Journal articles on the topic 'Transcriptomic analysi'
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Ochsner, Scott A., Christopher M. Watkins, Apollo McOwiti, Xueping Xu, Yolanda F. Darlington, Michael D. Dehart, Austin J. Cooney, David L. Steffen, Lauren B. Becnel, and Neil J. McKenna. "Transcriptomine, a web resource for nuclear receptor signaling transcriptomes." Physiological Genomics 44, no. 17 (September 1, 2012): 853–63. http://dx.doi.org/10.1152/physiolgenomics.00033.2012.
Full textCallaway, Edward M., Hong-Wei Dong, Joseph R. Ecker, Michael J. Hawrylycz, Z. Josh Huang, Ed S. Lein, John Ngai, et al. "A multimodal cell census and atlas of the mammalian primary motor cortex." Nature 598, no. 7879 (October 6, 2021): 86–102. http://dx.doi.org/10.1038/s41586-021-03950-0.
Full textNesterenko, Maksim, and Aleksei Miroliubov. "From head to rootlet: comparative transcriptomic analysis of a rhizocephalan barnacle Peltogaster reticulata (Crustacea: Rhizocephala)." F1000Research 11 (May 27, 2022): 583. http://dx.doi.org/10.12688/f1000research.110492.1.
Full textNesterenko, Maksim, and Aleksei Miroliubov. "From head to rootlet: comparative transcriptomic analysis of a rhizocephalan barnacle Peltogaster reticulata (Crustacea: Rhizocephala)." F1000Research 11 (January 9, 2023): 583. http://dx.doi.org/10.12688/f1000research.110492.2.
Full textChen, Wanze, Orane Guillaume-Gentil, Pernille Yde Rainer, Christoph G. Gäbelein, Wouter Saelens, Vincent Gardeux, Amanda Klaeger, et al. "Live-seq enables temporal transcriptomic recording of single cells." Nature 608, no. 7924 (August 17, 2022): 733–40. http://dx.doi.org/10.1038/s41586-022-05046-9.
Full textGui, Yu, Xiujing He, Jing Yu, and Jing Jing. "Artificial Intelligence-Assisted Transcriptomic Analysis to Advance Cancer Immunotherapy." Journal of Clinical Medicine 12, no. 4 (February 6, 2023): 1279. http://dx.doi.org/10.3390/jcm12041279.
Full textCheon, Seongmin, Sung-Gwon Lee, Hyun-Hee Hong, Hyun-Gwan Lee, Kwang Young Kim, and Chungoo Park. "A guide to phylotranscriptomic analysis for phycologists." Algae 36, no. 4 (December 15, 2021): 333–40. http://dx.doi.org/10.4490/algae.2021.36.12.7.
Full textChaudhuri, Roy R., Lu Yu, Alpa Kanji, Timothy T. Perkins, Paul P. Gardner, Jyoti Choudhary, Duncan J. Maskell, and Andrew J. Grant. "Quantitative RNA-seq analysis of the Campylobacter jejuni transcriptome." Microbiology 157, no. 10 (October 1, 2011): 2922–32. http://dx.doi.org/10.1099/mic.0.050278-0.
Full textOrtiz, Randy, Priyanka Gera, Christopher Rivera, and Juan C. Santos. "Pincho: A Modular Approach to High Quality De Novo Transcriptomics." Genes 12, no. 7 (June 22, 2021): 953. http://dx.doi.org/10.3390/genes12070953.
Full textMacrander, Jason, Jyothirmayi Panda, Daniel Janies, Marymegan Daly, and Adam M. Reitzel. "Venomix: a simple bioinformatic pipeline for identifying and characterizing toxin gene candidates from transcriptomic data." PeerJ 6 (July 31, 2018): e5361. http://dx.doi.org/10.7717/peerj.5361.
Full textUdaondo, Zulema, Kanchana Sittikankaew, Tanaporn Uengwetwanit, Thidathip Wongsurawat, Chutima Sonthirod, Piroon Jenjaroenpun, Wirulda Pootakham, Nitsara Karoonuthaisiri, and Intawat Nookaew. "Comparative Analysis of PacBio and Oxford Nanopore Sequencing Technologies for Transcriptomic Landscape Identification of Penaeus monodon." Life 11, no. 8 (August 23, 2021): 862. http://dx.doi.org/10.3390/life11080862.
Full textHerrera-Uribe, Juber, Kristen A. Byrne, Haibo Liu, Sage Becker, Crystal L. Loving, and Christopher K. Tuggle. "The transcriptional landscape of porcine peripheral blood immune cells." Journal of Immunology 204, no. 1_Supplement (May 1, 2020): 92.18. http://dx.doi.org/10.4049/jimmunol.204.supp.92.18.
Full textGross, Joshua B., Dennis A. Sun, Brian M. Carlson, Sivan Brodo-Abo, and Meredith E. Protas. "Developmental Transcriptomic Analysis of the Cave-Dwelling Crustacean, Asellus aquaticus." Genes 11, no. 1 (December 29, 2019): 42. http://dx.doi.org/10.3390/genes11010042.
Full textUngar, B., M. Yavzori, E. Fudim, O. Picard, U. Kopylov, R. Eliakim, D. Shouval, et al. "P032 Host transcriptome signatures in human fecal-washes predict histological remission in IBD patients." Journal of Crohn's and Colitis 16, Supplement_1 (January 1, 2022): i152—i153. http://dx.doi.org/10.1093/ecco-jcc/jjab232.161.
Full textDovrou, Aikaterini, Ekaterini Bei, Stelios Sfakianakis, Kostas Marias, Nickolas Papanikolaou, and Michalis Zervakis. "Synergies of Radiomics and Transcriptomics in Lung Cancer Diagnosis: A Pilot Study." Diagnostics 13, no. 4 (February 15, 2023): 738. http://dx.doi.org/10.3390/diagnostics13040738.
Full textKrüger, Manuela, Oushadee A. J. Abeyawardana, Claudia Krüger, Miloslav Juříček, and Helena Štorchová. "Differentially Expressed Genes Shared by Two Distinct Cytoplasmic Male Sterility (CMS) Types of Silene vulgaris Suggest the Importance of Oxidative Stress in Pollen Abortion." Cells 9, no. 12 (December 16, 2020): 2700. http://dx.doi.org/10.3390/cells9122700.
Full textWang, Changli, Lijun Chen, Yaobin Chen, Wenwen Jia, Xunhui Cai, Yufeng Liu, Fenghu Ji, et al. "Abnormal global alternative RNA splicing in COVID-19 patients." PLOS Genetics 18, no. 4 (April 14, 2022): e1010137. http://dx.doi.org/10.1371/journal.pgen.1010137.
Full textMattei, Daniele, Andranik Ivanov, Marc van Oostrum, Stanislav Pantelyushin, Juliet Richetto, Flavia Mueller, Michal Beffinger, et al. "Enzymatic Dissociation Induces Transcriptional and Proteotype Bias in Brain Cell Populations." International Journal of Molecular Sciences 21, no. 21 (October 26, 2020): 7944. http://dx.doi.org/10.3390/ijms21217944.
Full textBarral-Arca, Ruth, Alberto Gómez-Carballa, Miriam Cebey-López, Xabier Bello, Federico Martinón-Torres, and Antonio Salas. "A Meta-Analysis of Multiple Whole Blood Gene Expression Data Unveils a Diagnostic Host-Response Transcript Signature for Respiratory Syncytial Virus." International Journal of Molecular Sciences 21, no. 5 (March 6, 2020): 1831. http://dx.doi.org/10.3390/ijms21051831.
Full textAshwin, Helen, Karin Seifert, Sarah Forrester, Najmeeyah Brown, Sandy MacDonald, Sally James, Dimitris Lagos, et al. "Tissue and host species-specific transcriptional changes in models of experimental visceral leishmaniasis." Wellcome Open Research 3 (October 29, 2018): 135. http://dx.doi.org/10.12688/wellcomeopenres.14867.1.
Full textAshwin, Helen, Karin Seifert, Sarah Forrester, Najmeeyah Brown, Sandy MacDonald, Sally James, Dimitris Lagos, et al. "Tissue and host species-specific transcriptional changes in models of experimental visceral leishmaniasis." Wellcome Open Research 3 (January 2, 2019): 135. http://dx.doi.org/10.12688/wellcomeopenres.14867.2.
Full textAhn, Antonio, Euan J. Rodger, Jyoti Motwani, Gregory Gimenez, Peter A. Stockwell, Matthew Parry, Peter Hersey, Aniruddha Chatterjee, and Michael R. Eccles. "Transcriptional Reprogramming and Constitutive PD-L1 Expression in Melanoma Are Associated with Dedifferentiation and Activation of Interferon and Tumour Necrosis Factor Signalling Pathways." Cancers 13, no. 17 (August 24, 2021): 4250. http://dx.doi.org/10.3390/cancers13174250.
Full textDarden, Dijoia B., Gabriela L. Ghita, Zhongkai Wang, Julie A. Stortz, Maria-Cecilia Lopez, Michael C. Cox, Russell B. Hawkins, et al. "Chronic Critical Illness Elicits a Unique Circulating Leukocyte Transcriptome in Sepsis Survivors." Journal of Clinical Medicine 10, no. 15 (July 21, 2021): 3211. http://dx.doi.org/10.3390/jcm10153211.
Full textLondin, Eric R., Eleftheria Hatzimichael, Phillipe Loher, Leonard C. Edelstein, Chad Shaw, Kathleen Delgrosso, Paolo M. Fortina, Paul F. Bray, Steven E. McKenzie, and Isidore Rigoutsos. "Towards a Reference Human Platelet Transcriptome: Evaluation Of Inter-Individual Correlations and Its Relationship With a Platelet Proteome." Blood 122, no. 21 (November 15, 2013): 2297. http://dx.doi.org/10.1182/blood.v122.21.2297.2297.
Full textSun, Mingwei, Yilian Zhao, Xiaobin Shao, Jintao Ge, Xueyan Tang, Pengbo Zhu, Jiangying Wang, and Tongli Zhao. "EST–SSR Marker Development and Full-Length Transcriptome Sequence Analysis of Tiger Lily (Lilium lancifolium Thunb)." Applied Bionics and Biomechanics 2022 (January 28, 2022): 1–9. http://dx.doi.org/10.1155/2022/7641048.
Full textParmar, Sourabh. "Transcriptomics Analysis using Galaxy and other Online Servers for Rheumatoid Arthritis." International Journal for Research in Applied Science and Engineering Technology 9, no. VII (July 10, 2021): 459–66. http://dx.doi.org/10.22214/ijraset.2021.36331.
Full textWei, Fu-Jin, Saneyoshi Ueno, Tokuko Ujino-Ihara, Maki Saito, Yoshihiko Tsumura, Yuumi Higuchi, Satoko Hirayama, Junji Iwai, Tetsuji Hakamata, and Yoshinari Moriguchi. "Construction of a reference transcriptome for the analysis of male sterility in sugi (Cryptomeria japonica D. Don) focusing on MALE STERILITY 1 (MS1)." PLOS ONE 16, no. 2 (February 25, 2021): e0247180. http://dx.doi.org/10.1371/journal.pone.0247180.
Full textBrenner, Eric, Gayatri R. Tiwari, Manav Kapoor, Yunlong Liu, Amy Brock, and R. Dayne Mayfield. "Single cell transcriptome profiling of the human alcohol-dependent brain." Human Molecular Genetics 29, no. 7 (March 6, 2020): 1144–53. http://dx.doi.org/10.1093/hmg/ddaa038.
Full textSalazar, Juan Alfonso, Cristian Vergara-Pulgar, Claudia Jorquera, Patricio Zapata, David Ruiz, Pedro Martínez-Gómez, Rodrigo Infante, and Claudio Meneses. "De Novo Transcriptome Sequencing in Kiwifruit (Actinidia chinensis var. deliciosa (A Chev) Liang et Ferguson) and Development of Tissue-Specific Transcriptomic Resources." Agronomy 11, no. 5 (May 7, 2021): 919. http://dx.doi.org/10.3390/agronomy11050919.
Full textThompson, Ammon, Michael R. May, Brian R. Moore, and Artyom Kopp. "A hierarchical Bayesian mixture model for inferring the expression state of genes in transcriptomes." Proceedings of the National Academy of Sciences 117, no. 32 (July 24, 2020): 19339–46. http://dx.doi.org/10.1073/pnas.1919748117.
Full textXi, Dandan, Xiaofeng Li, Changwei Zhang, Lu Gao, Yuying Zhu, Shiwei Wei, Ying Li, Mingmin Jiang, Hongfang Zhu, and Zhaohui Zhang. "The Combined Analysis of Transcriptome and Metabolome Provides Insights into Purple Leaves in Eruca vesicaria subsp. sativa." Agronomy 12, no. 9 (August 27, 2022): 2046. http://dx.doi.org/10.3390/agronomy12092046.
Full textChebbo, Mohamad, Said Assou, Veronique Pantesco, Catherine Duez, Marie C. Alessi, Pascal Chanez, and Delphine Gras. "Platelets Purification Is a Crucial Step for Transcriptomic Analysis." International Journal of Molecular Sciences 23, no. 6 (March 13, 2022): 3100. http://dx.doi.org/10.3390/ijms23063100.
Full textSastry, Anand V., Alyssa Hu, David Heckmann, Saugat Poudel, Erol Kavvas, and Bernhard O. Palsson. "Independent component analysis recovers consistent regulatory signals from disparate datasets." PLOS Computational Biology 17, no. 2 (February 2, 2021): e1008647. http://dx.doi.org/10.1371/journal.pcbi.1008647.
Full textLi, Mengyao, Mohammad A. K. Azad, Philip E. Thompson, Kade D. Roberts, Tony Velkov, Yan Zhu, and Jian Li. "Transcriptomic Responses to Polymyxin B and Analogues in Human Kidney Tubular Cells." Antibiotics 12, no. 2 (February 20, 2023): 415. http://dx.doi.org/10.3390/antibiotics12020415.
Full textBeisser, Daniela, Nadine Graupner, Christina Bock, Sabina Wodniok, Lars Grossmann, Matthijs Vos, Bernd Sures, Sven Rahmann, and Jens Boenigk. "Comprehensive transcriptome analysis provides new insights into nutritional strategies and phylogenetic relationships of chrysophytes." PeerJ 5 (January 10, 2017): e2832. http://dx.doi.org/10.7717/peerj.2832.
Full textWang, Xinjun, Zhe Sun, Yanfu Zhang, Zhongli Xu, Hongyi Xin, Heng Huang, Richard H. Duerr, Kong Chen, Ying Ding, and Wei Chen. "BREM-SC: a bayesian random effects mixture model for joint clustering single cell multi-omics data." Nucleic Acids Research 48, no. 11 (May 7, 2020): 5814–24. http://dx.doi.org/10.1093/nar/gkaa314.
Full textKakuk, Balázs, András Attila Kiss, Gábor Torma, Zsolt Csabai, István Prazsák, Máté Mizik, Klára Megyeri, Dóra Tombácz, and Zsolt Boldogkői. "Nanopore Assay Reveals Cell-Type-Dependent Gene Expression of Vesicular Stomatitis Indiana Virus and Differential Host Cell Response." Pathogens 10, no. 9 (September 15, 2021): 1196. http://dx.doi.org/10.3390/pathogens10091196.
Full textVijayakumar, Periyasamy, Sanniyasi Bakyaraj, Arunasalam Singaravadivelan, Thangavelu Vasanthakumar, and Ramalingam Suresh. "Meta-analysis of mammary RNA seq datasets reveals the molecular understanding of bovine lactation biology." Genome 62, no. 7 (July 2019): 489–501. http://dx.doi.org/10.1139/gen-2018-0144.
Full textCheng, Xuanjin, Junran Yan, Yongxing Liu, Jiahe Wang, and Stefan Taubert. "eVITTA: a web-based visualization and inference toolbox for transcriptome analysis." Nucleic Acids Research 49, W1 (May 21, 2021): W207—W215. http://dx.doi.org/10.1093/nar/gkab366.
Full textRychel, Kevin, Katherine Decker, Anand V. Sastry, Patrick V. Phaneuf, Saugat Poudel, and Bernhard O. Palsson. "iModulonDB: a knowledgebase of microbial transcriptional regulation derived from machine learning." Nucleic Acids Research 49, no. D1 (October 12, 2020): D112—D120. http://dx.doi.org/10.1093/nar/gkaa810.
Full textSoula, Anaïs, Mélissa Valere, María-José López-González, Vicky Ury-Thiery, Alexis Groppi, Marc Landry, Macha Nikolski, and Alexandre Favereaux. "Small RNA-Seq reveals novel miRNAs shaping the transcriptomic identity of rat brain structures." Life Science Alliance 1, no. 5 (October 2018): e201800018. http://dx.doi.org/10.26508/lsa.201800018.
Full textJeon, Hyeongseon, Juan Xie, Yeseul Jeon, Kyeong Joo Jung, Arkobrato Gupta, Won Chang, and Dongjun Chung. "Statistical Power Analysis for Designing Bulk, Single-Cell, and Spatial Transcriptomics Experiments: Review, Tutorial, and Perspectives." Biomolecules 13, no. 2 (January 24, 2023): 221. http://dx.doi.org/10.3390/biom13020221.
Full textArmstrong, Eric J., and Jonathon H. Stillman. "Construction and Characterization of Two Novel Transcriptome Assemblies in the Congeneric Porcelain Crabs Petrolisthes cinctipes and P. manimaculis." Integrative and Comparative Biology 56, no. 6 (July 3, 2016): 1092–102. http://dx.doi.org/10.1093/icb/icw043.
Full textVan Etten, Julia, Alexander Shumaker, Tali Mass, Hollie M. Putnam, and Debashish Bhattacharya. "Transcriptome analysis provides a blueprint of coral egg and sperm functions." PeerJ 8 (August 18, 2020): e9739. http://dx.doi.org/10.7717/peerj.9739.
Full textZubcevic, Jasenka, Ashley Baker, and Christopher J. Martyniuk. "Transcriptional networks in rodent models support a role for gut-brain communication in neurogenic hypertension: a review of the evidence." Physiological Genomics 49, no. 7 (July 1, 2017): 327–38. http://dx.doi.org/10.1152/physiolgenomics.00010.2017.
Full textHaroon, Yu-Xin Li, Chen-Xu Ye, Jian Su, Ghulam Nabi, Xiao-Hong Su, and Lian-Xi Xing. "De Novo Transcriptome Assembly and Analysis of Longevity Genes Using Subterranean Termite (Reticulitermes chinensis) Castes." International Journal of Molecular Sciences 23, no. 21 (November 7, 2022): 13660. http://dx.doi.org/10.3390/ijms232113660.
Full textKoglin, Sven, Daronja Trense, Michael Wink, Hedwig Sauer-Gürth, and Dieter Thomas Tietze. "Characterization of a de novo assembled transcriptome of the Common Blackbird (Turdus merula)." PeerJ 5 (December 13, 2017): e4045. http://dx.doi.org/10.7717/peerj.4045.
Full textLiu, Dandan, Zhengxi Li, and Maolin Hou. "Comparison of Transcriptome Responses between Sogatella furcifera Females That Acquired Southern Rice Black-Streaked Dwarf Virus and Not." Insects 13, no. 2 (February 9, 2022): 182. http://dx.doi.org/10.3390/insects13020182.
Full textGyoneva, Stefka, Raghavendra Hosur, David Gosselin, Baohong Zhang, Zhengyu Ouyang, Anne C. Cotleur, Michael Peterson, et al. "Cx3cr1-deficient microglia exhibit a premature aging transcriptome." Life Science Alliance 2, no. 6 (December 2019): e201900453. http://dx.doi.org/10.26508/lsa.201900453.
Full textMorcillo, Rafael, Juan Vílchez, Song Zhang, Richa Kaushal, Danxia He, Hailing Zi, Renyi Liu, Karsten Niehaus, Avtar Handa, and Huiming Zhang. "Plant Transcriptome Reprograming and Bacterial Extracellular Metabolites Underlying Tomato Drought Resistance Triggered by a Beneficial Soil Bacteria." Metabolites 11, no. 6 (June 9, 2021): 369. http://dx.doi.org/10.3390/metabo11060369.
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