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Dissertations / Theses on the topic 'Zinc finger'

Author: Grafiati

Published: 4 June 2021

Last updated: 25 July 2025

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1

Looman, Camilla. "The ABC of KRAB zinc finger proteins." Doctoral thesis, Uppsala : Acta Universitatis Upsaliensis : Univ.-bibl. [distributör], 2003. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-3515.

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2

Lanfear, Jeremy. "The molecular evolution of zinc-finger genes." Thesis, University of Oxford, 1990. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.291274.

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3

Crawford, Catherine. "Characterisation of endogenous KRAB zinc finger proteins." Thesis, University of Edinburgh, 2009. http://hdl.handle.net/1842/4225.

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The Krüppel-associated box (KRAB) zinc finger protein (ZFP) genes comprise one of the largest gene families in the mammalian genome, encoding transcription factors with an N-terminal KRAB domain and C-terminal zinc fingers. The KRAB domain interacts with a co-repressor protein, KAP-1, which can recruit various factors causing transcriptional repression of genes to which KRAB ZFPs bind. Little is currently known about the gene targets of the ~400 human and mouse KRAB ZFPs. Many KRAB ZFPs interact with factors other than KAP-1. To identify proteins that may interact with one particular KRAB ZFP

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4

Rebar, Edward John. "Selection studies of zinc finger-DNA recognition." Thesis, Massachusetts Institute of Technology, 1997. http://hdl.handle.net/1721.1/10383.

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5

Simpson, Raina Jui Yu. "The multiple roles of zinc finger domains." Thesis, The University of Sydney, 2004. http://hdl.handle.net/2123/655.

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Zinc finger (ZnF) domains are prevalent in eukaryotes and play crucial roles in mediating protein-DNA and protein-protein interactions. This Thesis focuses on the molecular details underlying interactions mediated by two ZnF domains. The GATA-1 protein is vital for the development of erythrocytes and megakaryocytes. Pertinent to the protein function is the N-terminal ZnF. In particular, this domain mediates interaction with DNA containing GATC motifs and the coactivator protein FOG. The importance of these interactions was illustrated by the findings in Chapter 3 that naturally occurring muta

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6

Simpson, Raina Jui Yu. "The multiple roles of zinc finger domains." University of Sydney. Molecular and Microbial Biosciences, 2004. http://hdl.handle.net/2123/655.

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Zinc finger (ZnF) domains are prevalent in eukaryotes and play crucial roles in mediating protein-DNA and protein-protein interactions. This Thesis focuses on the molecular details underlying interactions mediated by two ZnF domains. The GATA-1 protein is vital for the development of erythrocytes and megakaryocytes. Pertinent to the protein function is the N-terminal ZnF. In particular, this domain mediates interaction with DNA containing GATC motifs and the coactivator protein FOG. The importance of these interactions was illustrated by the findings in Chapter 3 that naturally occurring muta

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7

Wang, Zhonghua Laity John H. "Characterization of novel structure-regulatory relationships within interacting two-finger Cys₂His₂ zinc finger protein motifs." Diss., UMK access, 2008.

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Thesis (Ph. D.)--School of Biological Sciences. University of Missouri--Kansas City, 2008.<br>"A dissertation in cell biology and biophysics and molecular biology and biochemistry." Advisor: John H. Laity. Typescript. Vita. Title from "catalog record" of the print edition Description based on contents viewed Sept.12, 2008. Includes bibliographical references (leaves 148-166). Online version of the print edition.

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8

Fairall, Louise. "The interaction of zinc-finger proteins with DNA." Thesis, University of Cambridge, 1992. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.314849.

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9

Knight, Robert D. "C2H2 zinc finger gene evolution in the Metazoa." Thesis, University of Reading, 2000. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.312566.

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10

Younce, Craig. "Zinc-Finger Protein MCPIP in Cell Death and Differentiation." Doctoral diss., University of Central Florida, 2009. http://digital.library.ucf.edu/cdm/ref/collection/ETD/id/2279.

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Monocyte chemotactic protein-1 (MCP-1) plays a critical role in the development of cardiovascular diseases. How MCP-1 contributes to the development of heart disease is not understood. We present evidence that MCP-1 causes death in cardiac myoblasts, H9c2 by inducing oxidative stress, ER stress and autophagy via a novel Zn-finger protein, MCP-1 induced protein (MCPIP). MCPIP expression caused cell death and knockdown of MCPIP, attenuated MCP-1 induced cell death. Expression of MCPIP resulted in induction of iNOS and production of reactive oxygen (ROS). It caused induction of NADPH oxidase subu

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11

Harris, Brett Stuart. "Zinc-finger transcription factors in the Schwann cell lineage." Thesis, University College London (University of London), 2001. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.395480.

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12

Elrod-Erickson, Monica (Monica Ann) 1969. "Structural and biochemical studies of zinc finger-DNA complexes." Thesis, Massachusetts Institute of Technology, 1998. http://hdl.handle.net/1721.1/49650.

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13

Allen, Carl E. "Functional analysis of the large zinc finger protein, KRC /." The Ohio State University, 2000. http://rave.ohiolink.edu/etdc/view?acc_num=osu14881967817341.

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14

Schaufler, Lawrence E. "NMR studies of the ADR1 zinc finger transcription factor /." Thesis, Connect to this title online; UW restricted, 2001. http://hdl.handle.net/1773/5079.

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15

Jantz, Derek Neil. "The DNA-binding properties of semisynthetic zinc finger proteins." Available to US Hopkins community, 2003. http://wwwlib.umi.com/dissertations/dlnow/3080688.

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16

Brayer, Kathryn Jo. "The Protein Binding Potential of C2H2 Zinc Finger Domains." Diss., The University of Arizona, 2008. http://hdl.handle.net/10150/195146.

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Cys2-His2 (C2H2) zinc finger domains were originally identified as DNA binding domains, and uncharacterized domains are typically assumed to bind DNA. However, a growing body of evidence suggests an important and widespread role for these domains in protein binding. Over 100 C2H2 zinc finger-protein interactions have been described. This study uses common bioinformatics tools to identify sequence features that predict a DNA- or protein-binding function. Several issues, including uncertainties about the full functional capabilities of the zinc fingers, complicated these efforts. Therefore,

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17

Bhakta, Mital Subhash. "Highly Active Zinc Finger Nucleases by Extended Modular Assembly." Diss., The University of Arizona, 2012. http://hdl.handle.net/10150/265392.

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C2H2-zinc fingers (ZFs) are commonly found in transcription factors that code for nearly 3% of gene products in the human genome. ZF proteins are commonly involved in gene regulation during development, cell differentiation, and tumor suppression. Each "finger" is a domain composed of approximately 30 amino acids. Since the discovery of these domains over 25 years ago, several groups have contributed to the structural and biochemical knowledge to understand their DNA-binding properties. Taking advantage of the simplicity of manipulating the DNA-binding potential of a ZF, the technology has now

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18

El-Husseini, Alaa El-Din A. S. "Molecular cloning and characterization of a novel zinc finger protein, brain expressed RING finger protein (BERP)." Thesis, National Library of Canada = Bibliothèque nationale du Canada, 1997. http://www.collectionscanada.ca/obj/s4/f2/dsk3/ftp04/nq25043.pdf.

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19

Ullah, Mukta. "Characterization of the tetrameric monocytic leukemia zinc finger protein complex." Thesis, McGill University, 2006. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=99211.

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In human cells, histones bind DNA and form chromatin, a nucleoprotein complex important for various cellular processes. Abnormal histone modification is known to play causal roles in the development of cancer. Monocytic leukemia zinc finger protein (MOZ) is a MYST-family histone acetyltransferase whose gene is rearranged in chromosomal translocations giving rise to acute myeloid leukemia. This acetyltransferase functions as a potent transcriptional coactivator of Runx1 and Runx2, two homologous transcription factors that are important for definitive haematopoiesis and osteoblast maturation, re

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20

Ooi, Aik Teong. "Sequence-Specific DNA Detection Utilizing Custom-Designed Zinc Finger Proteins." Diss., The University of Arizona, 2007. http://hdl.handle.net/10150/194236.

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DNA diagnostics are important technologies in molecular and cellular biology. By allowing identification of specific sequences, DNA-based diagnostics potentially provide more accurate and rapid results than protein- or antigen-based diagnostics, primarily because phenotypic changes come much later than changes in genotype. Despite this advantage, there are fewer diagnostic or imaging systems that target DNA than those targeting proteins, antibodies, or antigens.Each type of DNA-based diagnostic has its own, unique set of limitations; however, most can be attributed to issues related to sequenc

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21

Cradick, Thomas James. "Designing zinc finger nucleases that specifically cleave Hepatitis B viral DNA." Diss., University of Iowa, 2009. https://ir.uiowa.edu/etd/790.

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Hepatitis B virus chronically infects 350-400 million people worldwide. It often leads to hepatocellular carcinoma, which causes >1 million deaths yearly. Current therapies prevent new viral genome formation but do not target pre-existing viral genomic DNA, thus curing only ~1/2 of patients. We targeted hepatitis B virus DNA for cleavage using zinc finger nucleases, which cleave as dimers. Co-transfection of our zinc finger nuclease pair with a target plasmid containing the hepatitis B virus genome resulted in specific cleavage. After three days in culture, 26% of the target remained linear, w

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22

Fu, Fengli. "Computational approaches to understand interactions between zinc finger proteins and DNA." [Ames, Iowa : Iowa State University], 2010. http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqdiss&rft_dat=xri:pqdiss:3403797.

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23

Nomura, Akiko. "Redesign of the metal coordination sites in the zinc finger peptides." 京都大学 (Kyoto University), 2003. http://hdl.handle.net/2433/149185.

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24

Edwards, Jessica K. "Investigating the roles of zinc finger homeobox 3 in circadian rhythms." Thesis, University of Oxford, 2013. http://ora.ox.ac.uk/objects/uuid:1444375c-b7de-425a-a2ed-53b715833737.

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25

Méndez, Vidal Cristina. "Molecular studies of WIG-1, A P53-induced zinc finger protein /." Stockholm, 2003. http://diss.kib.ki.se/2003/91-7349-732-0.

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26

Heath, Helen Elizabeth. "CTCF: comprehending.the complex functions of an 11-zinc-finger transcription factor." [S.l.] : Rotterdam : [The Author] ; Erasmus University [Host], 2007. http://hdl.handle.net/1765/10861.

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27

Nobelen, Suzanne van de. "Touched by CTCF analysis of a multi-functional zinc finger protein /." [S.l.] : Rotterdam : [The Author] ; Erasmus University [Host], 2008. http://hdl.handle.net/1765/12282.

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28

Dutnall, Robert Nicholas. "Structural and functional studies of a zinc finger DNA-binding domain." Thesis, University of Cambridge, 1995. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.360030.

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29

Greisman, Harvey Allan. "A strategy for selecting zinc finger proteins for desired DNA sequences." Thesis, Massachusetts Institute of Technology, 1997. http://hdl.handle.net/1721.1/10773.

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30

Delahaye, Celia. "Characterisation of the non-canonical zinc finger protein ZFP263 in mouse." Thesis, University of Cambridge, 2018. https://www.repository.cam.ac.uk/handle/1810/278697.

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Multicellular organisms are composed of a number of different specialised cells that all carry the same genetic material but are highly divergent in their functions and characteristics. This diversity is only allowed because sets of specific genes are expressed in one type of cells and silent in others. A precise control mechanism is required to fine-tune gene regulation and relies on chromatin structure and regulatory proteins. One of the largest families of DNA-binding factors that influence this in human and mouse is the KRAB zinc finger protein (KZFP) family. KZFPs are thought to have rapi

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31

Tsotsoros, Samantha. "Platinum Complexes and Zinc Finger Proteins: From Target Recognition to Fixation." VCU Scholars Compass, 2014. http://scholarscompass.vcu.edu/etd/610.

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Bioinorganic chemistry strives to understand the roles of metals in biological systems, whether in the form of naturally occurring or addition of non-essential metals to natural systems. Metal ions play vital roles in many cellular functions such as gene expression/regulation and DNA transcription and repair. The study of metal-protein-DNA/RNA interactions has been relatively unexplored. It is important to understand the role of metalloprotein interactions with DNA/RNA as this enhanced knowledge may lead to better understanding of diseases and therefore more effective treatments. A major miles

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32

Yang, Sile. "Functional Characterisation and Therapeutic Potential of the Zinc Finger Protein ZNF827." Thesis, The University of Sydney, 2019. http://hdl.handle.net/2123/21100.

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The ends of linear eukaryotic chromosomes resemble double strand breaks, susceptible to the vigilant cellular DNA damage response machinery. Telomeres are specialised nucleoprotein structures found at the ends of human chromosomes that function as a protective cap safeguarding the integrity of the genome. In normal human somatic cells, telomeres shorten with each replicative cell division. Eventually, shortened telomeres trigger cellular senescence and apoptosis. Cancer cells overcome this proliferative barrier by acquiring a telomere maintenance mechanism. Alternative Lengthening of Telomeres

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33

Kentner, Jeffrey Louis. "Engineering the zinc finger recombinase for use in targeted genomic editing." Thesis, University of Glasgow, 2015. http://theses.gla.ac.uk/6910/.

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34

Bird, Amanda Jane. "Zinc homeostasis in Synechococcus PCC 7942." Thesis, University of Newcastle Upon Tyne, 1998. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.245707.

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35

Hamilton, Tatyana. "Protein-nucleic acid interactions of Wilms' tumor and TFIIIA zinc finger proteins." Thesis, National Library of Canada = Bibliothèque nationale du Canada, 1998. http://www.collectionscanada.ca/obj/s4/f2/dsk2/ftp02/NQ34266.pdf.

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36

Green, Andrew F. D. "Metal ligation in ZIF268, a zinc finger protein, effects on DNA binding." Thesis, National Library of Canada = Bibliothèque nationale du Canada, 1996. http://www.collectionscanada.ca/obj/s4/f2/dsk3/ftp04/MQ45850.pdf.

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37

Pelletier, Nadine. "The monocytic Leukemia zinc finger protein MOZ and its related factor MORF /." Thesis, McGill University, 2004. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=84309.

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Regulation of chromatin structure involves histone modifications such as acetylation. Since 1996, the identification and characterization of histone acetyltransferases have had tremendous impact on our understanding of the molecular mechanisms related to eukaryotic gene regulation and human diseases associated with abnormal chromatin functions. The MYST family of histone acetyltransferases is very interesting because of their various biological functions. In agreement with the correlation between aberrant histone acetylation and cancer, the MYST family proteins MOZ and MORF are linked t

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38

Lin, Ying [Verfasser]. "Isolation and characterization of DNA aptamers for zinc finger proteins / Ying Lin." Berlin : Freie Universität Berlin, 2009. http://d-nb.info/1023581051/34.

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39

Kim, Juhwa. "Multiplexed Detection of Double-Stranded Pathogenic DNA with Engineered Zinc Finger Proteins." TopSCHOLAR®, 2016. http://digitalcommons.wku.edu/theses/1616.

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The development of a new technology for the detection of doublestranded (ds) DNA enables multiple biomedical applications including identifying multiple pathogens simultaneously. We previously employed colorimetric SEquence-Enabled Reassembly with TEM-1 β-lacatamase (SEER-LAC) to detect specific bacterial DNA sequence. SEER-Lac consists of the two inactive β-lactamase fragments which of each attached to a zinc finger protein (ZFP) would reassemble into an active full-length enzyme upon ZFPs binding to its target DNA. Here, we engineered two pairs of ZFPs which of each recognizes shiga toxin in

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40

Bahadoran, Mahshid. "Role of the Transcription Factor Zinc Finger Protein 521 on Runx2 Acetylation." Thesis, Harvard University, 2015. http://nrs.harvard.edu/urn-3:HUL.InstRepos:17331945.

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Runx2 is a transcription factor that has a crucial role in the development of bone; haploinsufficiency of Runx2 leads to the autosomal-dominant disorder, cleidocranial dysplasia (CCD) characterized by various skeletal abnormalities. Zinc finger protein 521 (Zfp521) is a transcription factor that is expressed in several cell types including bone. Recent studies demonstrated that Zfp521 interacts with Runx2 and regulates osteoblast maturation at least in part by repressing the transcriptional activity of Runx2; furthermore, it was demonstrated that the repression of Runx2 by Zfp521 involves the

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41

PIERACCIOLI, MARCO. "Functional role of the zinc finger factor ZNF281 in DNA damage response." Doctoral thesis, Università degli Studi di Roma "Tor Vergata", 2015. http://hdl.handle.net/2108/203092.

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La sopravvivenza degli organismi dipende dall'accurata trasmissione dell'informazione genetica durante i processi che portano alla divisione cellulare. Questa fedele trasmissione richiede non soloun'elevata precisione nella replicazione del DNA e nella perfetta segregazione cromosomica, ma anche la capacità di sopravvivere ai danni al DNA spontanei o indotti minimizzando il numero di mutazioni ereditabili dalle cellule figlie. Le cellule sono constantemente soggette agli effetti citotossici e mutageni degli agenti in grado di causare danno al DNA. Per rispondere e difendersi da questa minaccia

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42

Gaither, L. Alex. "Molecular and biochemical characterization of the human zinc transport proteins hZip1 & hZip2 /." free to MU campus, to others for purchase, 2001. http://wwwlib.umi.com/cr/mo/fullcit?p3025618.

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43

Czerny, Florian. "Development of Zinc-Finger-Based Artificial Restriction Endonucleases and Fluorescent Peptidyl Metal Sensors." Doctoral thesis, Niedersächsische Staats- und Universitätsbibliothek Göttingen, 2016. http://hdl.handle.net/11858/00-1735-0000-002B-7CAB-3.

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44

Chung, Ho Ryun. "The zinc finger associated domain of Drosophila melanogaster, its evolution and phylogenetic restriction." [S.l. : s.n.], 2005. http://deposit.ddb.de/cgi-bin/dokserv?idn=974179248.

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45

Mark, Charlotta. "Three Subfamilies of KRAB Zinc Finger Proteins : A Structural, Functional and Evolutionary Analysis." Doctoral thesis, Uppsala University, Department of Cell and Molecular Biology, 2003. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-3512.

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<p>Krüppel-related zinc finger proteins constitute the largest single class of transcription factors within the human genome. Members of this protein family have the ability to either activate or repress transcription depending on the presence of specific activator or repressor domains within the protein. Approximately one third of the Krüppel-related zinc finger proteins contain an evolutionarily well-conserved repressor domain termed the KRAB domain. This domain acts as a potent repressor of transcription by interacting with the co-repressor protein, TIF1β. TIF1β then, in turn, recruits HP1

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46

Yan, Wei. "Design of artificial 6-zinc finger peptides : linker alteration and DNA binding selectivity." 京都大学 (Kyoto University), 2008. http://hdl.handle.net/2433/137164.

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47

Kulczyk, Arkadiusz Wojciech. "NMR and biochemical studies of novel zinc-finger domains binding to nicked DNA." Thesis, University of Cambridge, 2003. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.619875.

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48

Özkan, Burak. "Role of zinc finger protein WIZ in the recruitment of histone methylase G9a." Thesis, University of Edinburgh, 2017. http://hdl.handle.net/1842/28731.

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The N-terminal tails of histones are subject to many chemical modifications that are involved in a variety of biological functions. Histone methylation is a major epigenetic modification found in both single and multicellular organisms and is directly involved in the regulation of gene expression. Methylation of lysine 9 of histone 3 (H3K9) has been shown to have diverse functions depending on the number of methyl groups added; H3K9me1 marks the active promoters, while H3K9me2 and H3K9me3 are present within inactive gene promoters and pericentric heterochromatin. G9a, also known as euchromatic

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49

Oliveira, Alessandra Rejane Ericsson de. "Identificação e caracterização de uma proteína com motivos ZINC FINGER de Trypanosoma cruzi." reponame:Repositório Institucional da UnB, 2006. http://repositorio.unb.br/handle/10482/3320.

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Tese (doutorado)—Universidade de Brasília, Instituto de Ciências Biológicas, Departamento de Biologia Celular, 2006.<br>Submitted by Larissa Ferreira dos Angelos (ferreirangelos@gmail.com) on 2009-11-14T12:47:05Z No. of bitstreams: 1 2006_Alessandra Rejane Ericsson de Oliveira.pdf: 1765643 bytes, checksum: 9a175047678704e91e49247033e86e47 (MD5)<br>Approved for entry into archive by Marília Freitas(marilia@bce.unb.br) on 2010-01-19T16:03:40Z (GMT) No. of bitstreams: 1 2006_Alessandra Rejane Ericsson de Oliveira.pdf: 1765643 bytes, checksum: 9a175047678704e91e49247033e86e47 (MD5)<br>Made ava

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50

Del, Rio Samuel. "Structural and functional studies of Xenopus laevis transcription factor IIIA zinc finger mutants." Case Western Reserve University School of Graduate Studies / OhioLINK, 1992. http://rave.ohiolink.edu/etdc/view?acc_num=case1056548235.

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