Academic literature on the topic 'Whole genome sequences (WGS)'
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Journal articles on the topic "Whole genome sequences (WGS)"
Asif, Kinza, Denise O’Rourke, Alistair R. Legione, Pollob Shil, Marc S. Marenda, and Amir H. Noormohammadi. "Whole-genome based strain identification of fowlpox virus directly from cutaneous tissue and propagated virus." PLOS ONE 16, no. 12 (December 16, 2021): e0261122. http://dx.doi.org/10.1371/journal.pone.0261122.
Full textTherrien, Dustin A., Kranti Konganti, Jason J. Gill, Brian W. Davis, Andrew E. Hillhouse, Jordyn Michalik, H. Russell Cross, Gary C. Smith, Thomas M. Taylor, and Penny K. Riggs. "Complete Whole Genome Sequences of Escherichia coli Surrogate Strains and Comparison of Sequence Methods with Application to the Food Industry." Microorganisms 9, no. 3 (March 16, 2021): 608. http://dx.doi.org/10.3390/microorganisms9030608.
Full textVestal, Grant, Steven Bruzek, Amanda Lasher, Amorce Lima, and Suzane Silbert. "Whole-Genome Sequencing for Bacterial Strain Typing Using the iSeq100 Platform." Infection Control & Hospital Epidemiology 41, S1 (October 2020): s434. http://dx.doi.org/10.1017/ice.2020.1098.
Full textChattaway, Marie A., Ulf Schaefer, Rediat Tewolde, Timothy J. Dallman, and Claire Jenkins. "Identification of Escherichia coli and Shigella Species from Whole-Genome Sequences." Journal of Clinical Microbiology 55, no. 2 (December 14, 2016): 616–23. http://dx.doi.org/10.1128/jcm.01790-16.
Full textRabinowitz, Peter, Bar Zilberman, Yair Motro, Marilyn C. Roberts, Alex Greninger, Lior Nesher, Shalom Ben-Shimol, et al. "Whole Genome Sequence Analysis of Brucella melitensis Phylogeny and Virulence Factors." Microbiology Research 12, no. 3 (August 24, 2021): 698–710. http://dx.doi.org/10.3390/microbiolres12030050.
Full textGunasekara, A. W. A. C. W. R., L. G. T. G. Rajapaksha, and T. L. Tung. "Whole-genome sequence analysis through online web interfaces: a review." Genomics & Informatics 20, no. 1 (March 31, 2022): e3. http://dx.doi.org/10.5808/gi.20038.
Full textAtxaerandio-Landa, Aitor, Ainhoa Arrieta-Gisasola, Lorena Laorden, Joseba Bikandi, Javier Garaizar, Irati Martinez-Malaxetxebarria, and Ilargi Martinez-Ballesteros. "A Practical Bioinformatics Workflow for Routine Analysis of Bacterial WGS Data." Microorganisms 10, no. 12 (November 29, 2022): 2364. http://dx.doi.org/10.3390/microorganisms10122364.
Full textRuppitsch, Werner, Ariane Pietzka, Karola Prior, Stefan Bletz, Haizpea Lasa Fernandez, Franz Allerberger, Dag Harmsen, and Alexander Mellmann. "Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Whole-Genome Sequence-Based Typing of Listeria monocytogenes." Journal of Clinical Microbiology 53, no. 9 (July 1, 2015): 2869–76. http://dx.doi.org/10.1128/jcm.01193-15.
Full textChiaverini, Alexandra, Mostafa Y. Abdel-Glil, Jörg Linde, Domenico Galante, Valeria Rondinone, Antonio Fasanella, Cesare Cammà, Nicola D’Alterio, Giuliano Garofolo, and Herbert Tomaso. "Whole Genome Sequencing for Studying Bacillus anthracis from an Outbreak in the Abruzzo Region of Italy." Microorganisms 8, no. 1 (January 8, 2020): 87. http://dx.doi.org/10.3390/microorganisms8010087.
Full textPetronella, Nicholas, Palni Kundra, Olivia Auclair, Karine Hébert, Mary Rao, Kyle Kingsley, Katrien De Bruyne, et al. "Changes detected in the genome sequences of Escherichia coli, Listeria monocytogenes, Vibrio parahaemolyticus, and Salmonella enterica after serial subculturing." Canadian Journal of Microbiology 65, no. 11 (November 2019): 842–50. http://dx.doi.org/10.1139/cjm-2019-0235.
Full textDissertations / Theses on the topic "Whole genome sequences (WGS)"
Haimel, Matthias. "Development of computational approaches for whole-genome sequence variation and deep phenotyping." Thesis, University of Cambridge, 2019. https://www.repository.cam.ac.uk/handle/1810/283563.
Full textGordon, Nicola. "Whole genome sequencing (WGS) as a unified platform for outbreak identification and resistance prediction in Staphylococcus aureus." Thesis, University of Oxford, 2016. https://ora.ox.ac.uk/objects/uuid:7d705b89-c5ed-4103-98fb-3f8637e88d32.
Full textKozma, Radoslav. "Inferring demographic history and speciation of grouse using whole genome sequences." Doctoral thesis, Uppsala universitet, Zooekologi, 2016. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-299926.
Full textJakt, Lars Martin. "Isolation of mouse Hoxb-3 protein binding sequences : a whole genome approach /." Thesis, Hong Kong : University of Hong Kong, 1999. http://sunzi.lib.hku.hk/hkuto/record.jsp?B21185505.
Full textKhoo, Choon-Kiat. "Chicken genome variations and selection : from sequences to consequences." Thesis, University of Edinburgh, 2017. http://hdl.handle.net/1842/28934.
Full textGladstein, Ariella. "Inference of Recent Demographic History of Population Isolates Using Genome-Wide High Density SNP Arrays and Whole Genome Sequences." Thesis, The University of Arizona, 2018. http://pqdtopen.proquest.com/#viewpdf?dispub=10839026.
Full textIn this dissertation I addressed the problem of SNP array bias when finding runs of ho- mozygosity. I demonstrated the pitfalls of using uninformed methods for finding runs of homozygosity and provide better alternatives, including a more reliable algorithm for identi- fying runs of homozygosity than the most commonly used program. I then provide a review of Ashkenazi population genetics. Next, I developed software to efficiently run millions of whole chromosome simulations, which is publicly available through GitHub, DockerHub, and on the CyVerse Discovery Environment. I applied my computational method to use Approximate Bayesian Computation to test models of Ashkenazi Jewish demographic his- tory. I found that the Ashkenazi Jews are comprised of genetically distinct subgroups from Eastern and Western Europe, as a result of massive population growth in the Eastern Ashkenazi Jews, but not in the Western Ashkenazi Jews. I further confirmed that the Ashkenazi Jews do not primarily originate from Khazaria. Finally, I created a correction for SNP array ascertainment bias in the median and total length of runs of homozygosity, and applied this correction to world-wide human populations. However, I found that ascertainment bias plays a minor role compared to SNP array bias in human populations.
Alosaimi, Shatha Mobarak. "Leveraging Whole Genome Sequences to Compare Mutational Mechanism and Identify Medically Relevant Variation in African versus Non-African Descend Populations." Master's thesis, Faculty of Health Sciences, 2020. http://hdl.handle.net/11427/32191.
Full textWiredu, Boakye Dominic. "Life in the nucleus : the genomic basis of energy exploitation by intranuclear Microsporidia." Thesis, University of Exeter, 2016. http://hdl.handle.net/10871/26108.
Full textJäger, Sarah Christina [Verfasser]. "Hybrid Assembly of Whole Genome Shotgun Sequences of Two Sugar Beet (Beta vulgaris L.) Translocation Lines Carrying the Beet Cyst Nematode Resistance Gene Hs1-2 and Functional Analysis of Candidate Genes / Sarah Christina Jäger." Kiel : Universitätsbibliothek Kiel, 2013. http://d-nb.info/1054661898/34.
Full textFont, Porterias Neus 1994. "Genomic insights into an underrepresented population : the Romani." Doctoral thesis, TDX (Tesis Doctorals en Xarxa), 2022. http://hdl.handle.net/10803/673740.
Full textThe Romani people are the largest transnational minority ethnic group in Europe. They have a South Asian origin and during their diaspora to Europe, they experienced multiple founder effects and gene flow events. In this thesis, the analysis of genome-wide array data shows that Romani groups share a common South Asian, Middle Eastern and Balkan ancestry, while Iberian and Baltic groups experienced additional admixture with the surrounding non-Roma European populations. After characterising their genetic landscape, the study of whole-exome sequences from Spanish Romani suggests that non-Roma gene flow has counteracted the increase in mutational load caused by the founder effects. In addition, clinically relevant variants are traced back to both European and South Asian ancestral haplotypes consistent with the extensive gene flow. Thus, the present work represents a step forward to comprehensively depict the Romani demographic history and emphasises the need to study other underrepresented and historically excluded populations to fully capture human variation.
Books on the topic "Whole genome sequences (WGS)"
Crawford, Michael, and Rohina C. Rubicz. Molecular Genetic Evidence from Contemporary Populations for the Origins of Native North Americans. Edited by Max Friesen and Owen Mason. Oxford University Press, 2016. http://dx.doi.org/10.1093/oxfordhb/9780199766956.013.4.
Full textMuir, Stephanie. Studying City of God. Liverpool University Press, 2008. http://dx.doi.org/10.3828/liverpool/9781903663592.001.0001.
Full textAyala, Francisco J., and Camilo J. Cela-Conde. Neanderthals and modern humans. Oxford University Press, 2017. http://dx.doi.org/10.1093/oso/9780198739906.003.0011.
Full textBilański, Piotr. Trypodendron laeve Eggers w Polsce na tle wybranych aspektów morfologicznych i genetycznych drwalników (Trypodendron spp., Coleoptera, Curculionidae, Scolytinae). Publishing House of the University of Agriculture in Krakow, 2019. http://dx.doi.org/10.15576/978-83-66602-38-0.
Full textBook chapters on the topic "Whole genome sequences (WGS)"
Stessl, Beatrix, Martin Wagner, and Werner Ruppitsch. "Multilocus Sequence Typing (MLST) and Whole Genome Sequencing (WGS) of Listeria monocytogenes and Listeria innocua." In Listeria Monocytogenes, 89–103. New York, NY: Springer US, 2020. http://dx.doi.org/10.1007/978-1-0716-0982-8_7.
Full textArnemann, J. "Whole-Genome Sequenzierung (WGS)." In Springer Reference Medizin, 2509. Berlin, Heidelberg: Springer Berlin Heidelberg, 2019. http://dx.doi.org/10.1007/978-3-662-48986-4_3632.
Full textArnemann, J. "Whole-Genome Sequenzierung (WGS)." In Lexikon der Medizinischen Laboratoriumsdiagnostik, 1. Berlin, Heidelberg: Springer Berlin Heidelberg, 2018. http://dx.doi.org/10.1007/978-3-662-49054-9_3632-1.
Full textBharadwaj, Shiv, Vivek Dhar Dwivedi, and Nikhil Kirtipal. "Application of Whole Genome Sequencing (WGS) Approach Against Identification of Foodborne Bacteria." In Microbial Genomics in Sustainable Agroecosystems, 131–48. Singapore: Springer Singapore, 2019. http://dx.doi.org/10.1007/978-981-13-8739-5_7.
Full textShirasawa, Kenta, and Hiroyasu Kitashiba. "Genetic Maps and Whole Genome Sequences of Radish." In Compendium of Plant Genomes, 31–42. Cham: Springer International Publishing, 2017. http://dx.doi.org/10.1007/978-3-319-59253-4_3.
Full textGupta, Manoj Kumar, Ravindra Donde, S. Sabarinathan, Gayatri Gouda, Goutam Kumar Dash, Pallabi Pati, Sushil Kumar Rathore, et al. "Microsatellite Markers from Whole Genome and Transcriptomic Sequences." In Bioinformatics in Rice Research, 387–412. Singapore: Springer Singapore, 2021. http://dx.doi.org/10.1007/978-981-16-3993-7_18.
Full textHahn, Georg, Sharon Marie Lutz, Julian Hecker, Dmitry Prokopenko, and Christoph Lange. "Local and Global Stratification Analysis in Whole Genome Sequencing (WGS) Studies Using LocStra." In Computational Advances in Bio and Medical Sciences, 159–70. Cham: Springer International Publishing, 2020. http://dx.doi.org/10.1007/978-3-030-46165-2_13.
Full textRodriguez-R, Luis M., Ramon Rosselló-Móra, and Konstantinos T. Konstantinidis. "Identification and Classification of Prokaryotes using whole-genome sequences." In Trends in the systematics of bacteria and fungi, 217–30. Wallingford: CABI, 2021. http://dx.doi.org/10.1079/9781789244984.0217.
Full textBaroncelli, Riccardo, and Giovanni Cafà. "Genomic sequences for fungi." In Trends in the systematics of bacteria and fungi, 231–54. Wallingford: CABI, 2021. http://dx.doi.org/10.1079/9781789244984.0231.
Full textRiojas, Marco A., Andrew M. Frank, Samuel R. Greenfield, Stephen P. King, Conor J. Meehan, Michael Strong, Alice R. Wattam, and Manzour Hernando Hazbón. "Identification and Characterization of Mycobacterial Species Using Whole-Genome Sequences." In Methods in Molecular Biology, 399–457. New York, NY: Springer US, 2021. http://dx.doi.org/10.1007/978-1-0716-1460-0_19.
Full textConference papers on the topic "Whole genome sequences (WGS)"
Lange, I., C. Stein, J. Rödel, A. Knabe, F. Kipp, H. Proquitté, and K. Dawczynski. "Analyse eines S. aureus-Clusters in der Neonatologie mittels Whole Genome Sequencing (WGS)." In 29. Deutscher Kongress für Perinatale Medizin. Deutsche Gesellschaft für Perinatale Medizin (DGPM) – „Hinterm Horizont geht's weiter, zusammen sind wir stark“. Georg Thieme Verlag KG, 2019. http://dx.doi.org/10.1055/s-0039-3401202.
Full textGuro, P., V. Safronova, A. Sazanova, I. Kuznetsova, A. Belimov, V. Yakubov, E. Chirak, A. Afonin, E. Andronov, and I. Tikhonovich. "Rhizobial microsymbionts of the narrowly endemic Oxytropis species growing in Kamchatka possess a set of genes that are associated with T3SS and T6SS secretion systems and can affect the development of symbiosis." In 2nd International Scientific Conference "Plants and Microbes: the Future of Biotechnology". PLAMIC2020 Organizing committee, 2020. http://dx.doi.org/10.28983/plamic2020.099.
Full textGanapathiraju, M., D. Weisser, R. Rosenfeld, J. Carbonell, R. Reddy, and J. Klein-Seetharaman. "Comparative n-gram analysis of whole-genome protein sequences." In the second international conference. Morristown, NJ, USA: Association for Computational Linguistics, 2002. http://dx.doi.org/10.3115/1289189.1289259.
Full textKaptelova, V. V., A. S. Speranskaya, A. E. Samoilov, A. V. Valdokhina, V. P. Bulanenko, E. V. Korneenko, O. Y. Shipulina, and V. G. Akimkin. "MUTATIONS IN THE GENOMES OF SARS-COV-2 FROM CLINICAL SAMPLES OBTAINED IN LATE MARCH-EARLY APRIL FROM PATIENTS IN MOSCOW." In Molecular Diagnostics and Biosafety. Federal Budget Institute of Science 'Central Research Institute for Epidemiology', 2020. http://dx.doi.org/10.36233/978-5-9900432-9-9-147.
Full textO'hara, Patrick J., Frank A. Grant, A. Betty, J. Haldmen, and Mark J. Murray. "Structure of the Human Factor VII Gene." In XIth International Congress on Thrombosis and Haemostasis. Schattauer GmbH, 1987. http://dx.doi.org/10.1055/s-0038-1643786.
Full textWei Zhang, Erliang Zeng, Scott J. Emrich, Joshua Livermore, Dan Liu, and Stuart E. Jones. "Predicting bacterial functional traits from whole genome sequences using random forest." In 2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS). IEEE, 2013. http://dx.doi.org/10.1109/iccabs.2013.6629212.
Full textMartins, Wellington S., Juan del Cuvillo, Wenwu Cui, and Guang R. Gao. "Whole Genome Alignment using a Multithreaded Parallel Implementation." In Simpósio de Arquitetura de Computadores e Processamento de Alto Desempenho. Sociedade Brasileira de Computação, 2001. http://dx.doi.org/10.5753/sbac-pad.2001.22185.
Full textPavel, Ionut, Ina Iuliana Macovei, Simona Péter, Daniela Diculencu, Florin Rusu-Cordunean, and Bogdan Dragos Grigoriu. "Detection of first and second line drug resistance mutations from multi drug resistantmycobacterium tuberculosisstrains by Ion Torrent whole genome sequencing (WGS)." In ERS International Congress 2016 abstracts. European Respiratory Society, 2016. http://dx.doi.org/10.1183/13993003.congress-2016.pa1910.
Full textQian, Jiating, Mengjiao Li, Yifan Feng, Wenjuan Li, and Jie Li. "Genetic Epidemiology of Porcine Transmissible Gastroenteritis Virus Based on Whole Genome and S Gene Sequences." In 2021 IEEE 9th International Conference on Bioinformatics and Computational Biology (ICBCB). IEEE, 2021. http://dx.doi.org/10.1109/icbcb52223.2021.9459208.
Full textLi, X., S. Krishnamurthy, S. Kumar, S. Reddy, W. Woodward, J. Reuben, C. Hatzis, NT Ueno, M. Gerstein, and L. Pusztai. "Abstract P1-05-01: Landscape of somatic mutations in inflammatory breast cancer whole-genome sequences." In Abstracts: 2016 San Antonio Breast Cancer Symposium; December 6-10, 2016; San Antonio, Texas. American Association for Cancer Research, 2017. http://dx.doi.org/10.1158/1538-7445.sabcs16-p1-05-01.
Full textReports on the topic "Whole genome sequences (WGS)"
Gur, Amit, Edward Buckler, Joseph Burger, Yaakov Tadmor, and Iftach Klapp. Characterization of genetic variation and yield heterosis in Cucumis melo. United States Department of Agriculture, January 2016. http://dx.doi.org/10.32747/2016.7600047.bard.
Full textSherman, Amir, Rebecca Grumet, Ron Ophir, Nurit Katzir, and Yiqun Weng. Whole genome approach for genetic analysis in cucumber: Fruit size as a test case. United States Department of Agriculture, December 2013. http://dx.doi.org/10.32747/2013.7594399.bard.
Full textWeller, Joel I., Harris A. Lewin, and Micha Ron. Determination of Allele Frequencies for Quantitative Trait Loci in Commercial Animal Populations. United States Department of Agriculture, February 2005. http://dx.doi.org/10.32747/2005.7586473.bard.
Full textFluhr, Robert, and Volker Brendel. Harnessing the genetic diversity engendered by alternative gene splicing. United States Department of Agriculture, December 2005. http://dx.doi.org/10.32747/2005.7696517.bard.
Full textJorgensen, Frieda, Andre Charlett, Craig Swift, Anais Painset, and Nicolae Corcionivoschi. A survey of the levels of Campylobacter spp. contamination and prevalence of selected antimicrobial resistance determinants in fresh whole UK-produced chilled chickens at retail sale (non-major retailers). Food Standards Agency, June 2021. http://dx.doi.org/10.46756/sci.fsa.xls618.
Full textVakharia, Vikram, Shoshana Arad, Yonathan Zohar, Yacob Weinstein, Shamila Yusuff, and Arun Ammayappan. Development of Fish Edible Vaccines on the Yeast and Redmicroalgae Platforms. United States Department of Agriculture, February 2013. http://dx.doi.org/10.32747/2013.7699839.bard.
Full textLee, Richard, Moshe Bar-Joseph, K. S. Derrick, Aliza Vardi, Roland Brlansky, Yuval Eshdat, and Charles Powell. Production of Antibodies to Citrus Tristeza Virus in Transgenic Citrus. United States Department of Agriculture, September 1995. http://dx.doi.org/10.32747/1995.7613018.bard.
Full textNewton, Ronald, Joseph Riov, and John Cairney. Isolation and Functional Analysis of Drought-Induced Genes in Pinus. United States Department of Agriculture, September 1993. http://dx.doi.org/10.32747/1993.7568752.bard.
Full textJordan, Ramon L., Abed Gera, Hei-Ti Hsu, Andre Franck, and Gad Loebenstein. Detection and Diagnosis of Virus Diseases of Pelargonium. United States Department of Agriculture, July 1994. http://dx.doi.org/10.32747/1994.7568793.bard.
Full textRodriguez, Russell, and Stanley Freeman. Characterization of fungal symbiotic lifestyle expression in Colletotrichum and generating non-pathogenic mutants that confer disease resistance, drought tolerance, and growth enhancement to plant hosts. United States Department of Agriculture, February 2005. http://dx.doi.org/10.32747/2005.7587215.bard.
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