Literatura académica sobre el tema "Microbial community structure"
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Artículos de revistas sobre el tema "Microbial community structure"
Peralta, Ariane L., Jeffrey W. Matthews y Angela D. Kent. "Microbial Community Structure and Denitrification in a Wetland Mitigation Bank". Applied and Environmental Microbiology 76, n.º 13 (7 de mayo de 2010): 4207–15. http://dx.doi.org/10.1128/aem.02977-09.
Texto completoOkita, Noriko, Toshihiro Hoaki, Sinya Suzuki y Masashi Hatamoto. "Characteristics of Microbial Community Structure at the Seafloor Surface of the Nankai Trough". Journal of Pure and Applied Microbiology 13, n.º 4 (30 de diciembre de 2019): 1917–28. http://dx.doi.org/10.22207/jpam.13.4.04.
Texto completoCheng, C., D. Zhao, D. Lv, S. Li y G. Du. "Comparative study on microbial community structure across orchard soil, cropland soil, and unused soil". Soil and Water Research 12, No. 4 (9 de octubre de 2017): 237–45. http://dx.doi.org/10.17221/177/2016-swr.
Texto completoPérez-Brandán, C., J. Huidobro, M. Galván, S. Vargas-Gil y Meriles JM. "Relationship between microbial functions and community structure following agricultural intensification in South American Chaco". Plant, Soil and Environment 62, No. 7 (24 de julio de 2016): 321–28. http://dx.doi.org/10.17221/19/2016-pse.
Texto completoFindlay, Robert H., Christine Yeates, Meredith A. J. Hullar, David A. Stahl y Louis A. Kaplan. "Biome-Level Biogeography of Streambed Microbiota". Applied and Environmental Microbiology 74, n.º 10 (31 de marzo de 2008): 3014–21. http://dx.doi.org/10.1128/aem.01809-07.
Texto completoTankere, S. P. C., D. G. Bourne, F. L. L. Muller y V. Torsvik. "Microenvironments and microbial community structure in sediments". Environmental Microbiology 4, n.º 2 (febrero de 2002): 97–105. http://dx.doi.org/10.1046/j.1462-2920.2002.00274.x.
Texto completoBach, Lisbet Holm, John-Arvid Grytnes, Rune Halvorsen y Mikael Ohlson. "Tree influence on soil microbial community structure". Soil Biology and Biochemistry 42, n.º 11 (noviembre de 2010): 1934–43. http://dx.doi.org/10.1016/j.soilbio.2010.07.002.
Texto completoSCHIMEL, JOSHUA P. y JAY GULLEDGE. "Microbial community structure and global trace gases". Global Change Biology 4, n.º 7 (octubre de 1998): 745–58. http://dx.doi.org/10.1046/j.1365-2486.1998.00195.x.
Texto completoFuhrman, Jed A. "Microbial community structure and its functional implications". Nature 459, n.º 7244 (mayo de 2009): 193–99. http://dx.doi.org/10.1038/nature08058.
Texto completoGao, Yang, Xiuwei Wang, Zijun Mao, Liu Yang, Zhiyan Jiang, Xiangwei Chen y Doug P. Aubrey. "Changes in Soil Microbial Community Structure Following Different Tree Species Functional Traits Afforestation". Forests 12, n.º 8 (30 de julio de 2021): 1018. http://dx.doi.org/10.3390/f12081018.
Texto completoTesis sobre el tema "Microbial community structure"
Friedman, Jonathan Ph D. Massachusetts Institute of Technology. "Microbial adaptation, differentiation, and community structure". Thesis, Massachusetts Institute of Technology, 2013. http://hdl.handle.net/1721.1/81751.
Texto completoThis electronic version was submitted by the student author. The certified thesis is available in the Institute Archives and Special Collections.
Cataloged from student-submitted PDF version of thesis.
Includes bibliographical references (p. 112-119).
Microbes play a central role in diverse processes ranging from global elemental cycles to human digestion. Understanding these complex processes requires a rm under- standing of the interplay between microbes and their environment. In this thesis, we utilize sequencing data to study how individual species adapt to different niches, and how species assemble to form communities. First, we study the potential temperature and salinity range of 16 marine Vibrio strains. We nd that salinity tolerance is at odds with the strains' natural habitats, and provide evidence that this incongruence may be explained by a molecular coupling between salinity and temperature tolerance. Next, we investigate the genetic basis of bacterial ecological differentiation by analyzing the genomes of two closely related, yet ecologically distinct populations of Vibrio splendidus. We nd that most loci recombine freely across habitats, and that ecological differentiation is likely driven by a small number of habitat-specic alle-les. We further present a model for bacterial sympatric speciation. Our simulations demonstrate that a small number of adaptive loci facilitates speciation, due to the op- posing roles horizontal gene transfer (HGT) plays throughout the speciation process: HGT initially promotes speciation by bringing together multiple adaptive alleles, but later hinders it by mixing alleles across habitats. Finally, we introduce two tools for analyzing genomic survey data: SparCC, which infers correlations between taxa from relative abundance data; and StrainFinder, which extracts strain-level information from metagenomic data. Employing these tools, we infer a rich ecological network connecting hundreds of interacting species across 18 sites on the human body, and show that 16S-defined groups are rarely composed of a single dominant strain.
by Jonathan Friedman.
Ph.D.
Hagley, Karen Jane. "Microbial community structure in sports turf soils". Thesis, Royal Holloway, University of London, 2003. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.402548.
Texto completoDatta, Manoshi Sen. "Microbial community structure and dynamics on patchy landscapes". Thesis, Massachusetts Institute of Technology, 2016. http://hdl.handle.net/1721.1/104464.
Texto completoThis electronic version was submitted by the student author. The certified thesis is available in the Institute Archives and Special Collections.
Cataloged from student-submitted PDF version of thesis.
Includes bibliographical references (pages 139-156).
Microbes are tiny metabolic engines with large-scale effects on industry, the environment, and human health. Understanding how the micron-scale actions (and interactions) of individual microbes give rise to macro-scale consequences remains a major challenge in microbial ecology. However, for the most part, studies employ coarsegrained sampling schemes, which average over the heterogeneous microscopic structure of microbial communities. This has limited our ability to establish mechanistic links between dynamics occurring across these disparate spatial scales. However, such links are critical for (a) making sense of the tremendous extant microbial diversity on Earth, and (b) predicting how perturbations (e.g., global climate change) may influence microbial diversity and function. In this thesis, I characterize the structure and dynamics of wild bacterial populations in the ocean at spatial scales of tens of microns. I then employ a simple, two-strain laboratory model system to link (cooperative) inter-species interactions at local scales to emergent properties at larger scales, focusing on spatially connected meta-communities undergoing range expansions into new territory. This work encompasses diverse environments (ranging from well-mixed communities in the laboratory to individual crustaceans) and approaches (including mathematical modeling, highthroughput sequencing, and traditional microbiological experiments). Altogether, we find that the microscale environment inhabited by a microbe - that is, "what the neighborhood is like" and "who lives next to whom" - shapes the structure and dynamics of wild microbial populations at local scales. Moreover, these local interactions can drive patterns of biodiversity and function, even at spatial scales much larger than the length of an individual cell. Thus, our work represents a small step toward developing mechanistic theories for how microbes shape our planet's ecosystems.
by Manoshi Sen Datta.
Ph. D.
Ries, Mackenzie Lynn. "The Effect of Salinity on Soil Microbial Community Structure". Thesis, North Dakota State University, 2020. https://hdl.handle.net/10365/31807.
Texto completoSudini, Hari Kishan Huettel Robin Norton. "Soil microbial community structure and aflatoxin contamination of peanuts". Auburn, Ala., 2009. http://hdl.handle.net/10415/1875.
Texto completoVan, Blerk Gerhardus Nicolas. "Microbial community structure and dynamics within sulphate- removing bioreactors". Diss., Pretoria : [s.n.], 2009. http://upetd.up.ac.za/thesis/available/etd-08122009-132505.
Texto completoHiggins, Logan Massie. "Insights into microbial community structure from pairwise interaction networks". Thesis, Massachusetts Institute of Technology, 2017. http://hdl.handle.net/1721.1/113465.
Texto completoCataloged from PDF version of thesis.
Includes bibliographical references.
Microbial communities are typically incredibly diverse, with many species contributing to the overall function of the community. The structure of these communities is the result of many complex biotic and abiotic factors. In this thesis, my colleagues and I employ a bottom-up approach to investigate the role of interspecies interactions in determining the structure of multispecies communities. First, we investigate the network of pairwise competitive interactions in a model community consisting of 20 strains of naturally co-occurring soil bacteria. The resulting interaction network is strongly hierarchical and lacks significant non-transitive motifs, a result that is robust across multiple environments. Multispecies competitions resulted in extinction of all but the most highly competitive strains, indicating that higher order interactions do not play a major role in structuring this community.
Given the lack of non-transitivity and higher order interactions in vitro, we conclude that other factors such as temporal or spatial heterogeneity must be at play in determining the ability of these strains to coexist in nature. Next, we propose a simple, qualitative assembly rule that predicts community structure from the outcomes of competitions between small sets of species, and experimentally assess its predictive power using synthetic microbial communities composed of up to eight soil bacterial species. Nearly all competitions resulted in a unique, stable community, whose composition was independent of the initial species fractions. Survival in three-species competitions was predicted by the pairwise outcomes with an accuracy of ~90%. Obtaining a similar level of accuracy in competitions between sets of seven or all eight species required incorporating additional information regarding the outcomes of the three-species competitions.
These results demonstrate experimentally the ability of a simple bottom-up approach to predict the structure of communities and illuminate the factors that determine their composition.
by Logan Massie Higgins.
Ph. D.
Ph.D. Massachusetts Institute of Technology, Department of Biology
Moynihan, Emma Louise. "Interactions between microbial community structure and pathogen survival in soil". Thesis, Cranfield University, 2012. http://dspace.lib.cranfield.ac.uk/handle/1826/7297.
Texto completoDurno, W. Evan. "Precise correlation and metagenomic binning uncovers fine microbial community structure". Thesis, University of British Columbia, 2017. http://hdl.handle.net/2429/62360.
Texto completoScience, Faculty of
Graduate
Perez, Sarah Isa Esther. "Exploring microbial community structure and resilience through visualization and analysis of microbial co-occurrence networks". Thesis, University of British Columbia, 2015. http://hdl.handle.net/2429/53928.
Texto completoScience, Faculty of
Graduate
Libros sobre el tema "Microbial community structure"
1959-, Allison D. G. y Society for General Microbiology, eds. Community structure and co-operation in biofilms. Cambridge, UK: Cambridge University Press, 2000.
Buscar texto completoEdgerton, Deborah L. An investigation of the interrelationship between the microbial community and soil structure in soils disturbed by opencast mining.. London: University of East London, 1997.
Buscar texto completoNemergut, Diana Reid, Ashley Shade y Cyrille Violle, eds. The causes and consequences of microbial community structure. Frontiers SA Media, 2015. http://dx.doi.org/10.3389/978-2-88919-361-5.
Texto completoKirchman, David L. Community structure of microbes in natural environments. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.003.0004.
Texto completoSutton, Susan Dee. Determinants of sedimentary microbial biomass and community structure in two temperate streams. 2000.
Buscar texto completoStructure of Microbial Community in Soils Contaminated with Heavy Metals Assessed by Culture and Fatty Acid Approaches. Wydawnictwo Uniwersytetu Slaskiego, 2005.
Buscar texto completoCapítulos de libros sobre el tema "Microbial community structure"
Garland, Jay L., K. L. Cook, C. A. Loader y B. A. Hungate. "The Influence of Microbial Community Structure and Function on Community-Level Physiological Profiles". En Microbial Communities, 171–83. Berlin, Heidelberg: Springer Berlin Heidelberg, 1997. http://dx.doi.org/10.1007/978-3-642-60694-6_16.
Texto completoSchimel, J. "Ecosystem Consequences of Microbial Diversity and Community Structure". En Ecological Studies, 239–54. Berlin, Heidelberg: Springer Berlin Heidelberg, 1995. http://dx.doi.org/10.1007/978-3-642-78966-3_17.
Texto completoFindlay, Robert H. "The use of phospholipid fatty acids to determine microbial community structure". En Molecular Microbial Ecology Manual, 77–93. Dordrecht: Springer Netherlands, 1996. http://dx.doi.org/10.1007/978-94-009-0215-2_7.
Texto completoNancy, Jaspreet Kaur Boparai y Pushpender Kumar Sharma. "Metatranscriptomics: A Promising Tool to Depict Dynamics of Microbial Community Structure and Function". En Microbial Metatranscriptomics Belowground, 471–91. Singapore: Springer Singapore, 2021. http://dx.doi.org/10.1007/978-981-15-9758-9_22.
Texto completoFindlay, Robert H. "Section 4 update: Determination of microbial community structure using phospholipid fatty acid profiles". En Molecular Microbial Ecology Manual, 2885–906. Dordrecht: Springer Netherlands, 2008. http://dx.doi.org/10.1007/978-1-4020-2177-0_408.
Texto completoRastogi, Gurdeep y Rajesh K. Sani. "Molecular Techniques to Assess Microbial Community Structure, Function, and Dynamics in the Environment". En Microbes and Microbial Technology, 29–57. New York, NY: Springer New York, 2011. http://dx.doi.org/10.1007/978-1-4419-7931-5_2.
Texto completoKeegan, Kevin P., Elizabeth M. Glass y Folker Meyer. "MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function". En Microbial Environmental Genomics (MEG), 207–33. New York, NY: Springer New York, 2016. http://dx.doi.org/10.1007/978-1-4939-3369-3_13.
Texto completoWard, David M., Michael J. Ferris, Stephen C. Nold, Mary M. Bateson, Eric D. Kopczynski y Alyson L. Ruff-Roberts. "Species diversity in hot spring microbial mats as revealed by both molecular and enrichment culture approaches — relationship between biodiversity and community structure". En Microbial Mats, 33–44. Berlin, Heidelberg: Springer Berlin Heidelberg, 1994. http://dx.doi.org/10.1007/978-3-642-78991-5_3.
Texto completovan Nostrand, Joy D., Zhili He y Jizhong Zhou. "GeoChip: A High-Throughput Metagenomics Technology for Dissecting Microbial Community Functional Structure". En Handbook of Molecular Microbial Ecology I, 507–19. Hoboken, NJ, USA: John Wiley & Sons, Inc., 2011. http://dx.doi.org/10.1002/9781118010518.ch57.
Texto completoArtz, Rebekka R. E. "Microbial Community Structure and Carbon Substrate use in Northern Peatlands". En Carbon Cycling in Northern Peatlands, 111–29. Washington, D. C.: American Geophysical Union, 2013. http://dx.doi.org/10.1029/2008gm000806.
Texto completoActas de conferencias sobre el tema "Microbial community structure"
Davis, Madison C. "MICROBIAL COMMUNITY STRUCTURE OF A STRATIFIED ANCHIALINE SINKHOLE". En GSA Annual Meeting in Seattle, Washington, USA - 2017. Geological Society of America, 2017. http://dx.doi.org/10.1130/abs/2017am-300326.
Texto completoSun, Juan, Ning Wang, Xiaoqing Yang, Xiuzhi Zheng, Zuxian Yu y Tong Zhang. "Microbial Community Structure and Distribution Characteristics in Oil Contaminated Soil". En Goldschmidt2020. Geochemical Society, 2020. http://dx.doi.org/10.46427/gold2020.2500.
Texto completoHe, Shuying, Jixiang Li, Yatong Xu, Erkun Hu y Haizhen Yang. "Study on Microbial Community Structure of Immersed Biofilter in Urban River". En 2010 4th International Conference on Bioinformatics and Biomedical Engineering (iCBBE). IEEE, 2010. http://dx.doi.org/10.1109/icbbe.2010.5515434.
Texto completoHe, Shuying, Jixiang Li y Yatong Xu. "Microbial Community Structure of Biological Contact Oxidation Process Used in Landscape River". En 2009 3rd International Conference on Bioinformatics and Biomedical Engineering (iCBBE). IEEE, 2009. http://dx.doi.org/10.1109/icbbe.2009.5163050.
Texto completoShi, Xiang, Julia R. de Rezende y Kenneth Sorbie. "Microbial Ecology Metrics to Assess the Effect of Biocide on Souring Control and Improve Souring Modelling". En SPE International Oilfield Corrosion Conference and Exhibition. SPE, 2021. http://dx.doi.org/10.2118/205037-ms.
Texto completoZhang, Qing, Guohua Chang, Tian-Peng Gao, Huyuan Zhang y Haili Sun. "Microbial Community Structure Diversity in Different Sludge Used as Reducing Barrier for Tailings". En 2019 IEEE International Conference on Architecture, Construction, Environment and Hydraulics (ICACEH). IEEE, 2019. http://dx.doi.org/10.1109/icaceh48424.2019.9041841.
Texto completoZhao, Wenjing, Qian Zhang, Zhongyu Du, Xiangyu Xu y Zhenquan Li. "Variations in rhizosphere microbial community structure of bulrush in Wusong estuarine wetland, Shanghai". En 2018 7th International Conference on Energy, Environment and Sustainable Development (ICEESD 2018). Paris, France: Atlantis Press, 2018. http://dx.doi.org/10.2991/iceesd-18.2018.79.
Texto completoWilliam C Rice, Amber M Mason, N Andy Cole y R Nolan Clark. "The Influence of Feedlot Pen Surface Layers on Microbial Community Structure and Diversity". En International Symposium on Air Quality and Waste Management for Agriculture, 16-19 September 2007, Broomfield, Colorado. St. Joseph, MI: American Society of Agricultural and Biological Engineers, 2007. http://dx.doi.org/10.13031/2013.23907.
Texto completo"Novel archaeal metagenome assembled genomes from acidophilic microbial community of Parys Mountain copper mine (UK)". En Bioinformatics of Genome Regulation and Structure/ Systems Biology. institute of cytology and genetics siberian branch of the russian academy of science, Novosibirsk State University, 2020. http://dx.doi.org/10.18699/bgrs/sb-2020-136.
Texto completoAl-najjar, Mohammad, Artur Fink, Christopher Munday, Waleed Hamza, Ibrahim Al-ansari, Ismail Al-shaikh, Jan-berend Stuut et al. "Effect Of Dust On The Microbial Community Structure And Function In The Arabian Gulf". En Qatar Foundation Annual Research Conference Proceedings. Hamad bin Khalifa University Press (HBKU Press), 2014. http://dx.doi.org/10.5339/qfarc.2014.eepp0541.
Texto completoInformes sobre el tema "Microbial community structure"
Siebers, A., S. Singer y M. Thelen. Analyzing the Structure and Function of Novel Cytochromes from a Natural Microbial Community. Office of Scientific and Technical Information (OSTI), agosto de 2006. http://dx.doi.org/10.2172/900122.
Texto completoHe, Zhili, Ye Deng, Joy Van Nostrand, Qichao Tu, Meiying Xu, Chris Hemme, Liyou Wu et al. GeoChip 3.0: A High Throughput Tool for Analyzing Microbial Community, Composition, Structure, and Functional Activity. Office of Scientific and Technical Information (OSTI), mayo de 2010. http://dx.doi.org/10.2172/986221.
Texto completoBalkwill, David L. Vadose zone microbial community structure and activity in metal/radionuclide contaminated sediments. Final technical report. Office of Scientific and Technical Information (OSTI), agosto de 2002. http://dx.doi.org/10.2172/807073.
Texto completoVan Nostrand, Joy, P. Waldron, W. Wu, B. Zhou, Liyou Wu, Ye Deng, J. Carley et al. Effects of Nitrate Exposure on the Functional Structure of a Microbial Community in a Uranium-contaminated Aquifer. Office of Scientific and Technical Information (OSTI), mayo de 2010. http://dx.doi.org/10.2172/985928.
Texto completoWong, S., C. Jeans y M. Thelen. A Study of the Structure and Metabolic Processes of a Novel Membrane Cytochrome in an Extreme Microbial Community. Office of Scientific and Technical Information (OSTI), septiembre de 2006. http://dx.doi.org/10.2172/894351.
Texto completoBuckley, Daniel. Microbial food web mapping: linking carbon cycling and community structure in soils through pyrosequencing enabled stable isotope probing. Office of Scientific and Technical Information (OSTI), marzo de 2015. http://dx.doi.org/10.2172/1172474.
Texto completoWhite, D. C. y D. B. Ringelberg. Signature lipid biomarkers for in situ microbial biomass, community structure and nutritional status of deep subsurface microbiota in relation to geochemical gradients. Final technical report. Office of Scientific and Technical Information (OSTI), febrero de 1998. http://dx.doi.org/10.2172/578585.
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