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Journal articles on the topic 'Site-Directed Mutagenesi'

Author: Grafiati

Published: 9 March 2023

Last updated: 10 March 2023

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1

Loke, Paxton, and Tiow-Suan Sim. "A Comparison of Three Site-Directed Mutagenesis Kits." Zeitschrift für Naturforschung C 56, no. 9-10 (October 1, 2001): 810–13. http://dx.doi.org/10.1515/znc-2001-9-1021.

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Abstract In this comparative study, three different mutagenesis kits, namely the MutaGene phagemid in vitro mutagenesis kit (Bio-Rad), the Transformerä Site-Directed mutagenesis kit (Clontech) and the Quik-change site-directed mutagenesis kit (Stratagene) were used for the mutagenesis of IPNS genes. However, a large difference in mutation efficiencies among these kits was encountered. Furthermore, these kits employ different strategies with its own individual strengths and weaknesses. Thus, a comparison among these three kits to evaluate their usefulness and improvements on the strategy adopted by the Quik-change site-directed mutagenesis kit, which was the kit of choice for our work, are presented for the benefit of research work.

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2

Carter, P. "Site-directed mutagenesis." Biochemical Journal 237, no. 1 (July 1, 1986): 1–7. http://dx.doi.org/10.1042/bj2370001.

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3

de Vries, G. E. "Site-directed mutagenesis." Trends in Plant Science 5, no. 7 (July 2000): 276. http://dx.doi.org/10.1016/s1360-1385(00)01699-x.

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4

Nybo, Kristie. "Site-directed mutagenesis: colony growth." BioTechniques 50, no. 2 (February 2011): 87–89. http://dx.doi.org/10.2144/000113609.

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5

Erb, Laurie, Richard Garrad, Yanjun Wang, Tom Quinn, John T. Turner, and Gary A. Weisman. "Site-directed Mutagenesis of P2UPurinoceptors." Journal of Biological Chemistry 270, no. 9 (March 3, 1995): 4185–88. http://dx.doi.org/10.1074/jbc.270.9.4185.

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6

Weiner, M. P., and G. L. Costa. "Rapid PCR site-directed mutagenesis." Genome Research 4, no. 3 (December 1, 1994): S131—S136. http://dx.doi.org/10.1101/gr.4.3.s131.

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7

MacDonald, Nicholas J., José M. P. Freije, Mary L. Stracke, Richard E. Manrow, and Patricia S. Steeg. "Site-directed Mutagenesis ofnm23-H1." Journal of Biological Chemistry 271, no. 41 (October 11, 1996): 25107–16. http://dx.doi.org/10.1074/jbc.271.41.25107.

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8

Carey, Michael F., Craig L. Peterson, and Stephen T. Smale. "PCR-Mediated Site-Directed Mutagenesis." Cold Spring Harbor Protocols 2013, no. 8 (August 2013): pdb.prot076505. http://dx.doi.org/10.1101/pdb.prot076505.

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9

Costa, Gina L., and Michael P. Weiner. "Rapid PCR Site-Directed Mutagenesis." Cold Spring Harbor Protocols 2006, no. 1 (January 1, 2006): pdb.prot4144. http://dx.doi.org/10.1101/pdb.prot4144.

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10

Imai, Kiyohiro, Kenzo Fushitani, Gentaro Miyazaki, Koichiro Ishimori, Teizo Kitagawa, Yoshinao Wada, Hideki Morimoto, Isao Morishima, Daniel T. b. Shih, and Jeremy Tame. "Site-directed mutagenesis in haemoglobin." Journal of Molecular Biology 218, no. 4 (April 1991): 769–78. http://dx.doi.org/10.1016/0022-2836(91)90265-8.

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11

Vallone, B., P. Vecchini, V. Cavalli, and M. Brunori. "Site-directed mutagenesis in hemoglobin." FEBS Letters 324, no. 2 (June 14, 1993): 117–22. http://dx.doi.org/10.1016/0014-5793(93)81375-a.

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12

Andag, Reiner, and Ekkehard Schütz. "General Method for Site-Directed Mutagenesis." BioTechniques 30, no. 3 (March 2001): 486–88. http://dx.doi.org/10.2144/01303bm04.

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13

DAHAI, Tang, Shoji ANDO, Yozo TAKASAKI, and Jutaro TADANO. "Site-Directed Mutagenesis of Restriction EndonucleaseHindIII." Bioscience, Biotechnology, and Biochemistry 63, no. 10 (January 1999): 1703–7. http://dx.doi.org/10.1271/bbb.63.1703.

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14

Nadin-Davis, Susan A., and Shirley C. Chang. "Site-Directed Mutagenesis of Large Plasmids." BioTechniques 25, no. 6 (December 1998): 1014–19. http://dx.doi.org/10.2144/98256st04.

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15

Richardson, Richard T., and Michael G. O'Rand. "Site-directed Mutagenesis of Rabbit Proacrosin." Journal of Biological Chemistry 271, no. 39 (September 27, 1996): 24069–74. http://dx.doi.org/10.1074/jbc.271.39.24069.

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16

Schildkraut, Ezra, and Peichung Hsieh. "Site-Directed Mutagenesis by Gibson Assembly." Genetic Engineering & Biotechnology News 33, no. 4 (February 15, 2013): 18–19. http://dx.doi.org/10.1089/gen.33.4.08.

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17

Abe, Ikuro, Yukie Sano, Yusuke Takahashi, and Hiroshi Noguchi. "Site-directed Mutagenesis of Benzalacetone Synthase." Journal of Biological Chemistry 278, no. 27 (April 30, 2003): 25218–26. http://dx.doi.org/10.1074/jbc.m303276200.

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18

Okamoto, Yasuo, Silvia Vaena de Avalos, and Yusuf A. Hannun. "Functional Analysis ofISC1by Site-Directed Mutagenesis†." Biochemistry 42, no. 25 (July 2003): 7855–62. http://dx.doi.org/10.1021/bi0341354.

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19

Amerik, Alexander Yu, Vladimir K. Antonov, Alexander E. Gorbalenya, Svetlana A. Kotova, Tatyana V. Rotanova, and Elena V. Shimbarevich. "Site-directed mutagenesis of La protease." FEBS Letters 287, no. 1-2 (August 5, 1991): 211–14. http://dx.doi.org/10.1016/0014-5793(91)80053-6.

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20

Cavallius, Jens, and William C. Merrick. "Site-directed Mutagenesis of Yeast eEF1A." Journal of Biological Chemistry 273, no. 44 (October 30, 1998): 28752–58. http://dx.doi.org/10.1074/jbc.273.44.28752.

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21

Bielli, Pamela, Gian Carlo Bellenchi, and Lilia Calabrese. "Site-directed Mutagenesis of Human Ceruloplasmin." Journal of Biological Chemistry 276, no. 4 (October 19, 2000): 2678–85. http://dx.doi.org/10.1074/jbc.m007176200.

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22

Benjamin, David C., and Samuel S. Perdue. "Site-Directed Mutagenesis in Epitope Mapping." Methods 9, no. 3 (June 1996): 508–15. http://dx.doi.org/10.1006/meth.1996.0058.

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23

Climie, S., L. Ruiz-Perez, D. Gonzalez-Pacanowska, P. Prapunwattana, S. W. Cho, R. Stroud, and D. V. Santi. "Saturation site-directed mutagenesis of thymidylate synthase." Journal of Biological Chemistry 265, no. 31 (November 1990): 18776–79. http://dx.doi.org/10.1016/s0021-9258(17)30579-3.

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24

Kim, Eugene J., Rui-Guang Zhen, and Philip A. Rea. "Site-directed Mutagenesis of Vacuolar H+-pyrophosphatase." Journal of Biological Chemistry 270, no. 6 (February 10, 1995): 2630–35. http://dx.doi.org/10.1074/jbc.270.6.2630.

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25

Garrett, Robert M., and K. V. Rajagopalan. "Site-directed Mutagenesis of Recombinant Sulfite Oxidase." Journal of Biological Chemistry 271, no. 13 (March 29, 1996): 7387–91. http://dx.doi.org/10.1074/jbc.271.13.7387.

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26

Schirwitz, K., A. Schmidt, and V. Lamzin. "Modelling crystal contacts by site-directed mutagenesis." Acta Crystallographica Section A Foundations of Crystallography 60, a1 (August 26, 2004): s131. http://dx.doi.org/10.1107/s0108767304097429.

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27

Molina-Heredia, Fernando P., Antonio Dı́az-Quintana, Manuel Hervás, José A. Navarro, and Miguel A. De la Rosa. "Site-directed Mutagenesis of Cytochromec6fromAnabaenaSpecies PCC 7119." Journal of Biological Chemistry 274, no. 47 (November 19, 1999): 33565–70. http://dx.doi.org/10.1074/jbc.274.47.33565.

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28

Kuipers, Oscar P., Hein J. Boot, and Willem M. de Vos. "Improved site-directed mutagenesis method using PCR." Nucleic Acids Research 19, no. 16 (1991): 4558. http://dx.doi.org/10.1093/nar/19.16.4558.

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29

Lam, Bing K., John F. Penrose, Kongyi Xu, Mathew H. Baldasaro, and K. Frank Austen. "Site-directed Mutagenesis of Human Leukotriene C4Synthase." Journal of Biological Chemistry 272, no. 21 (May 23, 1997): 13923–28. http://dx.doi.org/10.1074/jbc.272.21.13923.

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30

Diner, Bruce A., Peter J. Nixon, and Joseph W. Farchaus. "Site-directed mutagenesis of photosynthetic reaction centers." Current Opinion in Structural Biology 1, no. 4 (August 1991): 546–54. http://dx.doi.org/10.1016/s0959-440x(05)80076-4.

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31

Fraser, C. M. "Site-directed Mutagenesis of β-Adrenergic Receptors." Journal of Biological Chemistry 264, no. 16 (June 1989): 9266–70. http://dx.doi.org/10.1016/s0021-9258(18)60524-1.

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32

Bohnsack, Richard N. "Site-directed mutagenesis using positive antibiotic selection." Molecular Biotechnology 7, no. 2 (April 1997): 181–88. http://dx.doi.org/10.1007/bf02761754.

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33

Murase, Sachiko, Jun S. Takagi, Yasuyuki Higashi, Hiromasa Imaishi, Noboru Yumoto, and Masanobu Tokushige. "Activation of aspartase by site-directed mutagenesis." Biochemical and Biophysical Research Communications 177, no. 1 (May 1991): 414–19. http://dx.doi.org/10.1016/0006-291x(91)91999-s.

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34

Zhuang-Jackson, H., J. M. Moulis, and J. Meyer. "Site-directed mutagenesis of Clostridium pasteurianum rubredoxin." Journal of Inorganic Biochemistry 59, no. 2-3 (August 1995): 524. http://dx.doi.org/10.1016/0162-0134(95)97619-2.

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35

Lamandé, ShireenR, Emanouil Sigalas, SuzanneB Golub, Mon-Li Chu, Rupert Timpl, Marie Dziadek, and JohnF Bateman. "Site-directed mutagenesis of type VI collagen." Matrix Biology 16, no. 2 (May 1997): 74–75. http://dx.doi.org/10.1016/s0945-053x(97)90092-5.

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36

De la Cerda, Berta, Antonio Dı́az-Quintana, José A. Navarro, Manuel Hervás, and Miguel A. De la Rosa. "Site-directed Mutagenesis of Cytochromec6fromSynechocystissp. PCC 6803." Journal of Biological Chemistry 274, no. 19 (May 7, 1999): 13292–97. http://dx.doi.org/10.1074/jbc.274.19.13292.

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37

Storici, Francesca, L. Kevin Lewis, and Michael A. Resnick. "In vivo site-directed mutagenesis using oligonucleotides." Nature Biotechnology 19, no. 8 (August 2001): 773–76. http://dx.doi.org/10.1038/90837.

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38

Bi, Wanli, and Peter J. Stambrook. "Site-Directed Mutagenesis by Combined Chain Reaction." Analytical Biochemistry 256, no. 1 (February 1998): 137–40. http://dx.doi.org/10.1006/abio.1997.2516.

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39

Lee, Norman H., Susan M. Pellegrino, and Claire M. Fraser. "Site-Directed Mutagenesis of α-Adrenergic Receptors." Neuroprotocols 4, no. 1 (February 1994): 20–31. http://dx.doi.org/10.1006/ncmn.1994.1004.

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40

Barber, Michael D., Steven J. Gambling, Herman C. Watson, and Jennifer A. Littlechild. "Site-directed mutagenesis of yeast phosphoglycerate kinase." FEBS Letters 320, no. 3 (April 12, 1993): 193–97. http://dx.doi.org/10.1016/0014-5793(93)80584-h.

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41

Rodríguez-Lecompte, Juan Carlos, and Frederick S. B. Kibenge. "Site-Directed Mutagenesis of Avibirnavirus VP4 Gene." Virology 292, no. 2 (January 2002): 241–46. http://dx.doi.org/10.1006/viro.2001.1260.

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42

Hashimoto-Gotoh, Tamotsu, Toshiki Mizuno, Yuko Ogasahara, and Masao Nakagawa. "An oligodeoxyribonucleotide-directed dual amber method for site-directed mutagenesis." Gene 152, no. 2 (January 1995): 271–75. http://dx.doi.org/10.1016/0378-1119(94)00750-m.

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43

Cupples, C. G., M. Cabrera, C. Cruz, and J. H. Miller. "A set of lacZ mutations in Escherichia coli that allow rapid detection of specific frameshift mutations." Genetics 125, no. 2 (June 1, 1990): 275–80. http://dx.doi.org/10.1093/genetics/125.2.275.

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Abstract We have used site-directed mutagenesis to alter bases in lacZ near the region encoding essential residues in the active site of beta-galactosidase. The altered sequences generate runs of six or seven identical base pairs which create a frameshift, resulting in a Lac- phenotype. Reversion to Lac+ in each strain can occur only by a specific frameshift at these sequences. Monotonous runs of A's (or of T's on the opposite strand) and G's (or C's) have been constructed, as has an alternating -C-G- sequence. These specific frameshift indicator strains complement a set of six previously described strains which detect each of the base substitutions. We have examined a variety of mutagens and mutators for their ability to cause reversion to Lac+. Surprisingly, frameshifts are well stimulated at many of these runs by ethyl methanesulfonate, N-methyl-N'-nitro-N-nitrosoguanidine and 2-amino-purine, mutagens not widely known to induce frameshifts. A comparison of ethyl methanesulfonate, N-methyl-N'-nitro-N-nitrosoguanidine and 2-aminopurine frameshift specificity with that found with a mutH strain suggests that these mutagens partially or fully saturate or inactivate the methylation-directed mismatch repair system and allow replication errors leading to frameshifts to escape repair. This results in a form of indirect mutagenesis, which can be detected at certain sites.

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44

Redick, Sambra D., Daniel L. Settles, Gina Briscoe, and Harold P. Erickson. "Defining Fibronectin's Cell Adhesion Synergy Site by Site-Directed Mutagenesis." Journal of Cell Biology 149, no. 2 (April 17, 2000): 521–27. http://dx.doi.org/10.1083/jcb.149.2.521.

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Fibronectin's RGD-mediated binding to the α5β1 integrin is dramatically enhanced by a synergy site within fibronectin III domain 9 (FN9). Guided by the crystal structure of the cell-binding domain, we selected amino acids in FN9 that project in the same direction as the RGD, presumably toward the integrin, and mutated them to alanine. R1379 in the peptide PHSRN, and the nearby R1374 have been shown previously to be important for α5β1-mediated adhesion (Aota, S., M. Nomizu, and K.M. Yamada. 1994. J. Biol. Chem. 269:24756–24761). Our more extensive set of mutants showed that R1379 is the key residue in the synergistic effect, but other residues contribute substantially. R1374A decreased adhesion slightly by itself, but the double mutant R1374A-R1379A was significantly less adhesive than R1379A alone. Single mutations of R1369A, R1371A, T1385A, and N1386A had negligible effects on cell adhesion, but combining these substitutions either with R1379A or each other gave a more dramatic reduction of cell adhesion. The triple mutant R1374A/P1376A/R1379A had no detectable adhesion activity. We conclude that, in addition to the R of the PHRSN peptide, other residues on the same face of FN9 are required for the full synergistic effect. The integrin-binding synergy site is a much more extensive surface than the small linear peptide sequence.

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45

Mogi, Tatsushi, Satoru Akimoto, Sachiko Endou, Takahiro Watanabe-Nakayama, Eri Mizuochi-Asai, and Hideto Miyoshi. "Probing the Ubiquinol-Binding Site in Cytochromebdby Site-Directed Mutagenesis†." Biochemistry 45, no. 25 (June 2006): 7924–30. http://dx.doi.org/10.1021/bi060192w.

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46

Woodyer, Ryan, Joshua L. Wheatley, Heather A. Relyea, Stacey Rimkus, and Wilfred A. van der Donk. "Site-Directed Mutagenesis of Active Site Residues of Phosphite Dehydrogenase†." Biochemistry 44, no. 12 (March 2005): 4765–74. http://dx.doi.org/10.1021/bi047868c.

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47

CHENG, Long, Bai-Yu HAN, Sha HOU, Yong-Jian HAN, Xiao-Jie XU, Kai JIANG, Fa-Ceng LI, et al. "Site-directed Mutagenesis by Novel Inverse PCR Strategy*." PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS 38, no. 4 (June 15, 2011): 379–82. http://dx.doi.org/10.3724/sp.j.1206.2010.00487.

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48

Fisher, Constance L., and Guo Kui Pei. "Modification of a PCRBased Site-Directed Mutagenesis Method." BioTechniques 23, no. 4 (October 1997): 570–74. http://dx.doi.org/10.2144/97234bm01.

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49

Boyd, A. Christopher, and David J. Porteous. "PCR-Generated Crossover Linkers for Site-Directed Mutagenesis." BioTechniques 23, no. 5 (November 1997): 827–30. http://dx.doi.org/10.2144/97235bm13.

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50

HANDFORD, P. A., and S. S. NER. "Site-directed mutagenesis of Escherichia coli citrate synthase." Biochemical Society Transactions 14, no. 6 (December 1, 1986): 1224. http://dx.doi.org/10.1042/bst0141224.

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