Academic literature on the topic 'RRNA gene analysis'
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Journal articles on the topic "RRNA gene analysis"
Liu, Junjie, Peng Li, Liuyang Lu, Lanfen Xie, Xiling Chen, and Baizhong Zhang. "Selection and evaluation of potential reference genes for gene expression analysis in Avena fatua Linn." Plant Protection Science 55, No. 1 (November 20, 2018): 61–71. http://dx.doi.org/10.17221/20/2018-pps.
Full textGonzalez-y-Merchand, J. A., M. J. Colston, and R. A. Cox. "Effects of Growth Conditions on Expression of Mycobacterial murA and tyrS Genes and Contributions of Their Transcripts to Precursor rRNA Synthesis." Journal of Bacteriology 181, no. 15 (August 1, 1999): 4617–27. http://dx.doi.org/10.1128/jb.181.15.4617-4627.1999.
Full textYap, Wai Ho, Zhenshui Zhang, and Yue Wang. "Distinct Types of rRNA Operons Exist in the Genome of the Actinomycete Thermomonospora chromogena and Evidence for Horizontal Transfer of an Entire rRNA Operon." Journal of Bacteriology 181, no. 17 (September 1, 1999): 5201–9. http://dx.doi.org/10.1128/jb.181.17.5201-5209.1999.
Full textMenendez, M. C., M. J. Garcia, M. C. Navarro, J. A. Gonzalez-y-Merchand, S. Rivera-Gutierrez, L. Garcia-Sanchez, and R. A. Cox. "Characterization of an rRNA Operon (rrnB) of Mycobacterium fortuitum and Other Mycobacterial Species: Implications for the Classification of Mycobacteria." Journal of Bacteriology 184, no. 4 (February 15, 2002): 1078–88. http://dx.doi.org/10.1128/jb.184.4.1078-1088.2002.
Full textPrammananan, Therdsak, Peter Sander, Burkhard Springer, and Erik C. Böttger. "RecA-Mediated Gene Conversion and Aminoglycoside Resistance in Strains Heterozygous for rRNA." Antimicrobial Agents and Chemotherapy 43, no. 3 (March 1, 1999): 447–53. http://dx.doi.org/10.1128/aac.43.3.447.
Full textSpringer, Burkhard, Yishak G. Kidan, Therdsak Prammananan, Kerstin Ellrott, Erik C. Böttger, and Peter Sander. "Mechanisms of Streptomycin Resistance: Selection of Mutations in the 16S rRNA Gene Conferring Resistance." Antimicrobial Agents and Chemotherapy 45, no. 10 (October 1, 2001): 2877–84. http://dx.doi.org/10.1128/aac.45.10.2877-2884.2001.
Full textKöhler, Gerwald, Wolfgang Ludwig, and Karl Heinz Schleifer. "Differentiation of lactococci by rRNA gene restriction analysis." FEMS Microbiology Letters 84, no. 3 (December 1991): 307–12. http://dx.doi.org/10.1111/j.1574-6968.1991.tb04615.x.
Full textMiyashita, Mika, Takeshi Sakane, Ken-ichiro Suzuki, and Yasuyoshi Nakagawa. "16S rRNA gene and 16S-23S rRNA gene internal transcribed spacer sequences analysis of the genus Myxococcus." FEMS Microbiology Letters 282, no. 2 (April 4, 2008): 241–45. http://dx.doi.org/10.1111/j.1574-6968.2008.01127.x.
Full textPaul, Bobby. "Concatenated 16S rRNA sequence analysis improves bacterial taxonomy." F1000Research 11 (December 19, 2022): 1530. http://dx.doi.org/10.12688/f1000research.128320.1.
Full textBaylis, H. A., and M. J. Bibb. "Transcriptional analysis of the 16S rRNA gene of the rrnD gene set of Streptomyces coelicolor A3(2)." Molecular Microbiology 2, no. 5 (September 1988): 569–79. http://dx.doi.org/10.1111/j.1365-2958.1988.tb00065.x.
Full textDissertations / Theses on the topic "RRNA gene analysis"
Lanyon, Clare. "16S rRNA gene sequence analysis of non-methanogenic Archaea in a hypereutrophic freshwater lake." Thesis, University of Liverpool, 2004. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.402322.
Full textHermansson, Anna. "Ammonia-oxidising bacteria in soil : studies of diversity and abundance using 16S rRNA gene analysis /." Linköping : Univ, 2001. http://www.bibl.liu.se/liupubl/disp/disp2001/tek712s.pdf.
Full textWakeman, Jane A. "Human ribosomal RNA : primary structure analysis of the 28S rRNA gene and preliminary studies on the distribution of pseudouridine residues in the 18S and 28S rRNA molecules." Thesis, University of Liverpool, 1988. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.317264.
Full textCalus, Szymon Tomasz. "Evaluation of nanopore-based sequencing technology for gene marker based analysis of complex microbial communities : method development for accurate 16S rRNA gene amplicon sequencing." Thesis, University of Glasgow, 2018. http://theses.gla.ac.uk/41086/.
Full textAl, Masalma Mouhamad. "Molecular and cultural analysis of the bacterial flora associated with brain abscesses." Thesis, Aix-Marseille 2, 2011. http://www.theses.fr/2011AIX20663/document.
Full textBrain abscess is a life-threatening infection with frequent serious sequelae. The medical management remains empirical due to a lack of comprehensive knowledge of the microorganisms responsible for this condition. In most microbiology laboratories the diagnosis of brain abscess is based on culture from pus collected surgically. Unfortunately, this procedure has many limitations and reveals only a small portion of the true microbial population. PCR-amplified 16S rDNA sequencing has recently been used to overcome the limitations of culture-based bacterial detection in brain abscess pus, and it was demonstrated to be effective in the documentation of monomicrobial infections. Unfortunately, this procedure failed to discriminate among polymicrobial floras.Metagenomic studies of complex human floras using a combination of 16S rDNA PCR and cloning-sequencing of PCR products proved useful to evaluate the bacterial diversity of dental, vaginal and intestinal floras. Thus, we applied this technique to brain abscess samples to study the flora associated with this condition. In a first step, we performed an investigation using culture and molecular techniques. The purpose of this investigation was to analyze and evaluate the bacterial flora responsible for brain abscess by comparing standard culture technique to three techniques using 16S rDNA amplification, that is, direct sequencing, multiple sequencing following cloning, and multiple sequencing via high throughput pyrosequencing. This investigation has determined that the variety of brain abscess-associated bacterial species is much larger than previously reported, and it includes many anaerobes and uncultured bacteria from the oral cavity flora. This preliminary study identified 49 distinct brain abscess bacterial agents, and enabled the identification of 27 bacteria never detected before in brain abscess, 15 of which were uncultured.Such a high number of bacterial species involved in brain abscess prompted the study of 51 new specimens in an effort to describe further the flora associated with brain abscesses and their etiologies. Thus, we performed a 16S rDNA-based metagenomic analysis of cerebral abscesses from 51 patients. Our strategy was significantly more discriminatory and enabled the identification of greater number of bacterial taxa, than culture and conventional 16S rDNA PCR/sequencing, respectively. The combination of data from 71 patients (20 from the first study and 51 from the second study) enabled the identification of several associations using the data mining analysis. Also, these studies permitted the identification of two novel bacteria, the first being a novel Staphylococcus species (Staphylococcus massiliensis) and the second being a novel anaerobic bacterium that represents a novel species in a new genus within the phylum Bacteroidetes (Phocaeicola abscesses). In addition, we reported tow unusual cases of brain abscess, the first case was a Mycoplasma hominis brain abscess following uterus curettage and the second case was a Nocardia carnea infection in a kidney transplant recipient patient.Despite limitations inherent to the cloning procedure, our results suggest that cloning and sequencing of PCR-amplified 16S rDNA is a highly valuable method to identify bacterial agents of brain abscesses
Gustafson, Aubree Marie. "T-RFLP analysis of bacterial 16S rRNA gene sequences isolated from river otter (Lontra canadensis) scat and parasite screening for the presence of Toxoplasma gondii." Scholarly Commons, 2009. https://scholarlycommons.pacific.edu/uop_etds/732.
Full textKanso, Sungwan, and n/a. "Molecular Studies of Bacterial Communities in the Great Artesian Basin Aquifers." Griffith University. School of Biomolecular and Biomedical Science, 2004. http://www4.gu.edu.au:8080/adt-root/public/adt-QGU20040219.140509.
Full textKanso, Sungwan. "Molecular Studies of Bacterial Communities in the Great Artesian Basin Aquifers." Thesis, Griffith University, 2004. http://hdl.handle.net/10072/366613.
Full textThesis (PhD Doctorate)
Doctor of Philosophy (PhD)
School of Biomolecular and Biomedical Sciences
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Kuo, Tai-chih. "The group I ribozyme from the chloroplast rRNA gene of Chlamydomonas reinhardtii : kinetic and structural analysis of the divalent metal requirement and specific interactions with manganese (II) /." Digital version accessible at:, 1998. http://wwwlib.umi.com/cr/utexas/main.
Full textHarvey, Robert Jr. "Using PCR Amplification and Genetic Sequence Analysis of 18S rRNA Genes to Survey the Microbial Diversity and Distribution of Eukaryotic Microbes Inhabiting Two Thermo-acidic Streams in Yellowstone National Park, Wyoming." ScholarWorks@UNO, 2009. http://scholarworks.uno.edu/td/978.
Full textBooks on the topic "RRNA gene analysis"
Cheng, Bifang. Cytogenetics of Brassica species and addition lines: Karyotypes, genome analysis and rRNA gene loci. Svalöf, Sweden: Swedish University of Agricultural Sciences, Dept. of Plant Breeding Research, 1996.
Find full textBook chapters on the topic "RRNA gene analysis"
Hall, Michael, and Robert G. Beiko. "16S rRNA Gene Analysis with QIIME2." In Methods in Molecular Biology, 113–29. New York, NY: Springer New York, 2018. http://dx.doi.org/10.1007/978-1-4939-8728-3_8.
Full textComtet-Marre, Sophie, Oshma Chakoory, and Pierre Peyret. "Targeted 16S rRNA Gene Capture by Hybridization and Bioinformatic Analysis." In Microbial Environmental Genomics (MEG), 187–208. New York, NY: Springer US, 2022. http://dx.doi.org/10.1007/978-1-0716-2871-3_10.
Full textSaha, Mousumi, Agniswar Sarkar, and Bidyut Bandyopadhyay. "Phylogenetic Characterization of Nitrifying Bacteria Isolated from East Kolkata Wetland." In Proceedings of the Conference BioSangam 2022: Emerging Trends in Biotechnology (BIOSANGAM 2022), 114–22. Dordrecht: Atlantis Press International BV, 2022. http://dx.doi.org/10.2991/978-94-6463-020-6_12.
Full textMerkl, Philipp E., Christopher Schächner, Michael Pilsl, Katrin Schwank, Kristin Hergert, Gernot Längst, Philipp Milkereit, Joachim Griesenbeck, and Herbert Tschochner. "Analysis of Yeast RNAP I Transcription of Nucleosomal Templates In Vitro." In Ribosome Biogenesis, 39–59. New York, NY: Springer US, 2022. http://dx.doi.org/10.1007/978-1-0716-2501-9_3.
Full textDuduk, Bojan, Samanta Paltrinieri, Ing-Ming Lee, and Assunta Bertaccini. "Nested PCR and RFLP Analysis Based on the 16S rRNA Gene." In Methods in Molecular Biology, 159–71. Totowa, NJ: Humana Press, 2012. http://dx.doi.org/10.1007/978-1-62703-089-2_14.
Full textBarrios Hernández, Mary Luz. "Eukaryotic community characterisation by 18s rRNA gene analysis in full-scale systems." In Pathogen removal in aerobic granular sludge treatment systems, 91–112. London: CRC Press, 2022. http://dx.doi.org/10.1201/9781003231622-5.
Full textLawley, Blair, and Gerald W. Tannock. "Analysis of 16S rRNA Gene Amplicon Sequences Using the QIIME Software Package." In Methods in Molecular Biology, 153–63. New York, NY: Springer New York, 2016. http://dx.doi.org/10.1007/978-1-4939-6685-1_9.
Full textStackebrandt, Erko. "Pitfalls of PCR-Based rRNA Gene Sequence Analysis: An Update on Some Parameters." In Handbook of Molecular Microbial Ecology I, 129–33. Hoboken, NJ, USA: John Wiley & Sons, Inc., 2011. http://dx.doi.org/10.1002/9781118010518.ch16.
Full textMartini, Marta, Kristi D. Bottner-Parker, and Ing-Ming Lee. "PCR-Based Sequence Analysis on Multiple Genes Other than 16S rRNA Gene for Differentiation of Phytoplasmas." In Phytoplasmas, 97–115. New York, NY: Springer New York, 2018. http://dx.doi.org/10.1007/978-1-4939-8837-2_8.
Full textMohannath, Gireesha, and Craig S. Pikaard. "Analysis of rRNA Gene Methylation in Arabidopsis thaliana by CHEF-Conventional 2D Gel Electrophoresis." In The Nucleolus, 183–202. New York, NY: Springer New York, 2016. http://dx.doi.org/10.1007/978-1-4939-3792-9_14.
Full textConference papers on the topic "RRNA gene analysis"
Silva, M. L. R. Bastos, M. C. C. Pereira Lyra, J. Paula Oliveira, H. Almeida Burity, and G. M. Campos-Takaki. "Microbial diversity in Chromobacterium violaceum determined by 16S rRNA gene analysis." In Proceedings of the II International Conference on Environmental, Industrial and Applied Microbiology (BioMicroWorld2007). WORLD SCIENTIFIC, 2009. http://dx.doi.org/10.1142/9789812837554_0063.
Full textAleev, Vladislav S., and Elena G. Plotnikova. "GENETIC AND ECOLOGICAL-PHYSIOLOGICAL CHARACTERISTICS OF BACTERIA OF THE GENUS SALINISPHAERA (CLASS GAMMAPROTEOBACTERIA) ISOLATED FROM THE VERKHNEKAMSKY SALT MINER." In Фундаментальные и прикладные исследования в биологии и экологии. Пермский государственный национальный исследовательский университет, 2021. http://dx.doi.org/10.17072/fpibe-2021-4-7.
Full textDeljou, A., K. Mousavi, A. Ghasemi, and H. Rahimian. "Identification of Mycobacterium sp. as Alfalfa endophytes using 16s rRNA gene sequence analysis." In Proceedings of the II International Conference on Environmental, Industrial and Applied Microbiology (BioMicroWorld2007). WORLD SCIENTIFIC, 2009. http://dx.doi.org/10.1142/9789812837554_0013.
Full textYamasaki, Kei, Kazuhiro Yatera, Toshinori Kawanami, Kazumasa Fukuda, Shingo Noguchi, Shuya Nagata, Chinatsu Nishida, et al. "The Bacteriological Incidence Of Community-Acquired Pneumonia Using Clone Analysis Of 16S RRNA Gene." In American Thoracic Society 2012 International Conference, May 18-23, 2012 • San Francisco, California. American Thoracic Society, 2012. http://dx.doi.org/10.1164/ajrccm-conference.2012.185.1_meetingabstracts.a5243.
Full textKawanami, Toshinori, Shingo Noguchi, Kentarou Akata, Keisuke Naito, Tsutomu Takaki, Keishi Oda, Minako Hanaka, Takashi Kido, Hiroshi Mukae, and Kazuhiro Yatera. "Risk factors associated with “PES pathogens” in community-onset pneumonia: 16S rRNA gene analysis of BALF." In ERS International Congress 2017 abstracts. European Respiratory Society, 2017. http://dx.doi.org/10.1183/1393003.congress-2017.oa471.
Full textNaito, Keisuke, Shingo Noguchi, Kazuhiro Yatera, Kentarou Akata, Chinatsu Nishida, Kei Yamasaki, Takeshi Orihashi, et al. "The bacteriological incidence of lung abscess using clone library analysis of 16S rRNA gene in bronchoalveolar lavage." In Annual Congress 2015. European Respiratory Society, 2015. http://dx.doi.org/10.1183/13993003.congress-2015.pa5040.
Full textEltai, Nahla O., Sara H. Al-Hadidi, Asmaa A. Al Than, Sanjay H. Doiphode, and Hadi M. Yassine. "Salmonellosis among Pediatric Population in Qatar: Prevalence, Antibiotic Resistance and Molecular Epidemiology." In Qatar University Annual Research Forum & Exhibition. Qatar University Press, 2020. http://dx.doi.org/10.29117/quarfe.2020.0126.
Full textKawanami, Toshinori, Shingo Noguchi, Kei Yamasaki, Ryosuke Hata, Hiroaki Ikegami, Kaori Kato, Hiroshi Mukae, and Kazuhiro Yatera. "Relationship between a detection of anaerobes in the lung and poor oral hygiene; using the bacterial floral analysis of 16S rRNA gene." In ERS International Congress 2019 abstracts. European Respiratory Society, 2019. http://dx.doi.org/10.1183/13993003.congress-2019.oa5145.
Full textGuro, P., V. Safronova, A. Sazanova, I. Kuznetsova, A. Belimov, V. Yakubov, E. Chirak, A. Afonin, E. Andronov, and I. Tikhonovich. "Rhizobial microsymbionts of the narrowly endemic Oxytropis species growing in Kamchatka possess a set of genes that are associated with T3SS and T6SS secretion systems and can affect the development of symbiosis." In 2nd International Scientific Conference "Plants and Microbes: the Future of Biotechnology". PLAMIC2020 Organizing committee, 2020. http://dx.doi.org/10.28983/plamic2020.099.
Full textHidayat, Habibi. "Analysis of 16S rRNA gene lactic acid bacteria (LAB) isolate from Markisa fruit (Passiflora sp.) as a producer of protease enzyme and probiotics." In PROCEEDINGS FROM THE 14TH INTERNATIONAL SYMPOSIUM ON THERAPEUTIC ULTRASOUND. Author(s), 2017. http://dx.doi.org/10.1063/1.4978183.
Full textReports on the topic "RRNA gene analysis"
Zchori-Fein, Einat, Judith K. Brown, and Nurit Katzir. Biocomplexity and Selective modulation of whitefly symbiotic composition. United States Department of Agriculture, June 2006. http://dx.doi.org/10.32747/2006.7591733.bard.
Full textOstersetzer-Biran, Oren, and Jeffrey Mower. Novel strategies to induce male sterility and restore fertility in Brassicaceae crops. United States Department of Agriculture, January 2016. http://dx.doi.org/10.32747/2016.7604267.bard.
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