Journal articles on the topic 'Transcription Start Sites'
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Stamatoyannopoulos, John A. "Illuminating eukaryotic transcription start sites." Nature Methods 7, no. 7 (July 2010): 501–3. http://dx.doi.org/10.1038/nmeth0710-501.
Full textNielsen, Mathias, Ryan Ard, Xueyuan Leng, Maxim Ivanov, Peter Kindgren, Vicent Pelechano, and Sebastian Marquardt. "Transcription-driven chromatin repression of Intragenic transcription start sites." PLOS Genetics 15, no. 2 (February 1, 2019): e1007969. http://dx.doi.org/10.1371/journal.pgen.1007969.
Full textLi, W. Z., and F. Sherman. "Two types of TATA elements for the CYC1 gene of the yeast Saccharomyces cerevisiae." Molecular and Cellular Biology 11, no. 2 (February 1991): 666–76. http://dx.doi.org/10.1128/mcb.11.2.666-676.1991.
Full textLi, W. Z., and F. Sherman. "Two types of TATA elements for the CYC1 gene of the yeast Saccharomyces cerevisiae." Molecular and Cellular Biology 11, no. 2 (February 1991): 666–76. http://dx.doi.org/10.1128/mcb.11.2.666.
Full textFrith, M. C. "Evolutionary turnover of mammalian transcription start sites." Genome Research 16, no. 6 (June 1, 2006): 713–22. http://dx.doi.org/10.1101/gr.5031006.
Full textGordon, J. J., M. W. Towsey, J. M. Hogan, S. A. Mathews, and P. Timms. "Improved prediction of bacterial transcription start sites." Bioinformatics 22, no. 2 (November 15, 2005): 142–48. http://dx.doi.org/10.1093/bioinformatics/bti771.
Full textDrysdale, Melissa, Agathe Bourgogne, and Theresa M. Koehler. "Transcriptional Analysis of the Bacillus anthracis Capsule Regulators." Journal of Bacteriology 187, no. 15 (August 1, 2005): 5108–14. http://dx.doi.org/10.1128/jb.187.15.5108-5114.2005.
Full textMembrillo-Hernández, Jorge, and E. C. C. Lin. "Regulation of Expression of the adhE Gene, Encoding Ethanol Oxidoreductase in Escherichia coli: Transcription from a Downstream Promoter and Regulation by Fnr and RpoS." Journal of Bacteriology 181, no. 24 (December 15, 1999): 7571–79. http://dx.doi.org/10.1128/jb.181.24.7571-7579.1999.
Full textHowcroft, T. Kevin, Aparna Raval, Jocelyn D. Weissman, Anne Gegonne, and Dinah S. Singer. "Distinct Transcriptional Pathways Regulate Basal and Activated Major Histocompatibility Complex Class I Expression." Molecular and Cellular Biology 23, no. 10 (May 15, 2003): 3377–91. http://dx.doi.org/10.1128/mcb.23.10.3377-3391.2003.
Full textIshihara, Satoru, Yohei Sasagawa, Takeru Kameda, Hayato Yamashita, Mana Umeda, Naoe Kotomura, Masayuki Abe, Yohei Shimono, and Itoshi Nikaido. "Local states of chromatin compaction at transcription start sites control transcription levels." Nucleic Acids Research 49, no. 14 (July 7, 2021): 8007–23. http://dx.doi.org/10.1093/nar/gkab587.
Full textMendoza-Vargas, Alfredo, Leticia Olvera, Maricela Olvera, Ricardo Grande, Leticia Vega-Alvarado, Blanca Taboada, Verónica Jimenez-Jacinto, et al. "Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli." PLoS ONE 4, no. 10 (October 19, 2009): e7526. http://dx.doi.org/10.1371/journal.pone.0007526.
Full textHolwerda, Sjoerd Johannes Bastiaan, and Wouter de Laat. "CTCF: the protein, the binding partners, the binding sites and their chromatin loops." Philosophical Transactions of the Royal Society B: Biological Sciences 368, no. 1620 (June 19, 2013): 20120369. http://dx.doi.org/10.1098/rstb.2012.0369.
Full textKaebernick, Melanie, Elke Dittmann, Thomas B�rner, and Brett A. Neilan. "Multiple Alternate Transcripts Direct the Biosynthesis of Microcystin, a Cyanobacterial." Applied and Environmental Microbiology 68, no. 2 (February 2002): 449–55. http://dx.doi.org/10.1128/aem.68.2.449-455.2002.
Full textBondar, Eugeniya I., Maxim E. Troukhan, Konstantin V. Krutovsky, and Tatiana V. Tatarinova. "Genome-Wide Prediction of Transcription Start Sites in Conifers." International Journal of Molecular Sciences 23, no. 3 (February 3, 2022): 1735. http://dx.doi.org/10.3390/ijms23031735.
Full textLizio, Marina, Ruslan Deviatiiarov, Hiroki Nagai, Laura Galan, Erik Arner, Masayoshi Itoh, Timo Lassmann, et al. "Systematic analysis of transcription start sites in avian development." PLOS Biology 15, no. 9 (September 5, 2017): e2002887. http://dx.doi.org/10.1371/journal.pbio.2002887.
Full textWakaguri, H., R. Yamashita, Y. Suzuki, S. Sugano, and K. Nakai. "DBTSS: database of transcription start sites, progress report 2008." Nucleic Acids Research 36, Database (December 23, 2007): D97—D101. http://dx.doi.org/10.1093/nar/gkm901.
Full textReddy, D. Ashok, and Chanchal K. Mitra. "Comparative Analysis of Transcription Start Sites Using Mutual Information." Genomics, Proteomics & Bioinformatics 4, no. 3 (2006): 189–95. http://dx.doi.org/10.1016/s1672-0229(06)60032-6.
Full textPavé-Preux, M., M. Aggerbeck, C. Veyssier, B. Bousquet-Lemercier, J. Hanoune, and R. Barouki. "Hormonal discrimination among transcription start sites of aspartate aminotransferase." Journal of Biological Chemistry 265, no. 8 (March 1990): 4444–48. http://dx.doi.org/10.1016/s0021-9258(19)39584-5.
Full textTOWSEY, MICHAEL W., JAMES J. GORDON, and JAMES M. HOGAN. "THE PREDICTION OF BACTERIAL TRANSCRIPTION START SITES USING SVMS." International Journal of Neural Systems 16, no. 05 (October 2006): 363–70. http://dx.doi.org/10.1142/s0129065706000767.
Full textTaft, Ryan J., Evgeny A. Glazov, Nicole Cloonan, Cas Simons, Stuart Stephen, Geoffrey J. Faulkner, Timo Lassmann, et al. "Tiny RNAs associated with transcription start sites in animals." Nature Genetics 41, no. 5 (April 19, 2009): 572–78. http://dx.doi.org/10.1038/ng.312.
Full textFu, Ye, Guan-Zheng Luo, Kai Chen, Xin Deng, Miao Yu, Dali Han, Ziyang Hao, et al. "N6-Methyldeoxyadenosine Marks Active Transcription Start Sites in Chlamydomonas." Cell 161, no. 4 (May 2015): 879–92. http://dx.doi.org/10.1016/j.cell.2015.04.010.
Full textChang, D. D., and D. A. Clayton. "Precise assignment of the heavy-strand promoter of mouse mitochondrial DNA: cognate start sites are not required for transcriptional initiation." Molecular and Cellular Biology 6, no. 9 (September 1986): 3262–67. http://dx.doi.org/10.1128/mcb.6.9.3262-3267.1986.
Full textChang, D. D., and D. A. Clayton. "Precise assignment of the heavy-strand promoter of mouse mitochondrial DNA: cognate start sites are not required for transcriptional initiation." Molecular and Cellular Biology 6, no. 9 (September 1986): 3262–67. http://dx.doi.org/10.1128/mcb.6.9.3262.
Full textGrichnik, J. M., B. A. French, and R. J. Schwartz. "The chicken skeletal alpha-actin gene promoter region exhibits partial dyad symmetry and a capacity to drive bidirectional transcription." Molecular and Cellular Biology 8, no. 11 (November 1988): 4587–97. http://dx.doi.org/10.1128/mcb.8.11.4587-4597.1988.
Full textGrichnik, J. M., B. A. French, and R. J. Schwartz. "The chicken skeletal alpha-actin gene promoter region exhibits partial dyad symmetry and a capacity to drive bidirectional transcription." Molecular and Cellular Biology 8, no. 11 (November 1988): 4587–97. http://dx.doi.org/10.1128/mcb.8.11.4587.
Full textGeng, Y., and L. F. Johnson. "Lack of an initiator element is responsible for multiple transcriptional initiation sites of the TATA-less mouse thymidylate synthase promoter." Molecular and Cellular Biology 13, no. 8 (August 1993): 4894–903. http://dx.doi.org/10.1128/mcb.13.8.4894-4903.1993.
Full textGeng, Y., and L. F. Johnson. "Lack of an initiator element is responsible for multiple transcriptional initiation sites of the TATA-less mouse thymidylate synthase promoter." Molecular and Cellular Biology 13, no. 8 (August 1993): 4894–903. http://dx.doi.org/10.1128/mcb.13.8.4894.
Full textNagai, Shigeki, Ralph E. Davis, Pierre Jean Mattei, Kyle Patrick Eagen, and Roger D. Kornberg. "Chromatin potentiates transcription." Proceedings of the National Academy of Sciences 114, no. 7 (January 30, 2017): 1536–41. http://dx.doi.org/10.1073/pnas.1620312114.
Full textHoshizaki, Johanna, and Marcus C. S. Lee. "Scientists on a RAMPAGE to find apicomplexan transcription start sites." Nature Reviews Microbiology 19, no. 8 (June 3, 2021): 483. http://dx.doi.org/10.1038/s41579-021-00587-8.
Full textQin, Zhiyi, Peter Stoilov, Xuegong Zhang, and Yi Xing. "SEASTAR: systematic evaluation of alternative transcription start sites in RNA." Nucleic Acids Research 46, no. 8 (March 13, 2018): e45-e45. http://dx.doi.org/10.1093/nar/gky053.
Full textSchroeder, Diane I., and Richard M. Myers. "Multiple transcription start sites for FOXP2 with varying cellular specificities." Gene 413, no. 1-2 (April 2008): 42–48. http://dx.doi.org/10.1016/j.gene.2008.01.015.
Full textXu, Chun-Fang, Melissa A. Brown, Julie A. Chambers, Beatrice Griffiths, Hans Nicolai, and Ellen Solomon. "Distinct transcription start sites generate two forms of BRCA1 mRNA." Human Molecular Genetics 4, no. 12 (1995): 2259–64. http://dx.doi.org/10.1093/hmg/4.12.2259.
Full textKalosakas, G., K. Ø. Rasmussen, A. R. Bishop, C. H. Choi, and A. Usheva. "Sequence-specific thermal fluctuations identify start sites for DNA transcription." Europhysics Letters (EPL) 68, no. 1 (October 2004): 127–33. http://dx.doi.org/10.1209/epl/i2004-10167-8.
Full textYamashita, R. "DBTSS: DataBase of Human Transcription Start Sites, progress report 2006." Nucleic Acids Research 34, no. 90001 (January 1, 2006): D86—D89. http://dx.doi.org/10.1093/nar/gkj129.
Full textSingh, Sandeep, Karol Szlachta, Arkadi Manukyan, Heather M. Raimer, Manikarna Dinda, Stefan Bekiranov, and Yuh-Hwa Wang. "Pausing sites of RNA polymerase II on actively transcribed genes are enriched in DNA double-stranded breaks." Journal of Biological Chemistry 295, no. 12 (February 6, 2020): 3990–4000. http://dx.doi.org/10.1074/jbc.ra119.011665.
Full textPark, J. H., and M. W. Taylor. "Analysis of signals controlling expression of the Chinese hamster ovary aprt gene." Molecular and Cellular Biology 8, no. 6 (June 1988): 2536–44. http://dx.doi.org/10.1128/mcb.8.6.2536-2544.1988.
Full textPark, J. H., and M. W. Taylor. "Analysis of signals controlling expression of the Chinese hamster ovary aprt gene." Molecular and Cellular Biology 8, no. 6 (June 1988): 2536–44. http://dx.doi.org/10.1128/mcb.8.6.2536.
Full textSierra, F., G. H. Fey, and Y. Guigoz. "T-kininogen gene expression is induced during aging." Molecular and Cellular Biology 9, no. 12 (December 1989): 5610–16. http://dx.doi.org/10.1128/mcb.9.12.5610-5616.1989.
Full textSierra, F., G. H. Fey, and Y. Guigoz. "T-kininogen gene expression is induced during aging." Molecular and Cellular Biology 9, no. 12 (December 1989): 5610–16. http://dx.doi.org/10.1128/mcb.9.12.5610.
Full textPerrin, David M., C. h. B. Chen, Yue Xu, Lori Pearson, and David S. Sigman. "Gene-Specific Transcription Inhibitors. Pentanucleotides Complementary to the Template Strand of Transcription Start Sites." Journal of the American Chemical Society 119, no. 24 (June 1997): 5746–47. http://dx.doi.org/10.1021/ja9634435.
Full textWilson, G. L., V. Najfeld, E. Kozlow, J. Menniger, D. Ward, and J. H. Kehrl. "Genomic structure and chromosomal mapping of the human CD22 gene." Journal of Immunology 150, no. 11 (June 1, 1993): 5013–24. http://dx.doi.org/10.4049/jimmunol.150.11.5013.
Full textSoldati, D., and J. C. Boothroyd. "A selector of transcription initiation in the protozoan parasite Toxoplasma gondii." Molecular and Cellular Biology 15, no. 1 (January 1995): 87–93. http://dx.doi.org/10.1128/mcb.15.1.87.
Full textLee, S., and D. S. Greenspan. "Transcriptional promoter of the human α1(V) collagen gene (COL5A1)." Biochemical Journal 310, no. 1 (August 15, 1995): 15–22. http://dx.doi.org/10.1042/bj3100015.
Full textMitchell, P. J., A. M. Carothers, J. H. Han, J. D. Harding, E. Kas, L. Venolia, and L. A. Chasin. "Multiple transcription start sites, DNase I-hypersensitive sites, and an opposite-strand exon in the 5' region of the CHO dhfr gene." Molecular and Cellular Biology 6, no. 2 (February 1986): 425–40. http://dx.doi.org/10.1128/mcb.6.2.425-440.1986.
Full textMitchell, P. J., A. M. Carothers, J. H. Han, J. D. Harding, E. Kas, L. Venolia, and L. A. Chasin. "Multiple transcription start sites, DNase I-hypersensitive sites, and an opposite-strand exon in the 5' region of the CHO dhfr gene." Molecular and Cellular Biology 6, no. 2 (February 1986): 425–40. http://dx.doi.org/10.1128/mcb.6.2.425.
Full textJones, Peter A. "Decoding the Chromatin Code." Blood 120, no. 21 (November 16, 2012): SCI—4—SCI—4. http://dx.doi.org/10.1182/blood.v120.21.sci-4.sci-4.
Full textBlake, M. C., R. C. Jambou, A. G. Swick, J. W. Kahn, and J. C. Azizkhan. "Transcriptional initiation is controlled by upstream GC-box interactions in a TATAA-less promoter." Molecular and Cellular Biology 10, no. 12 (December 1990): 6632–41. http://dx.doi.org/10.1128/mcb.10.12.6632-6641.1990.
Full textBlake, M. C., R. C. Jambou, A. G. Swick, J. W. Kahn, and J. C. Azizkhan. "Transcriptional initiation is controlled by upstream GC-box interactions in a TATAA-less promoter." Molecular and Cellular Biology 10, no. 12 (December 1990): 6632–41. http://dx.doi.org/10.1128/mcb.10.12.6632.
Full textHuang, Yongsheng, Kajal Sitwala, Joel Bronstein, Daniel Sanders, Monisha Dandekar, Cailin Collins, Gordon Robertson, et al. "Identification and characterization of Hoxa9 binding sites in hematopoietic cells." Blood 119, no. 2 (January 12, 2012): 388–98. http://dx.doi.org/10.1182/blood-2011-03-341081.
Full textHealy, A. M., T. L. Helser, and R. S. Zitomer. "Sequences required for transcriptional initiation of the Saccharomyces cerevisiae CYC7 genes." Molecular and Cellular Biology 7, no. 10 (October 1987): 3785–91. http://dx.doi.org/10.1128/mcb.7.10.3785-3791.1987.
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