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Journal articles on the topic 'Sequence-function'

Author: Grafiati

Published: 9 March 2023

Last updated: 10 March 2023

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1

Holding, Cathy. "Can sequence predict function?" Genome Biology 4 (2004): spotlight—20040419–01. http://dx.doi.org/10.1186/gb-spotlight-20040419-01.

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2

K., Sahityabhilash. "Impact of Loss Function Using M-LSTM Classifier for Sequence Data." International Journal of Psychosocial Rehabilitation 24, no. 5 (April 20, 2020): 3487–94. http://dx.doi.org/10.37200/ijpr/v24i5/pr202059.

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3

Copp, Janine N., Eyal Akiva, Patricia C. Babbitt, and Nobuhiko Tokuriki. "Revealing Unexplored Sequence-Function Space Using Sequence Similarity Networks." Biochemistry 57, no. 31 (July 27, 2018): 4651–62. http://dx.doi.org/10.1021/acs.biochem.8b00473.

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4

Guzide. "The Conditional Sequence Information Function." Journal of Mathematics and Statistics 6, no. 2 (April 1, 2010): 89–91. http://dx.doi.org/10.3844/jmssp.2010.89.91.

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5

Licinio, J., and M.-L. Wong. "Sequence and function in pharmacogenomics." Pharmacogenomics Journal 3, no. 3 (January 2003): 123. http://dx.doi.org/10.1038/sj.tpj.6500185.

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6

Ameres, Stefan L., and Phillip D. Zamore. "Diversifying microRNA sequence and function." Nature Reviews Molecular Cell Biology 14, no. 8 (June 26, 2013): 475–88. http://dx.doi.org/10.1038/nrm3611.

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7

Starr, Tyler N., and Joseph W. Thornton. "Exploring protein sequence–function landscapes." Nature Biotechnology 35, no. 2 (February 2017): 125–26. http://dx.doi.org/10.1038/nbt.3786.

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8

Pauli-Magnus, Christiane, and Deanna L. Kroetz. "reference sequence and reference function." Clinical Pharmacology and Therapeutics 72, no. 1 (July 2002): 100–101. http://dx.doi.org/10.1067/mcp.2002.125561.

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9

Danchin, Antoine. "From protein sequence to function." Current Opinion in Structural Biology 9, no. 3 (June 1999): 363–67. http://dx.doi.org/10.1016/s0959-440x(99)80049-9.

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10

Whisstock, James C., and Arthur M. Lesk. "4. Predicting function from sequence." Reproduction, Fertility and Development 15, no. 9 (2003): 4. http://dx.doi.org/10.1071/srb03ab4.

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11

Battor, Ali Hussein, Alaa Fawzidabbas, and Maysoon Azeen Neamah. "Double Sequence Space of Fuzzy Real numbers Defined by Double Orlicz Function." International Journal of Psychosocial Rehabilitation 24, no. 02 (February 13, 2020): 3730–43. http://dx.doi.org/10.37200/ijpr/v24i2/pr200696.

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12

P, Rajiniganth, and Britto Antony Xavier G. "Fibonacci Sequence and Series by Second Order Difference Operator with Logarithmic Function." Journal of Computational Mathematica 2, no. 2 (December 30, 2018): 51–60. http://dx.doi.org/10.26524/cm39.

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13

Araújo, G., L. Bernal-González, G. A. Muñoz-Fernández, J. A. Prado-Bassas, and J. B. Seoane-Sepúlveda. "Lineability in sequence and function spaces." Studia Mathematica 237, no. 2 (2017): 119–36. http://dx.doi.org/10.4064/sm8358-10-2016.

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14

OLIVEIRA, M. A. P., Marconni Augusto Pock de Oliveira, Miguel Chaquiam CHAQUIAM, M., Natanael Freitas Cabral CABRAL, N. F., Gustavo Nogueira Dias DIAS, G. N., Cássio Pinho dos Reis REIS, C. P., Eldilene da Silva Barbosa BARBOSA, E. S., Jamile Carla Oliveira Araújo ARAÚJO, J. C. O., et al. "Didactic Sequence for Teaching Exponential Function." International Journal for Innovation Education and Research 9, no. 8 (August 1, 2021): 147–64. http://dx.doi.org/10.31686/ijier.vol9.iss8.3270.

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This paper presents a methodological proposal for the teaching of exponential function, resulting from the application of a didactic sequence involving exponential function, where evidence of learning and the consolidation and application of mathematical concepts in problem solving were identified and analyzed. The Didactic Engineering of Michèle Artigue (1988) was used as a research methodology. As theoretical contributions that guided and enabled the development of the research, we chose the use of Mathematical Investigation in the classroom; Didactic Sequence in the conception of Zabala (1999); the Articulated Units of Conceptual Reconstruction proposed by Cabral (2017) and assumptions of Vygotsky's theory. A didactic sequence composed of five UARC's was elaborated to work the exponential function, with a view to minimizing the difficulties naturally imposed by the content to be explained. Microgenetic analysis of verbal interactions between teacher and students was used to analyze the results of the application. The results show that the students participating in the experiment showed evidence of learning, recorded during the process, and began to have a good understanding of the concepts and properties related to the topic, in addition to a good performance in carrying out the activities, facts that corroborate the potential of the didactic sequence proposed herein.

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15

Oliver, Stephen G. "From DNA sequence to biological function." Nature 379, no. 6566 (February 1996): 597–600. http://dx.doi.org/10.1038/379597a0.

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16

Georgakis, Constantine. "Bounded sequence-to-function Hausdorff transformations." Proceedings of the American Mathematical Society 103, no. 2 (February 1, 1988): 531. http://dx.doi.org/10.1090/s0002-9939-1988-0943080-1.

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17

Taussig, M. "Proteomics: From Protein Sequence to Function." Briefings in Functional Genomics and Proteomics 1, no. 2 (January 1, 2002): 213–14. http://dx.doi.org/10.1093/bfgp/1.2.213.

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18

Dailey, Harry A. "Proteomics - from protein sequence to function." Human Genetics 108, no. 6 (May 16, 2001): 555. http://dx.doi.org/10.1007/s004390100516.

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19

Minshull, Jeremy, Jon E. Ness, Claes Gustafsson, and Sridhar Govindarajan. "Predicting enzyme function from protein sequence." Current Opinion in Chemical Biology 9, no. 2 (April 2005): 202–9. http://dx.doi.org/10.1016/j.cbpa.2005.02.003.

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20

Schwartz, Ira. "Microbial Genomics: From Sequence to Function." Emerging Infectious Diseases 6, no. 5 (October 2000): 493–95. http://dx.doi.org/10.3201/eid0605.000508.

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21

Heijne, Gunnar von. "Turning yeast sequence into protein function." Nature Biotechnology 14, no. 4 (April 1996): 429. http://dx.doi.org/10.1038/nbt0496-429a.

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22

Thompson, James D. "Shortcuts from gene sequence to function." Nature Biotechnology 17, no. 12 (December 1999): 1158–59. http://dx.doi.org/10.1038/70698.

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23

He, Chenlu, and Dorothy Beckett. "Plasticity in Protein Sequence-Function Relationships." Biophysical Journal 118, no. 3 (February 2020): 201a. http://dx.doi.org/10.1016/j.bpj.2019.11.1210.

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24

Ranjan, Chitta, Samaneh Ebrahimi, and Kamran Paynabar. "Sequence graph transform (SGT): a feature embedding function for sequence data mining." Data Mining and Knowledge Discovery 36, no. 2 (January 4, 2022): 668–708. http://dx.doi.org/10.1007/s10618-021-00813-0.

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25

Kulmanov, Maxat, and Robert Hoehndorf. "DeepGOPlus: improved protein function prediction from sequence." Bioinformatics 37, no. 8 (April 15, 2021): 1187. http://dx.doi.org/10.1093/bioinformatics/btaa763.

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26

Astashkin, Sergey V., and Lech Maligranda. "Interpolation of Cesàro sequence and function spaces." Studia Mathematica 215, no. 1 (2013): 39–69. http://dx.doi.org/10.4064/sm215-1-4.

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27

Oelschlaeger, Peter. "β-Lactamases: Sequence, Structure, Function, and Inhibition." Biomolecules 11, no. 7 (July 5, 2021): 986. http://dx.doi.org/10.3390/biom11070986.

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28

Trickovic, Slobodan, and Miomir Stankovic. "On a generalized function-to-sequence transform." Applicable Analysis and Discrete Mathematics, no. 00 (2020): 5. http://dx.doi.org/10.2298/aadm180908005t.

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By attaching a sequence {?n}n?N0 to the binomial transform, a new operator D? is obtained. We use the same sequence to define a new transform T? mapping derivatives to the powers of D?, and integrals to D-1?. The inverse transform B? of T? is introduced and its properties are studied. For ?n = (-1)n, B? reduces to the Borel transform. Applying T? to Bessel's differential operator d/dx x d/dx, we obtain Bessel's discrete operator D?nN?. Its eigenvectors correspond to eigenfunctions of Bessel's differential operator.

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29

Azarian, Mohammad K. "The Generating Function for the Fibonacci Sequence." Missouri Journal of Mathematical Sciences 2, no. 2 (May 1990): 78–79. http://dx.doi.org/10.35834/1990/0202078.

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30

Prasad, Krishnandan, and Amar Nath Kumar. "Dual and perfect sequence and function space." Bulletin of Pure & Applied Sciences- Mathematics and Statistics 39e, no. 1 (2020): 37. http://dx.doi.org/10.5958/2320-3226.2020.00003.x.

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31

White, Robert H. "The Difficult Road from Sequence to Function." Journal of Bacteriology 188, no. 10 (May 15, 2006): 3431–32. http://dx.doi.org/10.1128/jb.188.10.3431-3432.2006.

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32

GELFAND, M. S. "Prediction of Function in DNA Sequence Analysis." Journal of Computational Biology 2, no. 1 (January 1995): 87–115. http://dx.doi.org/10.1089/cmb.1995.2.87.

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33

Azizov, A. N., and V. I. Chilin. "Symmetric function spaces from symmetric sequence spaces." Uzbek Mathematical Journal 2019, no. 4 (December 2, 2019): 37–46. http://dx.doi.org/10.29229/uzmj.2019-4-4.

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34

Engelhardt, Barbara E., and Christopher D. Brown. "Diving deeper to predict noncoding sequence function." Nature Methods 12, no. 10 (September 29, 2015): 925–26. http://dx.doi.org/10.1038/nmeth.3604.

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35

Hutvágner, György, Martin J. Simard, Craig C. Mello, and Phillip D. Zamore. "Sequence-Specific Inhibition of Small RNA Function." PLoS Biology 2, no. 4 (February 24, 2004): e98. http://dx.doi.org/10.1371/journal.pbio.0020098.

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36

Lee, David, Oliver Redfern, and Christine Orengo. "Predicting protein function from sequence and structure." Nature Reviews Molecular Cell Biology 8, no. 12 (December 2007): 995–1005. http://dx.doi.org/10.1038/nrm2281.

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37

Yim, Hong-Suh, Yong-Ik Byun, Young-Jong Sohn, and Mun-Suk Chun. "The Main-Sequence Luminosity Function of M13." Astronomical Journal 120, no. 2 (August 2000): 872–78. http://dx.doi.org/10.1086/301463.

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38

Delcroix, Antoine, Maximilian F. Hasler, Stevan Pilipovic, and Vincent Valmorin. "Generalized function algebras as sequence space algebras." Proceedings of the American Mathematical Society 132, no. 7 (February 12, 2004): 2031–38. http://dx.doi.org/10.1090/s0002-9939-04-07306-x.

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39

MARTÍNEZ-GIMÉNEZ, F., and A. PERIS. "CHAOTIC POLYNOMIALS ON SEQUENCE AND FUNCTION SPACES." International Journal of Bifurcation and Chaos 20, no. 09 (September 2010): 2861–67. http://dx.doi.org/10.1142/s0218127410027416.

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We study chaos in the sense of Devaney for two models of polynomials (homogeneous and non-homogeneous) of arbitrary degree, defined on certain sequence spaces. Consequences are also obtained for the chaotic dynamics of the corresponding polynomials on some function spaces.

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40

Koonin, Eugene V. "Bridging the gap between sequence and function." Trends in Genetics 16, no. 1 (January 2000): 16. http://dx.doi.org/10.1016/s0168-9525(99)01927-7.

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41

Ponting, C. P. "Issues in predicting protein function from sequence." Briefings in Bioinformatics 2, no. 1 (January 1, 2001): 19–29. http://dx.doi.org/10.1093/bib/2.1.19.

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42

Kumar, Prasun, and Manju Bansal. "Dissecting π-helices: sequence, structure and function." FEBS Journal 282, no. 22 (October 3, 2015): 4415–32. http://dx.doi.org/10.1111/febs.13507.

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43

Sancho, J. "Flavodoxins: sequence, folding, binding, function and beyond." Cellular and Molecular Life Sciences 63, no. 7-8 (February 7, 2006): 855–64. http://dx.doi.org/10.1007/s00018-005-5514-4.

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44

Rhoades, B. E. "Bounded sequence-to-function generalized Hausdorff transformations." Proceedings of the American Mathematical Society 126, no. 6 (1998): 1769–82. http://dx.doi.org/10.1090/s0002-9939-98-04256-7.

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45

Liang, Shide, and Nick V. Grishin. "Effective scoring function for protein sequence design." Proteins: Structure, Function, and Bioinformatics 54, no. 2 (December 12, 2003): 271–81. http://dx.doi.org/10.1002/prot.10560.

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46

Cintra, A. C. O., S. Marangoni, B. Oliveira, and J. R. Giglio. "Bothropstoxin-I: Amino acid sequence and function." Journal of Protein Chemistry 12, no. 1 (February 1993): 57–64. http://dx.doi.org/10.1007/bf01024915.

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47

Johs, Alexander. "Bridging the Gap between Sequence and Function." Biophysical Journal 104, no. 2 (January 2013): 230a—231a. http://dx.doi.org/10.1016/j.bpj.2012.11.1300.

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48

Eginton, Christopher, Saranga Naganathan, and Dorothy Beckett. "Sequence-function relationships in folding upon binding." Protein Science 24, no. 2 (December 26, 2014): 200–211. http://dx.doi.org/10.1002/pro.2605.

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49

Chapman, Michael S., and Michael G. Rossmann. "Structure, Sequence, and Function Correlations among Parvoviruses." Virology 194, no. 2 (June 1993): 491–508. http://dx.doi.org/10.1006/viro.1993.1288.

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50

Singla, Himanshu. "Behaviour of Sequence of Function and Continuous Function on Unbounded Interval." International Journal for Research in Applied Science and Engineering Technology 6, no. 1 (January 31, 2018): 1856–57. http://dx.doi.org/10.22214/ijraset.2018.1279.

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