Artículos de revistas sobre el tema "Conformational clustering"
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Roither, Bernhard, Chris Oostenbrink, Georg Pfeiler, Heinz Koelbl y Wolfgang Schreiner. "Pembrolizumab Induces an Unexpected Conformational Change in the CC′-loop of PD-1". Cancers 13, n.º 1 (22 de diciembre de 2020): 5. http://dx.doi.org/10.3390/cancers13010005.
Texto completoConklin, D., S. Fortier, J. I. Glasgow y F. H. Allen. "Conformational analysis from crystallographic data using conceptual clustering". Acta Crystallographica Section B Structural Science 52, n.º 3 (1 de junio de 1996): 535–49. http://dx.doi.org/10.1107/s010876819501696x.
Texto completoCollins, A., A. Parkin, G. Barr, W. Dong, C. J. Gilmore y C. C. Wilson. "Configurational and conformational classification of pyranose sugars". Acta Crystallographica Section B Structural Science 64, n.º 1 (17 de enero de 2008): 57–65. http://dx.doi.org/10.1107/s0108768107067341.
Texto completoHuang, Shupei, Haizhong An, Xiangyun Gao, Xiaoqing Hao y Xuan Huang. "The Multiscale Conformation Evolution of the Financial Time Series". Mathematical Problems in Engineering 2015 (2015): 1–9. http://dx.doi.org/10.1155/2015/563145.
Texto completoJoshi, Arpita, Nurit Haspel y Eduardo González. "Characterizing Protein Conformational Spaces using Efficient Data Reduction and Algebraic Topology". Journal of Human, Earth, and Future 3 (31 de mayo de 2022): 1–21. http://dx.doi.org/10.28991/hef-sp2022-01-01.
Texto completoPérez, J., K. Nolsøe, M. Kessler, L. García, E. Pérez y J. L. Serrano. "Bayesian methods for the conformational classification of eight-membered rings". Acta Crystallographica Section B Structural Science 61, n.º 5 (23 de septiembre de 2005): 585–94. http://dx.doi.org/10.1107/s0108768105023931.
Texto completoDobrovolska, Olena, Øyvind Strømland, Ørjan Sele Handegård, Martin Jakubec, Morten L. Govasli, Åge Aleksander Skjevik, Nils Åge Frøystein, Knut Teigen y Øyvind Halskau. "Investigating the Disordered and Membrane-Active Peptide A-Cage-C Using Conformational Ensembles". Molecules 26, n.º 12 (12 de junio de 2021): 3607. http://dx.doi.org/10.3390/molecules26123607.
Texto completoModi, Vivek y Roland L. Dunbrack. "Defining a new nomenclature for the structures of active and inactive kinases". Proceedings of the National Academy of Sciences 116, n.º 14 (13 de marzo de 2019): 6818–27. http://dx.doi.org/10.1073/pnas.1814279116.
Texto completoHumphries, M. J. "Monoclonal antibodies as probes of integrin priming and activation". Biochemical Society Transactions 32, n.º 3 (1 de junio de 2004): 407–11. http://dx.doi.org/10.1042/bst0320407.
Texto completoKessler, Mathieu, María C. Bueso y José Pérez. "Model-based conformational clustering of ring molecules". Journal of Chemometrics 21, n.º 1-2 (enero de 2007): 53–64. http://dx.doi.org/10.1002/cem.1035.
Texto completoBianchi, Greta, Marco Mangiagalli, Alberto Barbiroli, Sonia Longhi, Rita Grandori, Carlo Santambrogio y Stefania Brocca. "Distribution of Charged Residues Affects the Average Size and Shape of Intrinsically Disordered Proteins". Biomolecules 12, n.º 4 (9 de abril de 2022): 561. http://dx.doi.org/10.3390/biom12040561.
Texto completoWEN, BIN, YUNYU SHI y ZHIYONG ZHANG. "CLUSTERING MULTI-DOMAIN PROTEIN STRUCTURES IN THE ESSENTIAL DYNAMICS SUBSPACE". Journal of Theoretical and Computational Chemistry 12, n.º 08 (diciembre de 2013): 1341008. http://dx.doi.org/10.1142/s0219633613410083.
Texto completoDluhy, R. A., D. Moffatt, D. G. Cameron, R. Mendelsohn y H. H. Mantsch. "Characterization of cooperative conformational transitions by Fourier transform infrared spectroscopy: application to phospholipid binary mixtures". Canadian Journal of Chemistry 63, n.º 7 (1 de julio de 1985): 1925–32. http://dx.doi.org/10.1139/v85-319.
Texto completoMana, Giulia, Donatella Valdembri, Janet A. Askari, Zhenhai Li, Patrick Caswell, Cheng Zhu, Martin J. Humphries, Christoph Ballestrem y Guido Serini. "The βI domain promotes active β1 integrin clustering into mature adhesion sites". Life Science Alliance 6, n.º 2 (21 de noviembre de 2022): e202201388. http://dx.doi.org/10.26508/lsa.202201388.
Texto completoModi, Vivek y Roland L. Dunbrack. "Kincore: a web resource for structural classification of protein kinases and their inhibitors". Nucleic Acids Research 50, n.º D1 (13 de octubre de 2021): D654—D664. http://dx.doi.org/10.1093/nar/gkab920.
Texto completoKim, Irene S., Simon Jenni, Megan L. Stanifer, Eatai Roth, Sean P. J. Whelan, Antoine M. van Oijen y Stephen C. Harrison. "Mechanism of membrane fusion induced by vesicular stomatitis virus G protein". Proceedings of the National Academy of Sciences 114, n.º 1 (14 de diciembre de 2016): E28—E36. http://dx.doi.org/10.1073/pnas.1618883114.
Texto completoDAMJANOVICH, S., R. GÁSPÁR, Jr. y C. PIERI. "Dynamic receptor superstructures at the plasma membrane". Quarterly Reviews of Biophysics 30, n.º 1 (febrero de 1997): 67–106. http://dx.doi.org/10.1017/s0033583596003307.
Texto completoZok, Tomasz, Maciej Antczak, Martin Riedel, David Nebel, Thomas Villmann, Piotr Lukasiak, Jacek Blazewicz y Marta Szachniuk. "Building the library of RNA 3D nucleotide conformations using the clustering approach". International Journal of Applied Mathematics and Computer Science 25, n.º 3 (1 de septiembre de 2015): 689–700. http://dx.doi.org/10.1515/amcs-2015-0050.
Texto completoSteuer, Jakob, Oleksandra Kukharenko, Kai Riedmiller, Jörg S. Hartig y Christine Peter. "Guanidine-II aptamer conformations and ligand binding modes through the lens of molecular simulation". Nucleic Acids Research 49, n.º 14 (7 de julio de 2021): 7954–65. http://dx.doi.org/10.1093/nar/gkab592.
Texto completoPolêto, Marcelo D., Bruno I. Grisci, Marcio Dorn y Hugo Verli. "ConfID: an analytical method for conformational characterization of small molecules using molecular dynamics trajectories". Bioinformatics 36, n.º 11 (27 de febrero de 2020): 3576–77. http://dx.doi.org/10.1093/bioinformatics/btaa130.
Texto completoAdasme-Carreño, Francisco, Camila Muñoz-Gutierrez, Julio Caballero y Jans H. Alzate-Morales. "Performance of the MM/GBSA scoring using a binding site hydrogen bond network-based frame selection: the protein kinase case". Phys. Chem. Chem. Phys. 16, n.º 27 (2014): 14047–58. http://dx.doi.org/10.1039/c4cp01378f.
Texto completoKobayashi, Masamichi y Takehito Kozasa. "Conformational Ordering Process on Physical Gelation of Syndiotactic Polystyrene/Solvent Systems Revealed by Time-Resolved Infrared Spectroscopy". Applied Spectroscopy 47, n.º 9 (septiembre de 1993): 1417–24. http://dx.doi.org/10.1366/0003702934067450.
Texto completoHato, Takaaki, Nisar Pampori y Sanford J. Shattil. "Complementary Roles for Receptor Clustering and Conformational Change in the Adhesive and Signaling Functions of Integrin αIIbβ3". Journal of Cell Biology 141, n.º 7 (29 de junio de 1998): 1685–95. http://dx.doi.org/10.1083/jcb.141.7.1685.
Texto completoCollins, Anna, Gordon Barr, Wei Dong, Christopher J. Gilmore, Derek S. Middlemiss, Andrew Parkin y Chick C. Wilson. "The application of cluster analysis to identify conformational preferences in enones and enimines from crystal structural data". Acta Crystallographica Section B Structural Science 63, n.º 3 (16 de mayo de 2007): 469–76. http://dx.doi.org/10.1107/s0108768107006969.
Texto completoKim, Minsoo, Christopher V. Carman, Wei Yang, Azucena Salas y Timothy A. Springer. "The primacy of affinity over clustering in regulation of adhesiveness of the integrin αLβ2". Journal of Cell Biology 167, n.º 6 (20 de diciembre de 2004): 1241–53. http://dx.doi.org/10.1083/jcb.200404160.
Texto completoRaithby, P. R., G. P. Shields y F. H. Allen. "Conformational Analysis of Macrocyclic Ether Ligands. I. 1,4,7,10-Tetraoxacyclododecane and 1,4,7,10-Tetrathiacyclododecane". Acta Crystallographica Section B Structural Science 53, n.º 2 (1 de abril de 1997): 241–51. http://dx.doi.org/10.1107/s0108768196013663.
Texto completoTedeschi, Giulia, Edoardo Salladini, Carlo Santambrogio, Rita Grandori, Sonia Longhi y Stefania Brocca. "Conformational response to charge clustering in synthetic intrinsically disordered proteins". Biochimica et Biophysica Acta (BBA) - General Subjects 1862, n.º 10 (octubre de 2018): 2204–14. http://dx.doi.org/10.1016/j.bbagen.2018.07.011.
Texto completoBoutonnet, Nathalie S., Marianne J. Rooman y Shoshana J. Wodak. "Automatic Analysis of Protein Conformational Changes by Multiple Linkage Clustering". Journal of Molecular Biology 253, n.º 4 (noviembre de 1995): 633–47. http://dx.doi.org/10.1006/jmbi.1995.0578.
Texto completoComrie, William A., Alexander Babich y Janis K. Burkhardt. "F-actin flow drives affinity maturation and spatial organization of LFA-1 at the immunological synapse". Journal of Cell Biology 208, n.º 4 (9 de febrero de 2015): 475–91. http://dx.doi.org/10.1083/jcb.201406121.
Texto completoFolkertsma, Simon, Paula I. van Noort, Arnold de Heer, Peter Carati, Ralph Brandt, Arie Visser, Gerrit Vriend y Jacob de Vlieg. "The Use of in Vitro Peptide Binding Profiles and in Silico Ligand-Receptor Interaction Profiles to Describe Ligand-Induced Conformations of the Retinoid X Receptor α Ligand-Binding Domain". Molecular Endocrinology 21, n.º 1 (1 de enero de 2007): 30–48. http://dx.doi.org/10.1210/me.2006-0072.
Texto completoNikoloudis, Dimitris, Jim E. Pitts y José W. Saldanha. "A complete, multi-level conformational clustering of antibody complementarity-determining regions". PeerJ 2 (1 de julio de 2014): e456. http://dx.doi.org/10.7717/peerj.456.
Texto completoMarinova, Veselina, Laurence Dodd, Song-Jun Lee, Geoffrey P. F. Wood, Ivan Marziano y Matteo Salvalaglio. "Identifying Conformational Isomers of Organic Molecules in Solution via Unsupervised Clustering". Journal of Chemical Information and Modeling 61, n.º 5 (29 de abril de 2021): 2263–73. http://dx.doi.org/10.1021/acs.jcim.0c01387.
Texto completoSittel, Florian y Gerhard Stock. "Robust Density-Based Clustering To Identify Metastable Conformational States of Proteins". Journal of Chemical Theory and Computation 12, n.º 5 (21 de abril de 2016): 2426–35. http://dx.doi.org/10.1021/acs.jctc.5b01233.
Texto completoKlyshko, Eugene y Sarah Rauscher. "Defining Conformational States of Proteins using Dimensionality Reduction and Clustering Algorithms". Biophysical Journal 116, n.º 3 (febrero de 2019): 290a. http://dx.doi.org/10.1016/j.bpj.2018.11.1564.
Texto completoSolihah, Binti, Aina Musdholifah y Azhari Azhari. "A Novel Epitope Dataset: Performance of the MCL-Based Algorithms to Generate Dataset for Graph Learning Model". Engineering Innovations 4 (15 de febrero de 2023): 37–46. http://dx.doi.org/10.4028/p-8a27xd.
Texto completoTu, Sidong, Chandan K. Choudhury, Michaela Giltner, Igor Luzinov y Olga Kuksenok. "Mesoscale Modeling of Agglomeration of Molecular Bottlebrushes: Focus on Conformations and Clustering Criteria". Polymers 14, n.º 12 (9 de junio de 2022): 2339. http://dx.doi.org/10.3390/polym14122339.
Texto completoJiang, Hangjin y Xiaodan Fan. "The Two-Step Clustering Approach for Metastable States Learning". International Journal of Molecular Sciences 22, n.º 12 (19 de junio de 2021): 6576. http://dx.doi.org/10.3390/ijms22126576.
Texto completoHuang, Zhaohong, Xinyue Cui, Yuhao Xia, Kailong Zhao y Guijun Zhang. "Pathfinder: Protein folding pathway prediction based on conformational sampling". PLOS Computational Biology 19, n.º 9 (11 de septiembre de 2023): e1011438. http://dx.doi.org/10.1371/journal.pcbi.1011438.
Texto completoDas, Swagata, Supriya Das, Anupam Roy, Uttam Pal y Nakul C. Maiti. "Orientation of tyrosine side chain in neurotoxic Aβ differs in two different secondary structures of the peptide". Royal Society Open Science 3, n.º 10 (octubre de 2016): 160112. http://dx.doi.org/10.1098/rsos.160112.
Texto completoKolloff, Christopher, Adam Mazur, Jan K. Marzinek, Peter J. Bond, Simon Olsson y Sebastian Hiller. "Motional clustering in supra-τc conformational exchange influences NOE cross-relaxation rate". Journal of Magnetic Resonance 338 (mayo de 2022): 107196. http://dx.doi.org/10.1016/j.jmr.2022.107196.
Texto completoAllen, F. H. y S. Fortier. "Stereochemical and conformational classification of the hexopyranose sugars using numerical clustering methods". Acta Crystallographica Section B Structural Science 49, n.º 6 (1 de diciembre de 1993): 1021–31. http://dx.doi.org/10.1107/s0108768193008353.
Texto completoBouchoux, Guy, Sylvie Jezequel y Florence Penaud-Berruyer. "Conformational effect on gas-phase protonation and NH4+ clustering of 1,2-diols". Organic Mass Spectrometry 28, n.º 4 (abril de 1993): 421–27. http://dx.doi.org/10.1002/oms.1210280426.
Texto completoAsses, Yasmine, Vishwesh Venkatraman, Vincent Leroux, David W. Ritchie y Bernard Maigret. "Exploring c-Met kinase flexibility by sampling and clustering its conformational space". Proteins: Structure, Function, and Bioinformatics 80, n.º 4 (24 de enero de 2012): 1227–38. http://dx.doi.org/10.1002/prot.24021.
Texto completoZuffo, Michela, Aurélie Gandolfini, Brahim Heddi y Anton Granzhan. "Harnessing intrinsic fluorescence for typing of secondary structures of DNA". Nucleic Acids Research 48, n.º 11 (20 de abril de 2020): e61-e61. http://dx.doi.org/10.1093/nar/gkaa257.
Texto completoAllen, F. H. y R. Taylor. "Automated conformational analysis from crystallographic data. 5. Recognition of special positions in conformational space in symmetry-modified clustering algorithms". Acta Crystallographica Section B Structural Science 47, n.º 3 (1 de junio de 1991): 404–12. http://dx.doi.org/10.1107/s0108768190014094.
Texto completoBonilla, Steve L., Sarah K. Denny, John H. Shin, Aurora Alvarez-Buylla, William J. Greenleaf y Daniel Herschlag. "High-throughput dissection of the thermodynamic and conformational properties of a ubiquitous class of RNA tertiary contact motifs". Proceedings of the National Academy of Sciences 118, n.º 33 (9 de agosto de 2021): e2109085118. http://dx.doi.org/10.1073/pnas.2109085118.
Texto completovan der Wal, Dianne, Sandra Verhoef, Roger Schutgens, Marjolein Peters, Yaping Wu y Jan Willem Akkerman. "Role of glycoprotein Ibα mobility in platelet function". Thrombosis and Haemostasis 103, n.º 05 (2010): 1033–43. http://dx.doi.org/10.1160/th09-11-0751.
Texto completoMir, Sonia, Sajda Ashraf, Maria Saeed, Atta-ur Rahman y Zaheer Ul-Haq. "Protonation states at different pH, conformational changes and impact of glycosylation in synapsin Ia". Physical Chemistry Chemical Physics 23, n.º 31 (2021): 16718–29. http://dx.doi.org/10.1039/d1cp00531f.
Texto completoBarszczewski, Marcin, John J. Chua, Alexander Stein, Ulrike Winter, Rainer Heintzmann, Felipe E. Zilly, Dirk Fasshauer, Thorsten Lang y Reinhard Jahn. "A Novel Site of Action for α-SNAP in the SNARE Conformational Cycle Controlling Membrane Fusion". Molecular Biology of the Cell 19, n.º 3 (marzo de 2008): 776–84. http://dx.doi.org/10.1091/mbc.e07-05-0498.
Texto completoYu, Tao, Xing Wu, Kiran B. Gupta y Dennis F. Kucik. "Affinity, lateral mobility, and clustering contribute independently to β2-integrin-mediated adhesion". American Journal of Physiology-Cell Physiology 299, n.º 2 (agosto de 2010): C399—C410. http://dx.doi.org/10.1152/ajpcell.00039.2009.
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