light is infrared, which is not only less invasive but also provides better depth of penetration. Typical way to apply nonlinear optical microscopy is directly integrating a conventional microscope with a laser light source and some additional scanning mechanisms. However, it will make the whole system bulkier. In order to apply nonlinear optical microscopy in clinical applications, the system must be miniaturized and redesigned for more flexibility. In this thesis, the investigation is focused on the miniaturized imaging head. An optical imaging head with a miniaturized size, a larger field of view (FOV), and a video frame-rate is highly desired because a miniaturized system is more convenient to be manipulated during the observation and allows intravital applications. Larger field of view means we can reveal more information once simultaneously. Higher frame rate can not only deal with the image blurring problem resulted from vibrations but also allow one to reduce the imaging acquisition time, thus dynamic observation may be realized. Aspheric lenses, which are known for their complex lens surface profile designed for aberration reduction or replacement for a multi-lens system, are used in 3C products, such as cell phone cameras, optical disk drives, or laser diode collimators. With its smaller size and cheaper price, it could be an alternative to traditional objectives in miniaturized nonlinear microscopy systems. In this thesis, we present our investigation on the potential to use high numerical aperture mini aspheric lens (a blu-ray disk lens with 0.85 NA and a laser diode collimating lens with 0.8 NA) as the objective of the miniaturized nonlinear microscopy system. The structure of the system is very simple, and only five mirrors or lenses are used. The mini aspheric lens is integrated with a tube lens pair for beam size magnification. A MEMS mirror acts as a scanner, and a dichroic beam splitter separates the excitation light and the epi-collected signal. We investigate its performance for 2PF (two-photon fluorescence), SHG (second harmonic generation), and THG (third harmonic generation) microscopies. Live GFP (green fluorescence protein) zebrafish is used to estimate the feasibility of in-vivo experiment and the ability of dynamic observation. Comparison among different systems from other groups is also listed.

碩士
國立虎尾科技大學
光電與材料科技研究所
100
In this study, we proposes a non-scanning, non-interferometric, three- dimensional (3D) optical microscope based on geometric optics, and critical angle principle. According to the first-order optic approximation, the deflection angle of the reflection light from the test specimen is proportional to its surface height. In addition, the reflectance of a parallelogram prism is also proportional to the incident angle at the critical angle nearby. We used two charge-coupled devices (CCD) as cameras to record the images at the critical angle nearby and at the angle of total internal reflection, respectively, for making a reflectance profile. The reflectance profile can be transformed into the 3-D surface profile of the test surface. Because the reflectance curve versus the incident angle is nonlinear, the nonlinear-error compensation is need to do in order to reduce the error and to enhance the measurement accuracy. This is one of the focus in this study. The reflectance profile, obtained from CCDs, is the ratio of intensity recorded at the critical angle to the intensity recorded at the total internal reflection angle. The 3-D microscope provides a sub-micron measuring range with nanometer resolution in the axial direction and can also be used to measure roughness, film thickness or surface defects in real time.