Artículos de revistas sobre el tema "Genome supercoiling"
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El Houdaigui, Bilal, Raphaël Forquet, Thomas Hindré, Dominique Schneider, William Nasser, Sylvie Reverchon y Sam Meyer. "Bacterial genome architecture shapes global transcriptional regulation by DNA supercoiling". Nucleic Acids Research 47, n.º 11 (24 de abril de 2019): 5648–57. http://dx.doi.org/10.1093/nar/gkz300.
Texto completoValenti, Anna, Giuseppe Perugino, Mosè Rossi y Maria Ciaramella. "Positive supercoiling in thermophiles and mesophiles: of the good and evil". Biochemical Society Transactions 39, n.º 1 (19 de enero de 2011): 58–63. http://dx.doi.org/10.1042/bst0390058.
Texto completoGeng, Yuncong, Christopher Herrick Bohrer, Nicolás Yehya, Hunter Hendrix, Lior Shachaf, Jian Liu, Jie Xiao y Elijah Roberts. "A spatially resolved stochastic model reveals the role of supercoiling in transcription regulation". PLOS Computational Biology 18, n.º 9 (19 de septiembre de 2022): e1009788. http://dx.doi.org/10.1371/journal.pcbi.1009788.
Texto completoAhmed, Syed Moiz y Peter Dröge. "Chromatin Architectural Factors as Safeguards against Excessive Supercoiling during DNA Replication". International Journal of Molecular Sciences 21, n.º 12 (24 de junio de 2020): 4504. http://dx.doi.org/10.3390/ijms21124504.
Texto completoSalvador, Maria L., Uwe Klein y Lawrence Bogorad. "Endogenous Fluctuations of DNA Topology in the Chloroplast of Chlamydomonas reinhardtii". Molecular and Cellular Biology 18, n.º 12 (1 de diciembre de 1998): 7235–42. http://dx.doi.org/10.1128/mcb.18.12.7235.
Texto completoNeguembor, Maria Victoria, Laura Martin, Álvaro Castells-García, Pablo Aurelio Gómez-García, Chiara Vicario, Davide Carnevali, Jumana AlHaj Abed et al. "Transcription-mediated supercoiling regulates genome folding and loop formation". Molecular Cell 81, n.º 15 (agosto de 2021): 3065–81. http://dx.doi.org/10.1016/j.molcel.2021.06.009.
Texto completoGilbert, Nick. "Organisation and Function of DNA Supercoiling in the Human Genome". Biophysical Journal 114, n.º 3 (febrero de 2018): 13a. http://dx.doi.org/10.1016/j.bpj.2017.11.113.
Texto completoAlcorlo, Martín, Margarita Salas y José M. Hermoso. "In Vivo DNA Binding of Bacteriophage GA-1 Protein p6". Journal of Bacteriology 189, n.º 22 (14 de septiembre de 2007): 8024–33. http://dx.doi.org/10.1128/jb.01047-07.
Texto completoAdkins, Melissa W. y Jessica K. Tyler. "The Histone Chaperone Asf1p Mediates Global Chromatin Disassemblyin Vivo". Journal of Biological Chemistry 279, n.º 50 (26 de septiembre de 2004): 52069–74. http://dx.doi.org/10.1074/jbc.m406113200.
Texto completoBlot, Nicolas, Ramesh Mavathur, Marcel Geertz, Andrew Travers y Georgi Muskhelishvili. "Homeostatic regulation of supercoiling sensitivity coordinates transcription of the bacterial genome". EMBO reports 7, n.º 7 (16 de junio de 2006): 710–15. http://dx.doi.org/10.1038/sj.embor.7400729.
Texto completoIvanov, Ivan E., Addison V. Wright, Joshua C. Cofsky, Kevin D. Palacio Aris, Jennifer A. Doudna y Zev Bryant. "Cas9 interrogates DNA in discrete steps modulated by mismatches and supercoiling". Proceedings of the National Academy of Sciences 117, n.º 11 (2 de marzo de 2020): 5853–60. http://dx.doi.org/10.1073/pnas.1913445117.
Texto completoEl Houdaigui, Bilal y Sam Meyer. "TwisTranscripT: stochastic simulation of the transcription-supercoiling coupling". Bioinformatics 36, n.º 12 (31 de marzo de 2020): 3899–901. http://dx.doi.org/10.1093/bioinformatics/btaa221.
Texto completoLaghi, Luigi, Ann E. Randolph, Alberto Malesci y C. Richard Boland. "Constraints imposed by supercoiling on in vitro amplification of polyomavirus DNA". Journal of General Virology 85, n.º 11 (1 de noviembre de 2004): 3383–88. http://dx.doi.org/10.1099/vir.0.80039-0.
Texto completoMarinov, Georgi K., Alexandro E. Trevino, Tingting Xiang, Anshul Kundaje, Arthur R. Grossman y William J. Greenleaf. "Transcription-dependent domain-scale three-dimensional genome organization in the dinoflagellate Breviolum minutum". Nature Genetics 53, n.º 5 (29 de abril de 2021): 613–17. http://dx.doi.org/10.1038/s41588-021-00848-5.
Texto completoKantidze, Omar L. y Sergey V. Razin. "Weak interactions in higher-order chromatin organization". Nucleic Acids Research 48, n.º 9 (20 de abril de 2020): 4614–26. http://dx.doi.org/10.1093/nar/gkaa261.
Texto completoSt Germain, Commodore, Hongchang Zhao y Jacqueline H. Barlow. "Transcription-Replication Collisions—A Series of Unfortunate Events". Biomolecules 11, n.º 8 (21 de agosto de 2021): 1249. http://dx.doi.org/10.3390/biom11081249.
Texto completoFerrándiz, María-José, Pablo Hernández y Adela G. de la Campa. "Genome-wide proximity between RNA polymerase and DNA topoisomerase I supports transcription in Streptococcus pneumoniae". PLOS Genetics 17, n.º 4 (30 de abril de 2021): e1009542. http://dx.doi.org/10.1371/journal.pgen.1009542.
Texto completoRoss, Margery A. y Peter Setlow. "The Bacillus subtilis HBsu Protein Modifies the Effects of α/β-Type, Small Acid-Soluble Spore Proteins on DNA". Journal of Bacteriology 182, n.º 7 (1 de abril de 2000): 1942–48. http://dx.doi.org/10.1128/jb.182.7.1942-1948.2000.
Texto completoOram, Mark y Martin L. Pato. "Mu-Like Prophage Strong Gyrase Site Sequences: Analysis of Properties Required for Promoting Efficient Mu DNA Replication". Journal of Bacteriology 186, n.º 14 (15 de julio de 2004): 4575–84. http://dx.doi.org/10.1128/jb.186.14.4575-4584.2004.
Texto completoAubry, Alexandra, Xiao-Su Pan, L. Mark Fisher, Vincent Jarlier y Emmanuelle Cambau. "Mycobacterium tuberculosis DNA Gyrase: Interaction with Quinolones and Correlation with Antimycobacterial Drug Activity". Antimicrobial Agents and Chemotherapy 48, n.º 4 (abril de 2004): 1281–88. http://dx.doi.org/10.1128/aac.48.4.1281-1288.2004.
Texto completoCao, Nan, Kemin Tan, Xiaobing Zuo, Thirunavukkarasu Annamalai y Yuk-Ching Tse-Dinh. "Mechanistic insights from structure of Mycobacterium smegmatis topoisomerase I with ssDNA bound to both N- and C-terminal domains". Nucleic Acids Research 48, n.º 8 (30 de marzo de 2020): 4448–62. http://dx.doi.org/10.1093/nar/gkaa201.
Texto completoBhandari, Nirajan, Christine Rourke, Thomas Wilmoth, Alekya Bheemreddy, David Schulman, Dina Collins, Harold E. Smith, Andy Golden y Aimee Jaramillo-Lambert. "Identification of Suppressors of top-2 Embryonic Lethality in Caenorhabditis elegans". G3: Genes|Genomes|Genetics 10, n.º 4 (21 de febrero de 2020): 1183–91. http://dx.doi.org/10.1534/g3.119.400927.
Texto completovan Loenhout, M. T. J., M. V. de Grunt y C. Dekker. "Dynamics of DNA Supercoils". Science 338, n.º 6103 (13 de septiembre de 2012): 94–97. http://dx.doi.org/10.1126/science.1225810.
Texto completoDorman, Charles J. "Regulation of transcription by DNA supercoiling in Mycoplasma genitalium: global control in the smallest known self-replicating genome". Molecular Microbiology 81, n.º 2 (16 de junio de 2011): 302–4. http://dx.doi.org/10.1111/j.1365-2958.2011.07718.x.
Texto completoGonzalez-Huici, V. "Genome wide, supercoiling-dependent in vivo binding of a viral protein involved in DNA replication and transcriptional control". Nucleic Acids Research 32, n.º 8 (28 de abril de 2004): 2306–14. http://dx.doi.org/10.1093/nar/gkh565.
Texto completoMenger, Katja E., Alejandro Rodríguez-Luis, James Chapman y Thomas J. Nicholls. "Controlling the topology of mammalian mitochondrial DNA". Open Biology 11, n.º 9 (septiembre de 2021): 210168. http://dx.doi.org/10.1098/rsob.210168.
Texto completoHead, Nathan E. y Hongwei Yu. "Cross-Sectional Analysis of Clinical and Environmental Isolates of Pseudomonas aeruginosa: Biofilm Formation, Virulence, and Genome Diversity". Infection and Immunity 72, n.º 1 (enero de 2004): 133–44. http://dx.doi.org/10.1128/iai.72.1.133-144.2004.
Texto completoIshii, Satoshi, Tetsuya Murakami y Kazuo Shishido. "A pSC101-parsequence-mediated study on the intracellular state of supercoiling of the pBR322 genome inEscherichia coliDNA topoisomerase I deletion mutant". FEMS Microbiology Letters 93, n.º 2 (junio de 1992): 115–20. http://dx.doi.org/10.1111/j.1574-6968.1992.tb05076.x.
Texto completodel Val, Elsa, William Nasser, Hafid Abaibou y Sylvie Reverchon. "RecA and DNA recombination: a review of molecular mechanisms". Biochemical Society Transactions 47, n.º 5 (18 de octubre de 2019): 1511–31. http://dx.doi.org/10.1042/bst20190558.
Texto completoAldag, Pierre, Fabian Welzel, Leonhard Jakob, Andreas Schmidbauer, Marius Rutkauskas, Fergus Fettes, Dina Grohmann y Ralf Seidel. "Probing the stability of the SpCas9–DNA complex after cleavage". Nucleic Acids Research 49, n.º 21 (18 de noviembre de 2021): 12411–21. http://dx.doi.org/10.1093/nar/gkab1072.
Texto completoNam, Gi-Moon y Gaurav Arya. "Torsional behavior of chromatin is modulated by rotational phasing of nucleosomes". Nucleic Acids Research 42, n.º 15 (6 de agosto de 2014): 9691–99. http://dx.doi.org/10.1093/nar/gku694.
Texto completoEriksson, Peter R., Geetu Mendiratta, Neil B. McLaughlin, Tyra G. Wolfsberg, Leonardo Mariño-Ramírez, Tiffany A. Pompa, Mohendra Jainerin, David Landsman, Chang-Hui Shen y David J. Clark. "Global Regulation by the Yeast Spt10 Protein Is Mediated through Chromatin Structure and the Histone Upstream Activating Sequence Elements". Molecular and Cellular Biology 25, n.º 20 (15 de octubre de 2005): 9127–37. http://dx.doi.org/10.1128/mcb.25.20.9127-9137.2005.
Texto completoKrassovsky, Kristina, Rajarshi P. Ghosh y Barbara J. Meyer. "Genome-wide profiling reveals functional interplay of DNA sequence composition, transcriptional activity, and nucleosome positioning in driving DNA supercoiling and helix destabilization in C. elegans". Genome Research 31, n.º 7 (24 de junio de 2021): 1187–202. http://dx.doi.org/10.1101/gr.270082.120.
Texto completoBarsoum, J. y P. Berg. "Simian virus 40 minichromosomes contain torsionally strained DNA molecules". Molecular and Cellular Biology 5, n.º 11 (noviembre de 1985): 3048–57. http://dx.doi.org/10.1128/mcb.5.11.3048-3057.1985.
Texto completoBarsoum, J. y P. Berg. "Simian virus 40 minichromosomes contain torsionally strained DNA molecules." Molecular and Cellular Biology 5, n.º 11 (noviembre de 1985): 3048–57. http://dx.doi.org/10.1128/mcb.5.11.3048.
Texto completoBrochu, Julien, Émilie Vlachos-Breton, Dina Irsenco y Marc Drolet. "Characterization of a pathway of genomic instability induced by R-loops and its regulation by topoisomerases in E. coli". PLOS Genetics 19, n.º 5 (4 de mayo de 2023): e1010754. http://dx.doi.org/10.1371/journal.pgen.1010754.
Texto completoCorless, Samuel y Nick Gilbert. "Investigating DNA supercoiling in eukaryotic genomes". Briefings in Functional Genomics 16, n.º 6 (24 de abril de 2017): 379–89. http://dx.doi.org/10.1093/bfgp/elx007.
Texto completoThomas, Shelia, Francine Rezzoug y Donald Max Miller. "A Family Of G-Rich Genomic Sequences Iinteract Specifically With The Pu27 Silencer Element Of The c-Myc Promoter". Blood 122, n.º 21 (15 de noviembre de 2013): 1264. http://dx.doi.org/10.1182/blood.v122.21.1264.1264.
Texto completoHerzel, Hanspeter, Olaf Weiss y Edward N. Trifonov. "Sequence Periodicity in Complete Genomes of Archaea Suggests Positive Supercoiling". Journal of Biomolecular Structure and Dynamics 16, n.º 2 (octubre de 1998): 341–45. http://dx.doi.org/10.1080/07391102.1998.10508251.
Texto completoYan, Yan, Wenxuan Xu, Sandip Kumar, Alexander Zhang, Fenfei Leng, David Dunlap y Laura Finzi. "Negative DNA supercoiling makes protein-mediated looping deterministic and ergodic within the bacterial doubling time". Nucleic Acids Research 49, n.º 20 (1 de noviembre de 2021): 11550–59. http://dx.doi.org/10.1093/nar/gkab946.
Texto completoChampion, Keith y N. Patrick Higgins. "Growth Rate Toxicity Phenotypes and Homeostatic Supercoil Control Differentiate Escherichia coli from Salmonella enterica Serovar Typhimurium". Journal of Bacteriology 189, n.º 16 (30 de marzo de 2007): 5839–49. http://dx.doi.org/10.1128/jb.00083-07.
Texto completoJolivet-Gougeon, Anne, Sandrine David-Jobert, Zohreh Tamanai-Shacoori, Christian M�nard y Michel Cormier. "Osmotic Stress-Induced Genetic Rearrangements inEscherichia coli H10407 Detected by Randomly Amplified Polymorphic DNA Analysis". Applied and Environmental Microbiology 66, n.º 12 (1 de diciembre de 2000): 5484–87. http://dx.doi.org/10.1128/aem.66.12.5484-5487.2000.
Texto completoKravatskaya, G. I., Y. V. Kravatsky, V. R. Chechetkin y V. G. Tumanyan. "Coexistence of different base periodicities in prokaryotic genomes as related to DNA curvature, supercoiling, and transcription". Genomics 98, n.º 3 (septiembre de 2011): 223–31. http://dx.doi.org/10.1016/j.ygeno.2011.06.006.
Texto completoBowater, Richard P., Natália Bohálová y Václav Brázda. "Interaction of Proteins with Inverted Repeats and Cruciform Structures in Nucleic Acids". International Journal of Molecular Sciences 23, n.º 11 (31 de mayo de 2022): 6171. http://dx.doi.org/10.3390/ijms23116171.
Texto completoMrázek, Jan. "Comparative Analysis of Sequence Periodicity among Prokaryotic Genomes Points to Differences in Nucleoid Structure and a Relationship to Gene Expression". Journal of Bacteriology 192, n.º 14 (21 de mayo de 2010): 3763–72. http://dx.doi.org/10.1128/jb.00149-10.
Texto completoRastelli, Luca, Karen Robinson, Yanbo Xu y Sadhan Majumder. "Reconstitution of Enhancer Function in Paternal Pronuclei of One-Cell Mouse Embryos". Molecular and Cellular Biology 21, n.º 16 (15 de agosto de 2001): 5531–40. http://dx.doi.org/10.1128/mcb.21.16.5531-5540.2001.
Texto completoGrohens, Théotime, Sam Meyer y Guillaume Beslon. "A Genome-Wide Evolutionary Simulation of the Transcription-Supercoiling Coupling". Artificial Life, 5 de agosto de 2022, 1–18. http://dx.doi.org/10.1162/artl_a_00373.
Texto completoVisser, Bryan J., Sonum Sharma, Po J. Chen, Anna B. McMullin, Maia L. Bates y David Bates. "Psoralen mapping reveals a bacterial genome supercoiling landscape dominated by transcription". Nucleic Acids Research, 14 de abril de 2022. http://dx.doi.org/10.1093/nar/gkac244.
Texto completoGuo, Monica S., Ryo Kawamura, Megan L. Littlehale, John F. Marko y Michael T. Laub. "High-resolution, genome-wide mapping of positive supercoiling in chromosomes". eLife 10 (19 de julio de 2021). http://dx.doi.org/10.7554/elife.67236.
Texto completoFujita, Hironobu, Ayane Osaku, Yuto Sakane, Koki Yoshida, Kayoko Yamada, Seia Nara, Takahito Mukai y Masayuki Su’etsugu. "Enzymatic Supercoiling of Bacterial Chromosomes Facilitates Genome Manipulation". ACS Synthetic Biology, 23 de agosto de 2022. http://dx.doi.org/10.1021/acssynbio.2c00353.
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