Literatura académica sobre el tema "Evolution of the archaea"
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Artículos de revistas sobre el tema "Evolution of the archaea"
Kellner, Siri, Anja Spang, Pierre Offre, Gergely J. Szöllősi, Celine Petitjean y Tom A. Williams. "Genome size evolution in the Archaea". Emerging Topics in Life Sciences 2, n.º 4 (14 de noviembre de 2018): 595–605. http://dx.doi.org/10.1042/etls20180021.
Texto completoNgcobo, Phelelani Erick, Bridget Valeria Zinhle Nkosi, Wanping Chen, David R. Nelson y Khajamohiddin Syed. "Evolution of Cytochrome P450 Enzymes and Their Redox Partners in Archaea". International Journal of Molecular Sciences 24, n.º 4 (19 de febrero de 2023): 4161. http://dx.doi.org/10.3390/ijms24044161.
Texto completoRafiq, Muhammad, Noor Hassan, Maliha Rehman, Muhammad Hayat, Gullasht Nadeem, Farwa Hassan, Naveed Iqbal et al. "Challenges and Approaches of Culturing the Unculturable Archaea". Biology 12, n.º 12 (7 de diciembre de 2023): 1499. http://dx.doi.org/10.3390/biology12121499.
Texto completoGribaldo, Simonetta y Celine Brochier-Armanet. "The origin and evolution of Archaea: a state of the art". Philosophical Transactions of the Royal Society B: Biological Sciences 361, n.º 1470 (9 de mayo de 2006): 1007–22. http://dx.doi.org/10.1098/rstb.2006.1841.
Texto completoWilliams, Tom A., Gergely J. Szöllősi, Anja Spang, Peter G. Foster, Sarah E. Heaps, Bastien Boussau, Thijs J. G. Ettema y T. Martin Embley. "Integrative modeling of gene and genome evolution roots the archaeal tree of life". Proceedings of the National Academy of Sciences 114, n.º 23 (22 de mayo de 2017): E4602—E4611. http://dx.doi.org/10.1073/pnas.1618463114.
Texto completoForterre, Patrick. "The Common Ancestor of Archaea and Eukarya Was Not an Archaeon". Archaea 2013 (2013): 1–18. http://dx.doi.org/10.1155/2013/372396.
Texto completoVERHEES, Corné H., Servé W. M. KENGEN, Judith E. TUININGA, Gerrit J. SCHUT, Michael W. W. ADAMS, Willem M. de VOS y John van der OOST. "The unique features of glycolytic pathways in Archaea". Biochemical Journal 375, n.º 2 (15 de octubre de 2003): 231–46. http://dx.doi.org/10.1042/bj20021472.
Texto completoZhu, Pengfei, Jialin Hou, Yixuan Xiong, Ruize Xie, Yinzhao Wang y Fengping Wang. "Expanded Archaeal Genomes Shed New Light on the Evolution of Isoprenoid Biosynthesis". Microorganisms 12, n.º 4 (30 de marzo de 2024): 707. http://dx.doi.org/10.3390/microorganisms12040707.
Texto completoTamarit, Daniel, Eva F. Caceres, Mart Krupovic, Reindert Nijland, Laura Eme, Nicholas P. Robinson y Thijs J. G. Ettema. "A closed Candidatus Odinarchaeum chromosome exposes Asgard archaeal viruses". Nature Microbiology 7, n.º 7 (27 de junio de 2022): 948–52. http://dx.doi.org/10.1038/s41564-022-01122-y.
Texto completoFouqueau, Thomas, Fabian Blombach, Gwenny Cackett, Alice E. Carty, Dorota M. Matelska, Sapir Ofer, Simona Pilotto, Duy Khanh Phung y Finn Werner. "The cutting edge of archaeal transcription". Emerging Topics in Life Sciences 2, n.º 4 (14 de noviembre de 2018): 517–33. http://dx.doi.org/10.1042/etls20180014.
Texto completoTesis sobre el tema "Evolution of the archaea"
Cossu, Matteo. "Genomic evolution of archaea thermococcales". Thesis, Université Paris-Saclay (ComUE), 2017. http://www.theses.fr/2017SACLS028.
Texto completoThe main goal of my PhD project is to investigate the genomic evolution of the Archaea Thermococcales order. I am interested in understanding how mobile genetic elements (MGE) can influence the evolution of genomes. Using a multidisciplinary approach, we were able to explore the different aspects of this phenomenon in silico, in vitro and in vivo. Through in silico analyses of all available completely sequenced Thermococcales genomes, we showed that this order displays a characteristic high level of rearrangements potentially disrupting gene expression patterns. In a first approach, we investigated the existence of chromosomal organization. The inefficiency in predicting origin and termination of replication on the sole basis of chromosomal DNA composition or skew, motivated us to use a different approach based on biologically relevant sequences. We determined the position of the origin of replication (oriC) in all 21 sequenced Thermococcales genomes. The potential position of the termination was predicted in 19 genomes at or near the dif site, where chromosome dimers are resolved before DNA segregation. Computation of the core genome uncovered a number of essential gene clusters with a remarkably stable chromosomal position across species, using oriC as reference. On the other hand, core-free regions appear to correspond to putative integrated mobile elements. These observations indicate that a remarkable degree of “order” has been maintained across Thermococcales even if they display highly scrambled chromosomes, with inversions being especially frequent. The discovery and characterization of a new organism, Thermococcus nautili allowed us to better understand the underlying mechanism causing these inversions. The sequencing and in silico analysis of its genome strongly suggested the involvement of a new class of tyrosine recombinases in genomic plasticity. T. nautili pTN3 plasmid, which is found integrated into the chromosome and also self-replicating encodes an integrase belonging to this class. Similar plasmids have also been found integrated in the chromosome of other sequenced Thermococcales (e.g. TKV4 in T. kodakarensis). In order to test its enzymatic activity, we overproduced and purified the integrase encoded by pTN3. In vitro experiments first determined the minimal sequence segment required for integrase activity and optimized the enzymatic reaction in vitro. Due to this early results, we were able to demonstrate the excision/integration reaction observed with other tyrosine recombinases. Additionally, the in vivo excision of a related integrated element (TKV4 from T. kodakarensis) by the pTN3 integrase was performed during this study. The IntpTN3 gene has been cloned into an E. coli/Thermococcus shuttle vector for transformation and expression in T. kodakarensis. After incubation, cells showed the presence of the TKV4-integrated element in free circular form. Finally, we were able to mimic in vitro chromosomal inversion using synthetic substrates containing integration target sequences. We were also able to show that pTN3 integrase possesses an activity which can mediate large scale genomic inversions using different sites and therefore explain the rearrangements observed in Thermococcales)
Aouad, Monique. "Phylogenomic study of the evolutionary history of the Archaea and their link with eukaryogenesis". Thesis, Lyon, 2018. http://www.theses.fr/2018LYSE1246.
Texto completoThe burst of sequencing data has helped disentangling most of the phylogenetic relationships in Archaea. Nevertheless, many questions remain to be addressed both at the level of the archaeal domain and at the level of the three domains of life. Among them, the phylogenetic relationships inside the cluster II, in particular the position of extreme halophilic archaeal lineages relatively to the methanogens which have been placed at different positions in the tree based on the different markers and reconstruction models used, as well as the position of the root of the Archaea and the position of the eukaryotes in the light of the newly sequenced archaeal lineages. During my thesis, I have contributed to (i) refine the phylogeny of the archaeal domain by focusing on the phylogenetic relationships among the cluster II Archaea, in particular the positions of the extreme halophilic lineages through dedicated analyses focusing on this specific part of the archaeal tree, and (ii) establish a global phylogeny of the Archaea to understand their early evolutionary history and their link with the eukaryotes through a large-scale two-step phylogenomic analysis at the level of the three domains of life. First, using comparative genomics approaches on 155 complete genomes belonging to the Halobacteria, Nanohaloarchaea, methanogens class II, Archaeoglobales, and Diaforarchaea, I have identified 258 proteins carrying a reliable phylogenetic signal to investigate the position of the extreme halophilic lineages in Archaea. By combining different approaches limiting the impact of non-phylogenetic signal on phylogenetic inference (like the Slow Fast method and the recoding of amino acids), I showed that the Nanohaloarchaea branch with Methanocellales, and Halobacteria branch with Methanomicrobiales. This dataset has been subsequently used to investigate the position of a third extreme halophilic lineage, the Methanonatronarchaeia, which I showed to branch in between the Archaeoglobales and Diaforarchaea. These results suggest that adaption to high salinity emerged at least three times independently in Archaea, and that the phenotypic similarities observed in Nanohaloarchaea, Halobacteria, and Methanonatronarchaeia likely result from convergent evolution, possibly accompanied by horizontal gene transfers. Finally, these results suggest that the basal grouping of Nanohaloarchaea with other DPANN lineages is likely the consequence of a tree reconstruction artefact. For the second part of my thesis, I have applied a strategy consisting in separately analyzing the three domains of life two by two, by updating 72 protein families previously identified by Raymann and colleagues (2015) to include all novel archaeal lineages that were sequenced since the publication of this study like the Asgard, the DPANN, the Stygia, the Acherontia, etc. In total, my taxonomic sampling includes 435 archaea, 18 eukaryotes, and 67 bacteria. The results of the Slow-Fast method supported a root of the Archaea lying between a basal DPANN superphylum and the rest of the Archaea separated into two monophyletic groups: the cluster I and cluster II as described by Raymann and colleagues (2015), and showed that the monophyly of the Euryarchaeota is supported only by the fast-evolving sites. My results also placed the eukaryotes as the sister group to the TACK superphylum and showed that their sister grouping with the Asgard is linked to the fast-evolving sites. These results have major implications on the inferences of the nature of the last common archaeal ancestor and the subsequent evolutionary history of this domain that led to the rise of the first eukaryotic cell
Berthon, Jonathan. "Etude de la réplication de l'ADN chez les Archaea". Phd thesis, Université Paris Sud - Paris XI, 2008. http://tel.archives-ouvertes.fr/tel-00344124.
Texto completoPremièrement, j'ai essayé de purifier la protéine initiatrice de la réplication Cdc6/Orc1, sous une forme native, dans l'espoir de mettre au point le premier système de réplication de l'ADN in vitro chez les Archaea. Malheureusement, cette approche a été infructueuse en raison de l'instabilité et des propriétés d'agrégation de la protéine.
Deuxièmement, j'ai réalisé une analyse comparative du contexte génomique des gènes de réplication dans les génomes d'Archaea. Cette analyse nous a permis d'identifier une association très conservée entre des gènes de la réplication et des gènes liés au ribosome. Cette organisation suggère l'existence d'un mécanisme de couplage entre la réplication de l'ADN et la traduction. De manière remarquable, des données expérimentales obtenues chez des modèles bactériens et eucaryotes appuient cette idée. J'ai ensuite mis au point des outils expérimentaux qui permettront d'éprouver la pertinence biologique de certaines des prédictions effectuées.
Finalement, j'ai examiné la distribution taxonomique des gènes de la réplication dans les génomes d'Archaea afin de prédire la composition probable de la machinerie de réplication de l'ADN chez le dernier ancêtre commun des Archaea. Dans leur ensemble, les profils phylétiques des gènes de la réplication suggèrent que la machinerie ancestrale était plus complexe que celle des organismes archéens contemporains.
Petitjean, Celine. "Phylogénie et évolution des Archaea, une approche phylogénomique". Phd thesis, Université Paris Sud - Paris XI, 2013. http://tel.archives-ouvertes.fr/tel-01070633.
Texto completoHepp, Benjamin. "Characterization of IntpTN3 : A suicidal integrase capable of in vitro homologous recombination". Electronic Thesis or Diss., université Paris-Saclay, 2023. http://www.theses.fr/2023UPASL151.
Texto completoHyperthermophilic organisms are microorganisms that thrive optimally at temperatures of 85°C or higher. They are commonly found in extreme environments such as hot springs, oil wells, and oceanic trenches near hydrothermal vents, such as black smokers. These organisms have emerged as valuable resources for biotechnological applications due to their production of thermostable enzymes, including polymerases used in PCR (Polymerase Chain Reaction) and enzymes employed in the detergent industry for breaking down biomolecules at high temperatures. Within the hyperthermophilic archaea Thermococcus nautili, we have discovered an enzyme capable of catalyzing DNA recombination with virtually any DNA molecule. This enzyme holds immense potential as a robust biotechnological tool for researchers, enabling the in vitro assembly of DNA molecules and facilitating DNA modification processes. These promising findings have led us to file an invention disclosure statement for our enzyme, recognizing its significant value in advancing molecular biology and genetic engineering
Li, Jun y 李俊. "Molecular evolution and phylogeny of methanogenic archael genomes". Thesis, The University of Hong Kong (Pokfulam, Hong Kong), 2014. http://hdl.handle.net/10722/208152.
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Biological Sciences
Doctoral
Doctor of Philosophy
Archibald, John M. "Studies on the evolution of archaeal and eukaryotic chaperonins". Thesis, National Library of Canada = Bibliothèque nationale du Canada, 2001. http://www.collectionscanada.ca/obj/s4/f2/dsk3/ftp05/NQ66656.pdf.
Texto completoRobertson, S. "Late Archaean crustal evolution in the Ivisartoq region, southern west Greenland". Thesis, University of Exeter, 1985. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.353048.
Texto completoDougherty-Page, Jon Stanley. "The evolution of the Archaean continental crust of Northern Zimbabwe". Thesis, Open University, 1994. http://oro.open.ac.uk/54877/.
Texto completoTicak, Tomislav. "Anoxic quaternary amine utilization by archaea and bacteria through a non-L-pyrrolysine methyltransferase; insights into global ecology, human health, and evolution of anaerobic systems". Miami University / OhioLINK, 2015. http://rave.ohiolink.edu/etdc/view?acc_num=miami1429897518.
Texto completoLibros sobre el tema "Evolution of the archaea"
1943-, Garrett Roger A. y Klenk Hans-Peter, eds. Archaea: Evolution, physiology, and molecular biology. Malden, MA: Blackwell Pub., 2007.
Buscar texto completoKurup, Ravikumar y Parameswaran Achutha Kurup. The third element: Actinidic archaea, digoxin, and the biological universe. Hauppauge, N.Y: Nova Science Publishers, 2011.
Buscar texto completoC, Condie Kent, ed. Archean crustal evolution. Amsterdam: Elsevier, 1994.
Buscar texto completoD, Ayres L., ed. Evolution of Archean supracrustal sequences. [St. John, Nfld.]: Geological Association of Canada, 1985.
Buscar texto completoDilek, Yildirim y Harald Furnes, eds. Evolution of Archean Crust and Early Life. Dordrecht: Springer Netherlands, 2014. http://dx.doi.org/10.1007/978-94-007-7615-9.
Texto completoHickman, Arthur H. Archean Evolution of the Pilbara Craton and Fortescue Basin. Cham: Springer International Publishing, 2023. http://dx.doi.org/10.1007/978-3-031-18007-1.
Texto completoCavicchioli, Ricardo, ed. Archaea. Washington, DC, USA: ASM Press, 2007. http://dx.doi.org/10.1128/9781555815516.
Texto completoFerreira-Cerca, Sébastien, ed. Archaea. New York, NY: Springer US, 2022. http://dx.doi.org/10.1007/978-1-0716-2445-6.
Texto completoGarrett, Roger A. y Hans-Peter Klenk, eds. Archaea. Malden, MA, USA: Blackwell Publishing Ltd, 2006. http://dx.doi.org/10.1002/9780470750865.
Texto completoMargulis, Lynn. Symbiosis in cell evolution: Microbial communities in the Archean and Proterozoic eons. 2a ed. New York: Freeman, 1993.
Buscar texto completoCapítulos de libros sobre el tema "Evolution of the archaea"
Boucher, Yan. "Lipids: Biosynthesis, Function, and Evolution". En Archaea, 341–53. Washington, DC, USA: ASM Press, 2014. http://dx.doi.org/10.1128/9781555815516.ch15.
Texto completoForterre, Patrick, Yvan Zivanovic y Simonetta Gribaldo. "Structure and Evolution of Genomes". En Archaea, 411–33. Washington, DC, USA: ASM Press, 2014. http://dx.doi.org/10.1128/9781555815516.ch19.
Texto completoWoese, Carl R. "The Archaea: an Invitation to Evolution†". En Archaea, 1–13. Washington, DC, USA: ASM Press, 2014. http://dx.doi.org/10.1128/9781555815516.ch1.
Texto completoGrogan, Dennis W. "Mechanisms of Genome Stability and Evolution†". En Archaea, 120–38. Washington, DC, USA: ASM Press, 2014. http://dx.doi.org/10.1128/9781555815516.ch5.
Texto completoGil, Rosario, Amparo Latorre y Andrés Moya. "Evolution of Prokaryote-Animal Endosymbiosis from a Genomics Perspective". En (Endo)symbiotic Methanogenic Archaea, 223–55. Cham: Springer International Publishing, 2018. http://dx.doi.org/10.1007/978-3-319-98836-8_11.
Texto completoGil, Rosario, Amparo Latorre y Andrés Moya. "Evolution of Prokaryote-Animal Symbiosis from a Genomics Perspective". En (Endo)symbiotic Methanogenic Archaea, 207–33. Berlin, Heidelberg: Springer Berlin Heidelberg, 2010. http://dx.doi.org/10.1007/978-3-642-13615-3_11.
Texto completoSpradlin, Savannah, Lori Cobani, Christian Brininger y Caryn Evilia. "Archaea Were Trailblazers in Signaling Evolution: Protein Adaptation and Structural Fluidity as a Form of Intracellular Communication". En Biocommunication of Archaea, 195–211. Cham: Springer International Publishing, 2017. http://dx.doi.org/10.1007/978-3-319-65536-9_12.
Texto completoFrye, Roy A. "Evolution of Sirtuins From Archaea to Vertebrates". En Histone Deacetylases, 183–202. Totowa, NJ: Humana Press, 2006. http://dx.doi.org/10.1385/1-59745-024-3:183.
Texto completoBertrand, Jean-Claude, Pierre Caumette, Philippe Normand, Bernard Ollivier y Télesphore Sime-Ngando. "Prokaryote/Eukaryote Dichotomy and Bacteria/Archaea/Eukarya Domains: Two Inseparable Concepts". En Prokaryotes and Evolution, 1–21. Cham: Springer International Publishing, 2018. http://dx.doi.org/10.1007/978-3-319-99784-1_1.
Texto completoTripp, Vanessa y Lennart Randau. "Evolution of C/D Box sRNAs". En RNA Metabolism and Gene Expression in Archaea, 201–24. Cham: Springer International Publishing, 2017. http://dx.doi.org/10.1007/978-3-319-65795-0_9.
Texto completoActas de conferencias sobre el tema "Evolution of the archaea"
Pikuta, Elena V., Dragana Tankosic y Rob Sheldon. "Evolution of Archaea in 3D modeling". En SPIE Optical Engineering + Applications, editado por Richard B. Hoover, Gilbert V. Levin y Alexei Y. Rozanov. SPIE, 2012. http://dx.doi.org/10.1117/12.929945.
Texto completoJain, Prem. "Architecture evolution and evaluation (ArchEE) capability". En 2011 6th International Conference on System of Systems Engineering (SoSE). IEEE, 2011. http://dx.doi.org/10.1109/sysose.2011.5966581.
Texto completoRaju, Perumala y Rajat Mazumder. "THE GEOLOGICAL EVOLUTION OF THE ARCHEAN DHARWAR-CRATON". En GSA Connects 2021 in Portland, Oregon. Geological Society of America, 2021. http://dx.doi.org/10.1130/abs/2021am-364281.
Texto completoZhao, S., L. Zhou, X. Sun, Z. Gao, Y. Zhou, N. Wang, Y. Wang, J. Chen, L. Xing y R. Bao. "Temperature Controls on Dynamics and Evolution of Archaeal Lipid Distribution". En IMOG 2023. European Association of Geoscientists & Engineers, 2023. http://dx.doi.org/10.3997/2214-4609.202333092.
Texto completoDurgalakshmi, Durgalakshmi, Ian Williams y Sajeev Krishnan. "Petrogenesis and evolution of charnockites formed at the Archaean-Proterozoic boundary". En Goldschmidt2022. France: European Association of Geochemistry, 2022. http://dx.doi.org/10.46427/gold2022.9850.
Texto completoBrown, Michael, Christopher L. Kirkland, Tim E. Johnson y Phil Sutton. "GIANT IMPACTS AND THE ORIGIN AND EVOLUTION OF ARCHEAN CRATONS". En GSA Connects 2023 Meeting in Pittsburgh, Pennsylvania. Geological Society of America, 2023. http://dx.doi.org/10.1130/abs/2023am-391877.
Texto completoBrown, Michael, Christopher Kirkland, Tim Johnson y Phil Sutton. "Giant impacts and the origin and evolution of Archean cratons". En Goldschmidt2023. France: European Association of Geochemistry, 2023. http://dx.doi.org/10.7185/gold2023.16192.
Texto completoGillespie, Jack, Pete Kinny, Chris Kirkland, Laure Martin, Alexander Nemchin, Aaron J. Cavosie y Derrick Hasterok. "Isotopic modelling of Archean crustal evolution from comagmatic zircon--apatite pairs". En Goldschmidt2021. France: European Association of Geochemistry, 2021. http://dx.doi.org/10.7185/gold2021.5488.
Texto completoFenu, Luigi y Giuseppe C. Marano. "Steel Truss-Type Arches Optimization Under Multi-Load Cases". En IABSE Congress, New York, New York 2019: The Evolving Metropolis. Zurich, Switzerland: International Association for Bridge and Structural Engineering (IABSE), 2019. http://dx.doi.org/10.2749/newyork.2019.1338.
Texto completoMenon, Swathi Sivakumar y Vinod Balakrishnan. "Language Evolution: An NCT and Conlang Framework". En GLOCAL Conference on Asian Linguistic Anthropology 2022. The GLOCAL Unit, SOAS University of London, 2023. http://dx.doi.org/10.47298/cala2022.7-4.
Texto completoInformes sobre el tema "Evolution of the archaea"
Skulski, T., J. A. Percival y R. A. Stern. Archean crustal evolution in the central Minto block, northern Quebec. Natural Resources Canada/ESS/Scientific and Technical Publishing Services, 1996. http://dx.doi.org/10.4095/207760.
Texto completoLucas, S. B. y M. R. St-Onge. Evolution of Archean and Early Proterozoic Magmatic Arcs in northeastern Ungava Peninsula, Quebec. Natural Resources Canada/ESS/Scientific and Technical Publishing Services, 1991. http://dx.doi.org/10.4095/132566.
Texto completoGregersen, U., P. C. Knutz, G. K. Pedersen, H. Nøhr-Hansen, J. R. Ineson, L. M. Larsen, J R Hopper et al. Stratigraphy of the West Greenland Margin. Natural Resources Canada/CMSS/Information Management, 2022. http://dx.doi.org/10.4095/321849.
Texto completoTrent, J. D., H. K. Kagawa y N. J. Zaluzec. Chaperonin polymers in archaea: The cytoskeleton of prokaryotes? Office of Scientific and Technical Information (OSTI), julio de 1997. http://dx.doi.org/10.2172/505321.
Texto completoKelly, R. M. Bioenergetic and physiological studies of hyperthermophilic archaea. Final report. Office of Scientific and Technical Information (OSTI), marzo de 1999. http://dx.doi.org/10.2172/325744.
Texto completoDavis, W. J., J. J. Ryan, H. A. Sandeman y S. Tella. A Paleoproterozoic detrital zircon age for a key conglomeratic horizon within the Rankin Inlet area, Kivalliq Region, Nunavut: implications for Archean and Proterozoic evolution of the area. Natural Resources Canada/ESS/Scientific and Technical Publishing Services, 2008. http://dx.doi.org/10.4095/225479.
Texto completoSchuster, Gadi y David Stern. Integration of phosphorus and chloroplast mRNA metabolism through regulated ribonucleases. United States Department of Agriculture, agosto de 2008. http://dx.doi.org/10.32747/2008.7695859.bard.
Texto completoLuthey-Schulten, Zaida. Computational Modeling of Fluctuations in Energy and Metabolic Pathways of Methanogenic Archaea. Office of Scientific and Technical Information (OSTI), enero de 2017. http://dx.doi.org/10.2172/1337955.
Texto completoEichler, Jerry. Protein Glycosylation in Archaea: A Post-Translational Modification to Enhance Extremophilic Protein Stability. Fort Belvoir, VA: Defense Technical Information Center, enero de 2010. http://dx.doi.org/10.21236/ada515568.
Texto completoMartin, Maurice. Grid Evolution and Attack Evolution. Office of Scientific and Technical Information (OSTI), abril de 2018. http://dx.doi.org/10.2172/1434234.
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