Artículos de revistas sobre el tema "Ion-RNA Interactions"
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Yu, Tao, Yuhong Zhu, Zhaojian He y Shi-Jie Chen. "Predicting Molecular Crowding Effects in Ion–RNA Interactions". Journal of Physical Chemistry B 120, n.º 34 (12 de agosto de 2016): 8837–44. http://dx.doi.org/10.1021/acs.jpcb.6b05625.
Texto completoEdwards, Thomas E. y Snorri Th Sigurdsson. "EPR spectroscopic analysis of TAR RNA–metal ion interactions". Biochemical and Biophysical Research Communications 303, n.º 2 (abril de 2003): 721–25. http://dx.doi.org/10.1016/s0006-291x(03)00411-x.
Texto completoFingerhut, Benjamin P., Eva M. Bruening, Jakob Schauss, Torsten Siebert y Thomas Elsaesser. "Interactions of RNA and Water probed by 2D-IR Spectroscopy". EPJ Web of Conferences 205 (2019): 10003. http://dx.doi.org/10.1051/epjconf/201920510003.
Texto completoEdwards, Thomas E., Tamara M. Okonogi y Snorri Th Sigurdsson. "Investigation of RNA-Protein and RNA-Metal Ion Interactions by Electron Paramagnetic Resonance Spectroscopy". Chemistry & Biology 9, n.º 6 (junio de 2002): 699–706. http://dx.doi.org/10.1016/s1074-5521(02)00150-3.
Texto completoNguyen, Hung T., Naoto Hori y D. Thirumalai. "Theory and simulations for RNA folding in mixtures of monovalent and divalent cations". Proceedings of the National Academy of Sciences 116, n.º 42 (30 de septiembre de 2019): 21022–30. http://dx.doi.org/10.1073/pnas.1911632116.
Texto completoLe, Shu-Yun, Jih-H. Chen, N. Pattabiraman y Jacob V. Maizel. "Ion-RNA Interactions in the RNA Pseudoknot of a Ribosomal Frameshifting Site: Molecular Modeling Studies". Journal of Biomolecular Structure and Dynamics 16, n.º 1 (agosto de 1998): 1–11. http://dx.doi.org/10.1080/07391102.1998.10508221.
Texto completoWu, Yuan-Yan, Zhong-Liang Zhang, Jin-Si Zhang, Xiao-Long Zhu y Zhi-Jie Tan. "Multivalent ion-mediated nucleic acid helix-helix interactions: RNA versus DNA". Nucleic Acids Research 43, n.º 12 (27 de mayo de 2015): 6156–65. http://dx.doi.org/10.1093/nar/gkv570.
Texto completoKhan, Mateen A. "Analysis of Ion and pH Effects on Iron Response Element (IRE) and mRNA-Iron Regulatory Protein (IRP1) Interactions". Current Chemical Biology 14, n.º 2 (19 de noviembre de 2020): 88–99. http://dx.doi.org/10.2174/2212796814999200604121937.
Texto completoLemkul, Justin A. "Same fold, different properties: polarizable molecular dynamics simulations of telomeric and TERRA G-quadruplexes". Nucleic Acids Research 48, n.º 2 (6 de diciembre de 2019): 561–75. http://dx.doi.org/10.1093/nar/gkz1154.
Texto completoKleiman, Diego E., Nawavi Naleem y Serdal Kirmizialtin. "Exploring the Ion-Mediated RNA Interactions of a Helix-Junction-Helix RNA Model through Well-Tempered Metadynamics Simulations". Biophysical Journal 118, n.º 3 (febrero de 2020): 68a—69a. http://dx.doi.org/10.1016/j.bpj.2019.11.549.
Texto completoKumar, Anil. "Ionic interactions in aqueous mixtures of hydrophilic and -phobic ions". Pure and Applied Chemistry 80, n.º 6 (1 de enero de 2008): 1267–79. http://dx.doi.org/10.1351/pac200880061267.
Texto completoTrachman, Robert J. y Adrian R. Ferré-D'Amaré. "An uncommon [K+(Mg2+)2] metal ion triad imparts stability and selectivity to the Guanidine-I riboswitch". RNA 27, n.º 10 (13 de julio de 2021): 1257–64. http://dx.doi.org/10.1261/rna.078824.121.
Texto completoSzulc, Natalia A., Zuzanna Mackiewicz, Janusz M. Bujnicki y Filip Stefaniak. "fingeRNAt—A novel tool for high-throughput analysis of nucleic acid-ligand interactions". PLOS Computational Biology 18, n.º 6 (2 de junio de 2022): e1009783. http://dx.doi.org/10.1371/journal.pcbi.1009783.
Texto completoLiu, Chuanliang, Ljiljana Paša Tolić, Steven A. Hofstadler, Amy C. Harms, Richard D. Smith, ChulHee Kang y Nanda Sinha. "Probing RegA/RNA Interactions Using Electrospray Ionization–Fourier Transform Ion Cyclotron Resonance–Mass Spectrometry". Analytical Biochemistry 262, n.º 1 (agosto de 1998): 67–76. http://dx.doi.org/10.1006/abio.1998.2753.
Texto completoEtzion-Fuchs, Anat, David A. Todd y Mona Singh. "dSPRINT: predicting DNA, RNA, ion, peptide and small molecule interaction sites within protein domains". Nucleic Acids Research 49, n.º 13 (17 de mayo de 2021): e78-e78. http://dx.doi.org/10.1093/nar/gkab356.
Texto completoGräf, S., R. Przybilski, G. Steger y C. Hammann. "A database search for hammerhead ribozyme motifs". Biochemical Society Transactions 33, n.º 3 (1 de junio de 2005): 477–78. http://dx.doi.org/10.1042/bst0330477.
Texto completoFingerhut, Benjamin P., Jakob Schauss, Achintya Kundu y Thomas Elsaesser. "Aqueous Contact Ion Pairs of Phosphate Groups with Na+, Ca2+ and Mg2+ – Structural Discrimination by Femtosecond Infrared Spectroscopy and Molecular Dynamics Simulations". Zeitschrift für Physikalische Chemie 234, n.º 7-9 (27 de agosto de 2020): 1453–74. http://dx.doi.org/10.1515/zpch-2020-1614.
Texto completoBuskiewicz, Iwona, Malgorzata Giel-Pietraszuk, Piotr Mucha, Piotr Rekowski, Gotfryd Kupryszewski y Miroslawa Z. Barciszewska. "Interaction of HIV Tat Peptides With tRNAPhe from Yeast". Collection of Czechoslovak Chemical Communications 63, n.º 6 (1998): 842–50. http://dx.doi.org/10.1135/cccc19980842.
Texto completoXu, Xiaochen, Michaela Egger, Hao Chen, Karolina Bartosik, Ronald Micura y Aiming Ren. "Insights into xanthine riboswitch structure and metal ion-mediated ligand recognition". Nucleic Acids Research 49, n.º 12 (14 de junio de 2021): 7139–53. http://dx.doi.org/10.1093/nar/gkab486.
Texto completoHuang, Lin, Jia Wang, Andrew M. Watkins, Rhiju Das y David M. J. Lilley. "Structure and ligand binding of the glutamine-II riboswitch". Nucleic Acids Research 47, n.º 14 (19 de junio de 2019): 7666–75. http://dx.doi.org/10.1093/nar/gkz539.
Texto completoMarkelova, O. Yu, L. N. Buryanovsky, O. E. Kitam, K. F. Krasnova y A. D. Shved. "Influence of ion interactions on the conformation of ribozyme specific to HIV-1 tat-RNA in solution". Biopolymers and Cell 18, n.º 5 (20 de septiembre de 2002): 452–54. http://dx.doi.org/10.7124/bc.000627.
Texto completoLiu, Bin, Yuhong Zuo y Thomas A. Steitz. "Structures of E. coli σS-transcription initiation complexes provide new insights into polymerase mechanism". Proceedings of the National Academy of Sciences 113, n.º 15 (28 de marzo de 2016): 4051–56. http://dx.doi.org/10.1073/pnas.1520555113.
Texto completoLee, Ji-Hye, Intekhab Alam, Kang Rok Han, Sunyoung Cho, Sungho Shin, Seokha Kang, Jai Myung Yang y Kyung Hyun Kim. "Crystal structures of murine norovirus-1 RNA-dependent RNA polymerase". Journal of General Virology 92, n.º 7 (1 de julio de 2011): 1607–16. http://dx.doi.org/10.1099/vir.0.031104-0.
Texto completoKaye, Nicholas M., Nathan H. Zahler, Eric L. Christian y Michael E. Harris. "Conservation of Helical Structure Contributes to Functional Metal Ion Interactions in the Catalytic Domain of Ribonuclease P RNA". Journal of Molecular Biology 324, n.º 3 (noviembre de 2002): 429–42. http://dx.doi.org/10.1016/s0022-2836(02)01094-x.
Texto completoSun, Yunhao, Limin Qiu, Jinjin Chen, Yao Wang, Jun Qian, Lirong Huang y Haitao Ma. "Construction of circRNA-Associated ceRNA Network Reveals Novel Biomarkers for Esophageal Cancer". Computational and Mathematical Methods in Medicine 2020 (28 de agosto de 2020): 1–12. http://dx.doi.org/10.1155/2020/7958362.
Texto completoBonneau, Eric y Pascale Legault. "NMR Localization of Divalent Cations at the Active Site of theNeurosporaVS Ribozyme Provides Insights into RNA–Metal-Ion Interactions". Biochemistry 53, n.º 3 (10 de enero de 2014): 579–90. http://dx.doi.org/10.1021/bi401484a.
Texto completoRooj, Arun K., Zhiyong Liu, Carmel M. McNicholas y Catherine M. Fuller. "Physical and functional interactions between a glioma cation channel and integrin-β1 require α-actinin". American Journal of Physiology-Cell Physiology 309, n.º 5 (1 de septiembre de 2015): C308—C319. http://dx.doi.org/10.1152/ajpcell.00036.2015.
Texto completoMitash, Nilay, Joshua E. Donovan y Agnieszka Swiatecka-Urban. "The Role of MicroRNA in the Airway Surface Liquid Homeostasis". International Journal of Molecular Sciences 21, n.º 11 (28 de mayo de 2020): 3848. http://dx.doi.org/10.3390/ijms21113848.
Texto completoXu, Jiayang, Qiansi Chen, Pingping Liu, Wei Jia, Zheng Chen y Zicheng Xu. "Integration of mRNA and miRNA Analysis Reveals the Molecular Mechanism Underlying Salt and Alkali Stress Tolerance in Tobacco". International Journal of Molecular Sciences 20, n.º 10 (14 de mayo de 2019): 2391. http://dx.doi.org/10.3390/ijms20102391.
Texto completode Assis Filho, F. M., O. R. Paguio, J. L. Sherwood y C. M. Deom. "Symptom induction by Cowpea chlorotic mottle virus on Vigna unguiculata is determined by amino acid residue 151 in the coat protein". Journal of General Virology 83, n.º 4 (1 de abril de 2002): 879–83. http://dx.doi.org/10.1099/0022-1317-83-4-879.
Texto completoVijayaraghavan, Bhooma, Giri Padmanabhan y Kumaresan Ramanathan. "Assessment of siRNA as a therapeutic molecule in Transient Receptor Potential Channel 5 gene silencing: a computational approach". Biomedical Research and Therapy 5, n.º 1 (19 de enero de 2018): 1911–22. http://dx.doi.org/10.15419/bmrat.v5i1.405.
Texto completoLiao, Zengwei, Takuji Oyama, Yumi Kitagawa, Katsuo Katayanagi, Kosuke Morikawa y Masayuki Oda. "Pivotal role of a conserved histidine in Escherichia coli ribonuclease HI as proposed by X-ray crystallography". Acta Crystallographica Section D Structural Biology 78, n.º 3 (23 de febrero de 2022): 390–98. http://dx.doi.org/10.1107/s2059798322000870.
Texto completoPagliari, Laura, Giulia Tarquini, Alberto Loschi, Sara Buoso, Gregor Kapun, Paolo Ermacora y Rita Musetti. "Gimme shelter: three-dimensional architecture of the endoplasmic reticulum, the replication site of grapevine Pinot gris virus". Functional Plant Biology 48, n.º 10 (2021): 1074. http://dx.doi.org/10.1071/fp21084.
Texto completoFerrero, Diego S., Michela Falqui y Nuria Verdaguer. "Snapshots of a Non-Canonical RdRP in Action". Viruses 13, n.º 7 (28 de junio de 2021): 1260. http://dx.doi.org/10.3390/v13071260.
Texto completoGuo, Shaoke, Mengli Cao, Xingdong Wang, Lin Xiong, Xiaoyun Wu, Pengjia Bao, Min Chu et al. "Changes in Transcriptomic Profiles in Different Reproductive Periods in Yaks". Biology 10, n.º 12 (25 de noviembre de 2021): 1229. http://dx.doi.org/10.3390/biology10121229.
Texto completoPeng, Guiqing, Yan Yan, Chengliang Zhu, Shiqun Wang, Xiaohong Yan, Lili Lu, Wei Li et al. "Borna Disease Virus P Protein Affects Neural Transmission through Interactions with Gamma-Aminobutyric Acid Receptor-Associated Protein". Journal of Virology 82, n.º 24 (24 de septiembre de 2008): 12487–97. http://dx.doi.org/10.1128/jvi.00877-08.
Texto completoAndreeva, Tatyana V., Natalya V. Maluchenko, Anastasiia L. Sivkina, Oleg V. Chertkov, Maria E. Valieva, Elena Y. Kotova, Mikhail P. Kirpichnikov, Vasily M. Studitsky y Alexey V. Feofanov. "Na+ and K+ Ions Differently Affect Nucleosome Structure, Stability, and Interactions with Proteins". Microscopy and Microanalysis 28, n.º 1 (1 de diciembre de 2021): 243–53. http://dx.doi.org/10.1017/s1431927621013751.
Texto completoNeuman, Benjamin W., Jeremiah S. Joseph, Kumar S. Saikatendu, Pedro Serrano, Amarnath Chatterjee, Margaret A. Johnson, Lujian Liao et al. "Proteomics Analysis Unravels the Functional Repertoire of Coronavirus Nonstructural Protein 3". Journal of Virology 82, n.º 11 (26 de marzo de 2008): 5279–94. http://dx.doi.org/10.1128/jvi.02631-07.
Texto completoAcharya, Parag y Jyoti Chattopadhyaya. "Electrostatic cross-modulation of the pseudoaromatic character in single-stranded RNA by nearest-neighbor interactions". Pure and Applied Chemistry 77, n.º 1 (1 de enero de 2005): 291–311. http://dx.doi.org/10.1351/pac200577010291.
Texto completoHwang, William L., Karthik Jagadeesh, Jimmy Guo, Hannah I. Hoffman, Orr Ashenberg, Eugene Drokhlyansky, Nicholas Van Wittenberghe et al. "Single-nucleus RNA-seq of frozen archival primary pancreatic ductal adenocarcinoma uncovers multi-compartment intratumoral heterogeneity associated with neoadjuvant treatment." Journal of Clinical Oncology 38, n.º 15_suppl (20 de mayo de 2020): 4633. http://dx.doi.org/10.1200/jco.2020.38.15_suppl.4633.
Texto completoWan Othman, Wan N. Nazneem, Fatimah Salim, Nor N. Abdullah, Syahrul I. Abu Bakar, Khalijah Awang, Lalith Jayasinghe y Nor H. Ismail. "(R)-13aα-Densiindolizidine, A New Phenanthroindolizidine Alkaloid From Cryptocarya densiflora Blume (Lauraceae) and Molecular Docking Against SARS-CoV-2". Natural Product Communications 17, n.º 8 (agosto de 2022): 1934578X2211142. http://dx.doi.org/10.1177/1934578x221114227.
Texto completoLopez, Melany N., Timothy J. Wilding y James E. Huettner. "Q/R site interactions with the M3 helix in GluK2 kainate receptor channels revealed by thermodynamic mutant cycles". Journal of General Physiology 142, n.º 3 (12 de agosto de 2013): 225–39. http://dx.doi.org/10.1085/jgp.201311000.
Texto completoStevens, Adam, Taqua Khashkhusha, Megan Sharps, Terence Garner, Peter T. Ruane y John D. Aplin. "The Human Early Maternal–Embryonic Interactome". Reproductive Medicine 4, n.º 1 (16 de febrero de 2023): 40–56. http://dx.doi.org/10.3390/reprodmed4010006.
Texto completoBiedermann, Johann, Sebastian Braunbeck, Andrew J. R. Plested y Han Sun. "Nonselective cation permeation in an AMPA-type glutamate receptor". Proceedings of the National Academy of Sciences 118, n.º 8 (18 de febrero de 2021): e2012843118. http://dx.doi.org/10.1073/pnas.2012843118.
Texto completoLi, Hui, Yaxin Yang, Qianlan Wang, Haoran Li, Wu Wang, Huan Zheng y Jianmin Tao. "Genome-Wide Identification of ATP-Binding Cassette (ABC) Transporter Provides Insight to Genes Related to Anthocyanin Transportation in New Teinturier Grape Germplasm ‘ZhongShan-HongYu’". Horticulturae 9, n.º 5 (24 de abril de 2023): 532. http://dx.doi.org/10.3390/horticulturae9050532.
Texto completoBanerjee, Manidipa, Jeffrey A. Speir, Maggie H. Kwan, Rick Huang, Peyman P. Aryanpur, Brian Bothner y John E. Johnson. "Structure and Function of a Genetically Engineered Mimic of a Nonenveloped Virus Entry Intermediate". Journal of Virology 84, n.º 9 (17 de febrero de 2010): 4737–46. http://dx.doi.org/10.1128/jvi.02670-09.
Texto completoKaneko, Takane, Kiyotaka Toshimori y Hiroshi Iida. "Subcellular localization of MS4A13 isoform 2 in mouse spermatozoa". Reproduction 154, n.º 6 (diciembre de 2017): 843–57. http://dx.doi.org/10.1530/rep-17-0477.
Texto completoStudzińska, Sylwia, Ewelina Zawadzka, Szymon Bocian y Michał Szumski. "Synthesis and application of stationary phase for DNA-affinity chromatographic analysis of unmodified and antisense oligonucleotide". Analytical and Bioanalytical Chemistry 413, n.º 20 (24 de junio de 2021): 5109–19. http://dx.doi.org/10.1007/s00216-021-03473-7.
Texto completoViard, Julia, Yann Loe-Mie, Rachel Daudin, Malik Khelfaoui, Christine Plancon, Anne Boland, Francisco Tejedor et al. "Chr21 protein–protein interactions: enrichment in proteins involved in intellectual disability, autism, and late-onset Alzheimer’s disease". Life Science Alliance 5, n.º 12 (1 de agosto de 2022): e202101205. http://dx.doi.org/10.26508/lsa.202101205.
Texto completoBahrami, Azadeh, Fatma Doğan, Deanpen Japrung y Tim Albrecht. "Solid-state nanopores for biosensing with submolecular resolution". Biochemical Society Transactions 40, n.º 4 (20 de julio de 2012): 624–28. http://dx.doi.org/10.1042/bst20120121.
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