Dissertations / Theses on the topic 'Spencer Gulf'

Located in the south-west region of Spencer Gulf, South Australia, a multi-million dollar aquaculture industry based on the ranching of southern bluefin tuna (Thunnus maccoyii) contributes significantly to the regional economy. The interaction between aquaculture activities and the environment is of significant interest to industry stakeholders, management authorities and the broader science community. No studies, to the best of my knowledge, have investigated the relationships between the hydrodynamics and biogeochemistry of the system and the ability of the benthic ecosystem to deal with the increased loads of organic material from aquaculture activities. This thesis uses a multi-disciplinary approach combined with modern statistical techniques to explore the linkages between hydrodynamics, sediment geochemistry, sedimentary nutrient cycling and the aquaculture industry. Modelling results have identified that swell entering the mouth of Spencer Gulf from directly south causes the greatest swell heights in the central tuna farming zone. Winds from the north-east through to south-east generate the greatest wind-wave heights in the central tuna farming zone. This is directly related to the available fetch. The energy contained in the locally generated wind waves was the same order of magnitude as that of the dissipated oceanic swells. Yet the incoming swell poses the greatest risk to aquaculture activities as the increased wave length causes swell energy to penetrate to the seafloor. The results of this work suggest that the sediment geochemistry is tightly coupled to both the hydrodynamic regime and the buildup of silt originating from aquaculture activities. In the more exposed regions of the tuna farming zone, periodic resuspension events caused by swell propagating into the area from the Southern Ocean, resuspend fine unconsolidated sediments into the lower 10 m of the water column. This material is then advected through the region by the residual (low-frequency) currents until it settles out in areas of lower energy. This process has created two distinct provinces within the region that can either be classified as depositional or erosional. The combined effect of wave action and tidal currents have generated a heterogeneous distribution of biogeochemical properties within the sediments. Denitrification rates were measured in these heterogeneous sediments using a novel technique based on Bayesian statistics to explicitly account for the spatial variability of the sediment biogeochemistry. The denitrification rates were found to be generally low, largely due to the lack of organic matter entering the sediments. However, adjacent to aquaculture activities, the high organic loads stimulate sedimentary denitrification, with rates reaching values of up to three orders of magnitude greater than the control sites. Denitrification efficiencies were high adjacent to the aquaculture activities, with up to 95% of the dissolved inorganic nitrogen produced from the breakdown of organic matter in the sediments being removed. Variability in the denitrification efficiencies was related to the textural characteristics of the sediments, with high efficiencies in finer sediments. It is proposed that this is due to the lower permeability of these sediments restricting the advective exchange of porewater nutrients.

Interest in the effect of fish farming practices on the marine environment has arisen because there is concern that the wastes that fish farms produce may be contributing to eutrophication in coastal areas and the problem of harmful algal blooms. The focus of this thesis is an examination of phytoplankton distribution and abundance in relation to tuna fish farms in Boston Bay and near-shore Spencer Gulf. This is the first study in South Australia to define the short-term biomass fluctuations of chlorophyll and in vivo fluorescence, identify phytoplankton species distribution and abundance, including two potentially toxic dinoflagellates, and describe patch distribution relative to tuna fish farms in Boston Bay and the near-shore waters of Spencer Gulf. An ecological interpretation of phytoplankton distribution and abundance is determined and shows that community composition was different in lower Spencer Gulf compared to Boston Bay and upper Spencer Gulf sites. Pico- and nanophytoplankton were often the most abundant organisms. Diatoms and gymnoids were most common. Season and currents predominantly influenced the distribution of phytoplankton in Boston Bay and Spencer Gulf. Individual species may be influenced by inputs from the fish farms. Chlorophyll levels were different between the Spencer Gulf and Boston Bay sites and no differences were recorded, using mean levels of chlorophyll, between tuna cages and controls. Chlorophyll levels were higher east of Boston Island in autumn of 1999. Chlorophyll levels appeared to show a slight increase between years. This may have been an anomalous natural variation and future research may investigate this in the long term. In addition, Principal Components Analysis (PCA) was used to investigate differences between treatments and the functional grouping model supported an ecological interpretation of the factors from the PCA. A total of 131 taxa of phytoplankton were identified in this study. The 14 dominant taxa were used in the PCA and of these, 9 were diatoms. Phytoplankton abundance was not different between tuna cages and controls. However, when examining individual species, Karenia mikimotoi was more prevalent at tuna cages, close to shore, east and west of Boston Island than at other sites. PCA showed how different species bloomed together and were seasonal. Karenia brevis and K. mikimotoi featured predominantly in the PCA with K. brevis the dominant organism during summer and autumn along with Gyrodinium spp. and smaller gymnoids. K. brevis blooms were most likely influenced by water temperatures and fixation of nitrogen from a Trichodesmium erythaeum bloom. K. mikimotoi bloomed bimodally and may be influenced by ammonia excreted from fish from the tuna farms but , on the other hand, may be limited by the high salinities of South Australian waters. Currents in the region distribute both organisms. The final aspect of this study assessed finer temporal and spatial sampling using directional transects around tuna cages and controls using in-vivo fluorescence and size fractionated chlorophyll. The chlorophyll a sampling showed little spatial variability within a site in the 1000 m2 that the sampling area covers but far greater temporal variability (days). In contrast, fluorescence `mapping' expands the window of variability both spatially (within a site) and temporally (along transects and between days). This has given a spatial definition, which is unavailable from a single point sample, and thereby leaves room for much greater interpretation. Small patches are evident from the fluorescence mapping where this is impossible to detect from the single point samples. Therefore, the fluorescence `mapping' and patch definition show that the trend is widespread (spatially) and quite persistent (temporally) around the fish farm area. Size fractionated chlorophyll samples provided further insight into phytoplankton dynamics in this study where diatoms were favored over dinoflagellates and were responsible for the larger fraction of chlorophyll found at the tuna cage one (TC1) site. We suggest that seasonal fluctuations, high nutrient input from the farm activities and turbulence may be responsible for the different chlorophyll/fluorescent structures found at TC1. Future research may look at the long-term regional impact on phytoplankton size structure, biomass and communities from fish farm activities. As a good part of this journey involved counting phytoplankton using the Utërmohl technique, a short paper, published in the Journal of Plankton Research, on reducing the settling time of this method, is presented in Appendix.

When species compete for resources, in a stable homogeneous environment, there are two possible outcomes. The first is that one species will out-compete the other and exclude it from the environment. This is known as the competitive exclusion principle. The second is that both species will manage to coexist. Coexistence can only occur if the species’ niches are differentiated such that interspecific competition is minimised, or eliminated. This outcome is known as resource partitioning. Two closely related Australian skink species of the Egernia genus, Egernia multiscutata and Egernia whitii, are abundant and sympatric on Wedge Island in South Australia’s Spencer Gulf. The species are morphologically very similar and appear to have very similar life histories and habitat requirements. Ostensibly, they would compete for limiting resources in this environment. This thesis is the first investigation into resource partitioning in this previously unstudied model organism. I report the results of multi-faceted investigations into the coexistence of the skinks, E. multiscutata and E. whitii on Wedge Island and the evidence for, and mechanisms of, any facultative resource partitioning between them. Study methods involved a transect survey of most of Wedge Island to determine the species’ distributions and any evidence for resource partitioning; a morphological comparison to investigate any potential competitive advantages of either species; a habitat choice experiment to establish retreat-site preferences in the absence of interspecific interference; and, a series of staged dyadic encounter experiments to investigate interspecific competitive interactions. Resource partitioning was evidenced by differential distributions of the species among substrates containing the elements required for permanent refuge shelters. This partitioning was not mediated by avoidance of particular substrates but by the presence of the opponent species, combined with attraction to suitable substrates. Asymmetries in some morphological characters were found to confer a potential competitive advantage to E. multiscutata in agonistic encounters with E. whitii. Both species were found to have the same refuge site preferences when interference competition was experimentally removed. This result was not concordant with observed resource partitioning in the field and suggests that the habitat choices of both species are modified by the presence of the opponent species. Analyses of staged dyadic encounter experiments showed that E. multiscutata was more likely to gain greater access to a contested habitat resource and more likely to exclude E. whitii from the resource than vice-versa. Nevertheless, the outcome of competitive interactions was not completely deterministic and there was some tolerance of co-habitation. E. multiscutata’s competitive advantage was attributable largely to its greater mass and head dimensions relative to snout to vent length. However, differential behavioural responses to the threat of larger opponent size also played an important part in resource partitioning between the species.

Includes bibliographical refe
xiv, 171 leaves : ill. (some col.) ; 30 cm.
Title page, contents and abstract only. The complete thesis in print form is available from the University Library.
Investigates the causes and consequences of a sudden dieback of intertidal and shallow subtidal seagrasses along 95 km of the eastern coast of Spencer Gulf, South Australia. Concludes with a conceptual model specific to shallow waters of Spencer Gulf where climatological extremes and geological processes are the main environmental factors influencing the processes of seagrass dieback and subsequent recolonisation and succession.
Thesis (Ph.D.)--Adelaide University, Dept. of Environmental Biology, 2001

Includes bibliographical refe
xiv, 171 leaves : ill. (some col.) ; 30 cm.
Investigates the causes and consequences of a sudden dieback of intertidal and shallow subtidal seagrasses along 95 km of the eastern coast of Spencer Gulf, South Australia. Concludes with a conceptual model specific to shallow waters of Spencer Gulf where climatological extremes and geological processes are the main environmental factors influencing the processes of seagrass dieback and subsequent recolonisation and succession.
Thesis (Ph.D.)--Adelaide University, Dept. of Environmental Biology, 2001

The population dynamics and fishery productivity of snapper, Chrysophrys auratus, in South Australia are strongly driven by inter-annual variation in recruitment. This variable recruitment produces the occasional strong year-class which, over a number of years, results in a cycle of increasing and then decreasing biomass. The aim of this study was to develop an understanding of the recruitment dynamics of snapper through a study of the reproductive biology of adults, as well as the biology and ecology of 0+ recruits. Field sampling was done through 2006 to 2008 in northern Spencer Gulf, the region that generally contributes the majority of South Australia’s snapper catch. The recruitment of 0+ snapper was measured from a study of inter-and intra- annual patterns of distribution and abundance. This was done using two independent trawl sampling regimes, one using a beam trawl and the other an otter trawl, at different times in the settlement season. There was considerable inter-annual variation in abundance of 0+ fish of up to two orders of magnitude and, in some years, almost no recruitment was observed. The spatial pattern of dispersion of recruits was clumped and consistent between years; one area, Western Shoal, always produced the highest catches indicating that it is an important nursery. The effects of the timing of spawning and water temperature on growth patterns of the 0+ snapper collected in the trawl sampling were studied to determine possible impacts on recruitment processes. Growth was studied from age/length regressions and by measuring the widths of microincrements in the sagittal otoliths. Sub-surface water temperature was also logged in the region. Growth rate varied inter- and intra-annually but was not limited by temperature in the pre-settlement period. However, post-settlement growth rate was significantly correlated with water temperature and fish exhibited a dramatic slowing of growth as temperature declined in autumn. Later spawned fish were considerably smaller than earlier spawned fish of the same age, which may have implications for post-settlement survival. The reproductive biology of snapper was studied to determine if annual variation in recruitment was related to egg production. Reproductive samples from northern Spencer Gulf were collected over three seasons (2005/06, 2006/07 and 2007/08) and were analysed macro- and microscopically. Spawning activity was determined by calculating estimates of spawning fraction and batch fecundities. The onset of spawning occurred in November but varied between years and corresponded with times when water temperature was between 18 and 20ºC. The length of the spawning season also differed between years. In each year the peak spawning activity occurred during December when fish spawned almost daily. Spawning frequency and relative batch size did not differ between the first two spawning seasons but, in the third season, batch size was considerably greater and spawning fraction lower. However, recruitment was considerably more variable than the annual differences in spawning output could explain. This indicates that mortality processes during the planktonic or early post-settlement period are important in the recruitment dynamics of snapper. The impact of water temperature, lunar cycle and tide on the timing and strength of recruitment was investigated. Pre-settlement duration, spawn dates and settlement dates were determined from the microstructure of the sagittal otoliths of 0+ snapper. The patterns of successful spawning and settlement were determined by back-calculating to the day on which individual recruits were spawned and settled. The frequency distributions of these dates were compared with water temperature, lunar periodicity and the temporal variation in spawning. There was considerable variation within a season in the timing and magnitude of successful recruitment. Strongest recruitment resulted from spawning during December and January on days when water temperatures were between 21 and 23ºC but spawning on days in this range did not necessarily result in recruitment. Pre-settlement duration was unaffected by water temperature. Some evidence of lunar periodicity was detected in both the spawn and settlement date frequencies. Importantly, the spawn date frequency distributions of successful 0+ recruits did not correspond with the measured spawning activity of adults as considerable portions of the spawning season in each year did not produce successful recruits. These results indicated that spawning output and water temperature cannot explain the observed magnitude in recruitment variation. Food availability for 0+ snapper has been implicated in their patterns of distribution and abundance in New Zealand and Japan. Stomach contents of 0+ snapper were described as an initial step in developing some understanding of the dispersion of 0+ recruits. In spite of their generalist feeding habit, in the area of highest abundance (Western Shoal), snapper took considerably more polychaetes than elsewhere in northern Spencer Gulf. If polychaetes are more abundant at Western Shoal, this could explain the higher density of 0+ snapper there but insufficient information was available on these animals for northern Spencer Gulf to address this hypothesis. Food availability and/or quality may influence the distribution of 0+ recruits. The multi-species collections from the beam trawls were described to develop an understanding of the spatial dispersion of recruits and their habitat associations. 0+ snapper co-occurred with an assemblage that was characterised by fish and invertebrate species that are associated with mud/soft bottom, but they never occurred with the assemblage of species associated with seagrass, even when recruitment was strongest. This association partly explains the observed distribution pattern, but not all areas of mud/soft bottom had 0+ recruits, even in strong recruitment years. In northern Spencer Gulf, seagrass areas could be excluded from future snapper recruitment surveys. The recruitment dynamics of snapper in northern Spencer Gulf were characterised by dramatic inter-annual variation but a consistent pattern of dispersion. 0+ snapper were concentrated in a few small areas in northern part of the study region. One of these areas, Western Shoal, appears to be very important as a nursery for snapper. Furthermore, the pattern of 0+ snapper dispersion was independent of recruitment strength. The potential magnitude of 0+ snapper recruitment, set by egg production, was altered by mortality during the early life history. Some of this mortality was related to temperature regimes at the time of spawning but this did not explain all the variation in the magnitude and timing of recruitment. Snapper spawning occurred at times with suitable temperature conditions but recruitment did not always result. This indicates the presence of other factor(s) that have substantial influences on mortality in the early life history.
http://proxy.library.adelaide.edu.au/login?url= http://library.adelaide.edu.au/cgi-bin/Pwebrecon.cgi?BBID=1374397
Thesis (Ph.D.) - University of Adelaide, School of Earth and Environmental Sciences, 2009

Includes glossary of notation and glossary of terms.
Bibliography: p. 297-311.
xvii, 330 p. : ill., maps ; 30 cm.
This thesis reports the development, testing and application of computer programs for simulating dispersion in coastal seas, with particular application to larvae of the western king prawn (Pencieus latisulcatus) in Spencer Gulf, South Australia.
Thesis (Ph.D.)--University of Adelaide, Dept. of Applied Mathematics, 1996?

Includes bibliographical references.
[320] leaves, [29] leaves of plates : ill. (some col., folded), maps ; 30 cm.
Title page, contents and abstract only. The complete thesis in print form is available from the University Library.
Thesis (Ph.D.)--University of Adelaide, Dept. of Geology and Geophysics, 1993