Literatura académica sobre el tema "Back-splicing"
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Artículos de revistas sobre el tema "Back-splicing"
Hoffmann, Tobias y Juan Valcárcel. "Splicing Calls Back". Cell 179, n.º 7 (diciembre de 2019): 1446–47. http://dx.doi.org/10.1016/j.cell.2019.11.028.
Texto completoWang, Jun y Liangjiang Wang. "Deep learning of the back-splicing code for circular RNA formation". Bioinformatics 35, n.º 24 (11 de mayo de 2019): 5235–42. http://dx.doi.org/10.1093/bioinformatics/btz382.
Texto completoZhang, Xiao-Ou, Rui Dong, Yang Zhang, Jia-Lin Zhang, Zheng Luo, Jun Zhang, Ling-Ling Chen y Li Yang. "Diverse alternative back-splicing and alternative splicing landscape of circular RNAs". Genome Research 26, n.º 9 (30 de junio de 2016): 1277–87. http://dx.doi.org/10.1101/gr.202895.115.
Texto completoZhang, Peng, Xiao-Ou Zhang, Tingting Jiang, Lingling Cai, Xiao Huang, Qi Liu, Dan Li et al. "Comprehensive identification of alternative back-splicing in human tissue transcriptomes". Nucleic Acids Research 48, n.º 4 (24 de enero de 2020): 1779–89. http://dx.doi.org/10.1093/nar/gkaa005.
Texto completoZlotorynski, Eytan. "Intron definition, exon definition and back-splicing revisited". Nature Reviews Molecular Cell Biology 20, n.º 11 (23 de septiembre de 2019): 661. http://dx.doi.org/10.1038/s41580-019-0178-3.
Texto completoZhang, Ke, Guijun Shang, Abhilash Padavannil, Juan Wang, Ramanavelan Sakthivel, Xiang Chen, Min Kim et al. "Structural–functional interactions of NS1-BP protein with the splicing and mRNA export machineries for viral and host gene expression". Proceedings of the National Academy of Sciences 115, n.º 52 (11 de diciembre de 2018): E12218—E12227. http://dx.doi.org/10.1073/pnas.1818012115.
Texto completoPitolli, Consuelo, Alberto Marini, Claudio Sette y Vittoria Pagliarini. "Non-Canonical Splicing and Its Implications in Brain Physiology and Cancer". International Journal of Molecular Sciences 23, n.º 5 (4 de marzo de 2022): 2811. http://dx.doi.org/10.3390/ijms23052811.
Texto completoHasimbegovic, Ena, Victor Schweiger, Nina Kastner, Andreas Spannbauer, Denise Traxler, Dominika Lukovic, Mariann Gyöngyösi y Julia Mester-Tonczar. "Alternative Splicing in Cardiovascular Disease—A Survey of Recent Findings". Genes 12, n.º 9 (21 de septiembre de 2021): 1457. http://dx.doi.org/10.3390/genes12091457.
Texto completoTijsen, Anke J., Lucía Cócera Ortega, Yolan J. Reckman, Xiaolei Zhang, Ingeborg van der Made, Simona Aufiero, Jiuru Li et al. "Titin Circular RNAs Create a Back-Splice Motif Essential for SRSF10 Splicing". Circulation 143, n.º 15 (13 de abril de 2021): 1502–12. http://dx.doi.org/10.1161/circulationaha.120.050455.
Texto completoLezzhov, Alexander A., Anastasia K. Atabekova, Denis A. Chergintsev, Ekaterina A. Lazareva, Andrey G. Solovyev y Sergey Y. Morozov. "Viroids and Retrozymes: Plant Circular RNAs Capable of Autonomous Replication". Plants 14, n.º 1 (27 de diciembre de 2024): 61. https://doi.org/10.3390/plants14010061.
Texto completoTesis sobre el tema "Back-splicing"
Ladet, Julien. "Dérégulation de la biogénèse des ARN circulaires par l'oncoprotéine HBZ de HTLV-1 et conséquences fonctionnelles dans la Leucémie T de l'Adulte (ATL)". Electronic Thesis or Diss., Lyon, École normale supérieure, 2024. http://www.theses.fr/2024ENSL0099.
Texto completoThe Human T-cell Leukemia Virus type 1 (HTLV-1) is responsible for Adult T-cell Leukemia/Lymphoma (ATL), a highly aggressive malignancy of CD4+ T-cells. ATL is characterized by significant transcriptome reprogramming, particularly through alterations in alternative splicing profiles of protein-coding genes. My thesis focuses on splicing modifications primarily affecting non-coding RNA, specifically circular RNA (circRNA), which originate from a back-splicing mechanism involving RNA regulators, such as RNA helicases. circRNA play diverse roles in regulating gene expression, including controlling the availability of microRNA (miRNA) and other RNA-binding proteins. In this context, my thesis aimed to characterize the expression profiles of circRNA in chronic, acute, and lymphomatous ATL samples, as well as to explore the role of the viral oncogene HBZ in these alterations and their functional consequences. Through RNA-sequencing (RNA-seq) analyses of a cohort of 25 patients, as well as in cell lines either expressing HBZ or not, we identified several HBZ-regulated circRNA, notably circRNA-AFF2 (circAFF2), which may be linked to tumor aggressiveness. At the molecular level, we discovered that HBZ interacts with RNA helicase DHX9, a key regulator of circRNA biogenesis. HBZ enhances DHX9 recruitment to primary AFF2 RNA, while inhibiting its helicase activity, leading to the accumulation of double-stranded RNA that promotes the formation of circAFF2. Functionally, we demonstrated that in vitro production of circRNA, particularly the delivery of synthetic circAFF2, significantly increases the proliferation of HBZ-expressing and HTLV-1-transformed cells, whereas inhibition of endogenous circAFF2 reduces tumor cell viability. These findings reveal, for the first time, the critical role of circRNA deregulation in the survival of ATL cells though an HBZ:DHX9 axis, and highlight the potential of circRNA as novel tools or therapeutic targets to explore in the treatment of ATL
Lin, Ying-Chen y 林盈甄. "Promoter Activity and Alternative Splicing Gene Expression Analysis of White-back Associated Gene (OsWB) in Rice (Oryza sativa L.)". Thesis, 2008. http://ndltd.ncl.edu.tw/handle/43283915906179669636.
Texto completo國立臺灣大學
農藝學研究所
96
Regulation of gene expression is an essential issue for plant growth, development and environmental responses. In this study, we focus on the gene expression study of a white back associated gene, OsWB, in rice. The accumulation of OsWB protein had been shown to be negatively correlated with chalkiness during rice grain formation under high temperature. However, the regulation of OsWB gene expression and its corresponding physiological function remains to be addressed. To reach this goal, we first characterized the alternative splicing gene expression pattern of OsWB1 at post-transcriptional level. Also, we carried out the promoter activity analysis of OsWB1 either with transient gene activation analysis or transgenic rice plant. By RT-PCR analysis, we identified putative 11 alternative splicing transcript variants (ASTVs) of OsWB1 in TNG 67 rice. The length of these ASTVs can be distributed from 210 bp to 1.5 kb. Comparison of various OsWB1 ASTVs sequence revealed that the process of alternative splicing is dependent on short direct repeat sequence. We are also interested in understanding whether the alternative splicing gene expression of OsWB1 can be affected under different tissues, developmental stages and different abiotic stresses. The results showed that among various OsWB1 transcript variants, the expression of OsWB1-c transcript is highest in booting tissues of rice. OsWB1-b transcript expression was decreased under high temperature but the amount of OsWB1-c transcript remained constant. In addition, the gene expression pattern of OsWB1 is unique in mature rice grains. To further understand how OsWB1 gene expression is regulated at transcriptional level, the promoter sequence of OsWB1 is analyzed and searched for various responsive cis-acting DNA elements. Several elements can be found, including ABA、Me-JA、LTRECOREATCOR15 within OsWB1 promoter. We then used transient gene expression assay to study the relationship between OsWB1 gene expression and plant hormone ABA. Preliminary result indicated that the expression of OsWB1 (1.4 Kb)::GUS can be induced at least ten folds by ABA. To fully understand the subcellular-level gene expression and regulation of OsWB1, the transgenic rice plant of OsWB1 (1.4 Kb)::GUS was also produced. It may due to the weak activity of OsWB1 promoter, the GUS staining did not provide any positive result in various tissues of transgenic rice. Taken together, this study proved that OsWB1 expression is not only controlled by its own promoter but also regulated by alternative splicing.
Capítulos de libros sobre el tema "Back-splicing"
Dong, Rui, Xu-Kai Ma, Ling-Ling Chen y Li Yang. "Genome-Wide Annotation of circRNAs and Their Alternative Back-Splicing/Splicing with CIRCexplorer Pipeline". En Epitranscriptomics, 137–49. New York, NY: Springer New York, 2018. http://dx.doi.org/10.1007/978-1-4939-8808-2_10.
Texto completoYang, Yun y Zefeng Wang. "Constructing GFP-Based Reporter to Study Back Splicing and Translation of Circular RNA". En Methods in Molecular Biology, 107–18. New York, NY: Springer New York, 2018. http://dx.doi.org/10.1007/978-1-4939-7562-4_9.
Texto completoStier, Heike. "Alternative Splicing and Disease". En Handbook of Research on Systems Biology Applications in Medicine, 291–310. IGI Global, 2009. http://dx.doi.org/10.4018/978-1-60566-076-9.ch017.
Texto completoMarlatt, Michael. "13. Splicing Back against the Censors: How Archive/ Counter-Archive Saved the Ontario Board of Censors’ Film Censorship Records from Destruction". En The Screen Censorship Companion, 229–44. University of Exeter Press, 2024. http://dx.doi.org/10.47788/xlvw2388.
Texto completoMohan, Aiswarya, Deepthi K y Arun TM. "Computational Approaches for Predicting circRNA-Disease Associations: A Comprehensive Review and Integration of Methods". En Applied Intelligence and Computing, 195–208. Soft Computing Research Society, 2024. http://dx.doi.org/10.56155/978-81-955020-9-7-20.
Texto completoActas de conferencias sobre el tema "Back-splicing"
He, Chengxin, Lei Duan, Huiru Zheng, Yuening Qu y Zhenyang Yu. "SIDE: Sequence-Interaction-Aware Dual Encoder for Predicting circRNA Back-Splicing Events". En 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, 2023. http://dx.doi.org/10.1109/bibm58861.2023.10385340.
Texto completoWang, Jun y Liangjiang Wang. "Prediction of back-splicing sites reveals sequence compositional features of human circular RNAs". En 2017 IEEE 7th International Conference on Computational Advances in Bio- and Medical Sciences (ICCABS). IEEE, 2017. http://dx.doi.org/10.1109/iccabs.2017.8114308.
Texto completoAyyildiz, D., E. Dassi, T. Tripathi, A. Monziani, E. Kerschbamer, E. Pennati, D. Ferrarini et al. "A05 Alterations in linear and back-splicing as new players in huntington’s disease pathogenesis". En EHDN 2018 Plenary Meeting, Vienna, Austria, Programme and Abstracts. BMJ Publishing Group Ltd, 2018. http://dx.doi.org/10.1136/jnnp-2018-ehdn.5.
Texto completoZhang, Cong, Eric Numkam Fokoua, Songnian Fu, Francesco Poletti, David J. Richardson y Radan Slavík. "Low loss and back-reflection interconnection between SMF and hollow core fiber by angled fusion splicing". En CLEO: Applications and Technology. Washington, D.C.: Optica Publishing Group, 2022. http://dx.doi.org/10.1364/cleo_at.2022.jth3b.2.
Texto completoPellegrini, Miguel, Dilara Ayyildiz, Guendalina Bergonzoni, Alan Monziani, Takshashila Tripathi, Jessica Döring, Giulia Cardamone et al. "D12 Faulty linear and back-splicing in Huntington’s disease: novel players in the pathologic process hint at innovative RNA biomarkers". En EHDN 2022 Plenary Meeting, Bologna, Italy, Abstracts. BMJ Publishing Group Ltd, 2022. http://dx.doi.org/10.1136/jnnp-2022-ehdn.68.
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