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Journal articles on the topic 'Rna 3'

Author: Grafiati
Published: 27 June 2021
Last updated: 13 February 2022

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1

Manley, J. L., N. J. Proudfoot, and T. Platt. "RNA 3'-end formation." Genes & Development 3, no. 12b (December 1, 1989): 2218–22. http://dx.doi.org/10.1101/gad.3.12b.2218.

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2

Olagunju, Temitayo Adebanji, Chisom Ezekannagha, and Andreas Gisel. "3’-Tag RNA-sequencing." EMBnet.journal 26, A (July 8, 2021): e968. http://dx.doi.org/10.14806/ej.26.a.968.

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3

Desai, Kevin K., Craig A. Bingman, Chin L. Cheng, George N. Phillips, and Ronald T. Raines. "Structure of RNA 3′-phosphate cyclase bound to substrate RNA." RNA 20, no. 10 (August 26, 2014): 1560–66. http://dx.doi.org/10.1261/rna.045823.114.

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4

O'TOOLE, A. S. "Stability of 3' double nucleotide overhangs that model the 3' ends of siRNA." RNA 11, no. 4 (April 1, 2005): 512–16. http://dx.doi.org/10.1261/rna.7254905.

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5

LI, Z. "Co-evolution of tRNA 3' trailer sequences with 3' processing enzymes in bacteria." RNA 11, no. 5 (May 1, 2005): 567–77. http://dx.doi.org/10.1261/rna.7287505.

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6

Zheng, Dinghai, Xiaochuan Liu, and Bin Tian. "3′READS+, a sensitive and accurate method for 3′ end sequencing of polyadenylated RNA." RNA 22, no. 10 (August 10, 2016): 1631–39. http://dx.doi.org/10.1261/rna.057075.116.

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7

Terenzi, Silvia, Ewa Biała, Nhat Quang Nguyen-Trung, and Peter Strazewski. "Amphiphilic 3′-Peptidyl-RNA Conjugates." Angewandte Chemie International Edition 42, no. 25 (June 30, 2003): 2909–12. http://dx.doi.org/10.1002/anie.200350926.

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8

GOULD, Allan R., and Robert H. SYMONS. "Cucumber Mosaic Virus RNA 3." European Journal of Biochemistry 126, no. 2 (March 3, 2005): 217–26. http://dx.doi.org/10.1111/j.1432-1033.1982.tb06769.x.

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9

Mahy, B. W. J. "RNA genetics vols. 1–3." Virus Research 12, no. 4 (April 1989): 393–94. http://dx.doi.org/10.1016/0168-1702(89)90096-8.

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10

Scott, Daniel D., and Chris J. Norbury. "RNA decay via 3′ uridylation." Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1829, no. 6-7 (June 2013): 654–65. http://dx.doi.org/10.1016/j.bbagrm.2013.01.009.

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11

Choi, Y. S., W. Patena, A. D. Leavitt, and M. T. McManus. "Widespread RNA 3'-end oligouridylation in mammals." RNA 18, no. 3 (January 30, 2012): 394–401. http://dx.doi.org/10.1261/rna.029306.111.

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12

Potenza, Nicoletta, Loredana Moggio, Giovanna Milano, Vincenzo Salvatore, Benedetto Di Blasio, Aniello Russo, and Anna Messere. "RNA Interference in Mammalia Cells by RNA-3’-PNA Chimeras." International Journal of Molecular Sciences 9, no. 3 (March 12, 2008): 299–315. http://dx.doi.org/10.3390/ijms9030299.

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13

Moritz, B., and E. Wahle. "Simple methods for the 3' biotinylation of RNA." RNA 20, no. 3 (January 21, 2014): 421–27. http://dx.doi.org/10.1261/rna.042986.113.

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14

Ohlson, J., J. S. Pedersen, D. Haussler, and M. Ohman. "Editing modifies the GABAA receptor subunit 3." RNA 13, no. 5 (May 1, 2007): 698–703. http://dx.doi.org/10.1261/rna.349107.

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15

Rouleau, Samuel, Jean-Pierre Sehi Glouzon, Andrea Brumwell, Martin Bisaillon, and Jean-Pierre Perreault. "3′ UTR G-quadruplexes regulate miRNA binding." RNA 23, no. 8 (May 4, 2017): 1172–79. http://dx.doi.org/10.1261/rna.060962.117.

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16

Mitchell, David, Andrew J. Renda, Catherine A. Douds, Paul Babitzke, Sarah M. Assmann, and Philip C. Bevilacqua. "In vivo RNA structural probing of uracil and guanine base-pairing by 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC)." RNA 25, no. 1 (October 19, 2018): 147–57. http://dx.doi.org/10.1261/rna.067868.118.

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17

Su, W., S. V. Slepenkov, M. K. Slevin, S. M. Lyons, M. Ziemniak, J. Kowalska, E. Darzynkiewicz, J. Jemielity, W. F. Marzluff, and R. E. Rhoads. "mRNAs containing the histone 3' stem-loop are degraded primarily by decapping mediated by oligouridylation of the 3' end." RNA 19, no. 1 (November 27, 2012): 1–16. http://dx.doi.org/10.1261/rna.034470.112.

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18

Huang, Fenix W. D., Wade W. J. Peng, and Christian M. Reidys. "Folding 3-Noncrossing RNA Pseudoknot Structures." Journal of Computational Biology 16, no. 11 (November 2009): 1549–75. http://dx.doi.org/10.1089/cmb.2008.0194.

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19

Vasserot, Alain P., Ingrid Hoffmann, Karim Tabiti, and Max L. Birnstiel. "3? Processing of histone RNA precursors." Molecular Biology Reports 14, no. 2-3 (1990): 211–12. http://dx.doi.org/10.1007/bf00360478.

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20

Hein, Pyae P., Murali Palangat, and Robert Landick. "RNA Transcript 3′-Proximal Sequence Affects Translocation Bias of RNA Polymerase." Biochemistry 50, no. 32 (August 16, 2011): 7002–14. http://dx.doi.org/10.1021/bi200437q.

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21

Hendricks, Robert T., Stacey R. Spencer, James F. Blake, Jay B. Fell, John P. Fischer, Peter J. Stengel, Vincent J. P. Leveque, et al. "3-Hydroxyisoquinolines as inhibitors of HCV NS5b RNA-dependent RNA polymerase." Bioorganic & Medicinal Chemistry Letters 19, no. 2 (January 2009): 410–14. http://dx.doi.org/10.1016/j.bmcl.2008.11.060.

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22

Young, Benjamin, and Thomas R. Cech. "Specificity for 3′,5′-linked substrates in RNA-catalyzed RNA polymerization." Journal of Molecular Evolution 29, no. 6 (December 1989): 480–85. http://dx.doi.org/10.1007/bf02602919.

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23

Didiano, D., and O. Hobert. "Molecular architecture of a miRNA-regulated 3' UTR." RNA 14, no. 7 (May 29, 2008): 1297–317. http://dx.doi.org/10.1261/rna.1082708.

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24

Ryan, K., A. Khleborodova, J. Pan, and X. P. Ryan. "Small molecule activators of pre-mRNA 3' cleavage." RNA 15, no. 3 (January 20, 2009): 483–92. http://dx.doi.org/10.1261/rna.1262509.

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25

Wilusz, J. E., and D. L. Spector. "An unexpected ending: Noncanonical 3' end processing mechanisms." RNA 16, no. 2 (December 9, 2009): 259–66. http://dx.doi.org/10.1261/rna.1907510.

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26

KUFEL, J. "3'-processing of yeast tRNATrp precedes 5'-processing." RNA 9, no. 2 (February 1, 2003): 202–8. http://dx.doi.org/10.1261/rna.2145103.

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27

Davila Lopez, M., and T. Samuelsson. "Early evolution of histone mRNA 3' end processing." RNA 14, no. 1 (November 12, 2007): 1–10. http://dx.doi.org/10.1261/rna.782308.

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28

Tanaka, N., and S. Shuman. "Structure-activity relationships in human RNA 3'-phosphate cyclase." RNA 15, no. 10 (August 18, 2009): 1865–74. http://dx.doi.org/10.1261/rna.1771509.

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29

DICHTL, B. "Functions for S. cerevisiae Swd2p in 3' end formation of specific mRNAs and snoRNAs and global histone 3 lysine 4 methylation." RNA 10, no. 6 (June 1, 2004): 965–77. http://dx.doi.org/10.1261/rna.7090104.

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30

Hollerer, Ina, and Andreas E. Kulozik. "The best of 25 years: mRNA 3′end processing." RNA 21, no. 4 (March 16, 2015): 640–41. http://dx.doi.org/10.1261/rna.050062.115.

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31

Winter, Julia, and Sven Diederichs. "Argonaute-3 activates the let-7a passenger strand microRNA." RNA Biology 10, no. 10 (October 2013): 1631–43. http://dx.doi.org/10.4161/rna.26424.

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32

Chaudhury, Arindam, George S. Hussey, and Philip H. Howe. "3'-UTR-mediated post-transcriptional regulation of cancer metastasis." RNA Biology 8, no. 4 (July 2011): 595–99. http://dx.doi.org/10.4161/rna.8.4.16018.

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33

Gamper, Howard, and Ya-Ming Hou. "tRNA 3′-amino-tailing for stable amino acid attachment." RNA 24, no. 12 (September 14, 2018): 1878–85. http://dx.doi.org/10.1261/rna.068015.118.

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34

Teramoto, T., Y. Kohno, P. Mattoo, L. Markoff, B. Falgout, and R. Padmanabhan. "Genome 3'-end repair in dengue virus type 2." RNA 14, no. 12 (October 24, 2008): 2645–56. http://dx.doi.org/10.1261/rna.1051208.

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35

Song, M. G., and M. Kiledjian. "3' Terminal oligo U-tract-mediated stimulation of decapping." RNA 13, no. 12 (September 27, 2007): 2356–65. http://dx.doi.org/10.1261/rna.765807.

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36

Remus, Barbara S., Agata Jacewicz, and Stewart Shuman. "Structure and mechanism ofE. coliRNA 2′,3′-cyclic phosphodiesterase." RNA 20, no. 11 (September 19, 2014): 1697–705. http://dx.doi.org/10.1261/rna.046797.114.

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37

Zheng, Dinghai, Hana Cho, Wei Wang, Xavier Rambout, Bin Tian, and Lynne E. Maquat. "3′READS + RIP defines differential Staufen1 binding to alternative 3′UTR isoforms and reveals structures and sequence motifs influencing binding and polysome association." RNA 26, no. 11 (August 12, 2020): 1621–36. http://dx.doi.org/10.1261/rna.076133.120.

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38

Kupsco, J. M., M. J. Wu, W. F. Marzluff, R. Thapar, and R. J. Duronio. "Genetic and biochemical characterization of Drosophila Snipper: A promiscuous member of the metazoan 3'hExo/ERI-1 family of 3' to 5' exonucleases." RNA 12, no. 12 (October 19, 2006): 2103–17. http://dx.doi.org/10.1261/rna.186706.

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39

Chen, Gang, Brent M. Znosko, Xiaoqi Jiao, and Douglas H. Turner. "Factors Affecting Thermodynamic Stabilities of RNA 3 × 3 Internal Loops†." Biochemistry 43, no. 40 (October 2004): 12865–76. http://dx.doi.org/10.1021/bi049168d.

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40

Dimock, Kenneth, Erling W. Rud, and C. Yong Kang. "3'-Terminal sequence of human parainfluenza virus 3 genomic RNA." Nucleic Acids Research 14, no. 11 (1986): 4694. http://dx.doi.org/10.1093/nar/14.11.4694.

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41

Dimock, Kenneth, Erling W. Rud, and C. Yong Kang. "3′-Terminal sequence of human parainfluenza virus 3 genomic RNA." Nucleic Acids Research 14, no. 18 (1986): 7512. http://dx.doi.org/10.1093/nar/14.18.7512.

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42

Zaug, A. J., J. Lingner, and T. R. Cech. "Method for Determining RNA 3' Ends and Application to Human Telomerase RNA." Nucleic Acids Research 24, no. 3 (February 1, 1996): 532–33. http://dx.doi.org/10.1093/nar/24.3.532.

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43

Nashimoto, M. "RNA heptamers that direct RNA cleavage by mammalian tRNA 3' processing endoribonuclease." Nucleic Acids Research 26, no. 11 (June 1, 1998): 2565–72. http://dx.doi.org/10.1093/nar/26.11.2565.

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44

Yi, MinKyung, and Stanley M. Lemon. "3′ Nontranslated RNA Signals Required for Replication of Hepatitis C Virus RNA." Journal of Virology 77, no. 6 (March 15, 2003): 3557–68. http://dx.doi.org/10.1128/jvi.77.6.3557-3568.2003.

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Abstract:
ABSTRACT We describe a mutational analysis of the 3′ nontranslated RNA (3′NTR) signals required for replication of subgenomic hepatitis C virus (HCV) RNAs. A series of deletion mutants was constructed within the background of an HCV-N replicon that induces the expression of secreted alkaline phosphatase in order to examine the requirements for each of the three domains comprising the 3′NTR, namely, the highly conserved 3′ terminal 98-nucleotide (nt) segment (3′X), an upstream poly(U)-poly(UC) [poly(U/UC)] tract, and the variable region (VR) located at the 5′ end of the 3′NTR. Each of these domains was found to contribute to efficient replication of the viral RNA in transiently transfected hepatoma cells. Replication was not detected when any of the three putative stem-loop structures within the 3′X region were deleted. Similarly, complete deletion of the poly(U/UC) tract abolished replication. Replacement of a minimum of 50 to 62 nt of poly(U/UC) sequence was required for detectable RNA replication when the native sequence was restored in a stepwise fashion from its 3′ end. Lengthier poly(U/UC) sequences, and possibly pure homopolymeric poly(U) tracts, were associated with more efficient RNA amplification. Finally, while multiple deletion mutations were tolerated within VR, each led to a partial loss of replication capacity. The impaired replication capacity of the deletion mutants could not be explained by reduced translational activity or by decreased stability of the RNA, suggesting that each of these mutations may impair recognition of the RNA by the viral replicase during an early step in negative-strand RNA synthesis. The results indicate that the 3′-most 150 nt of the HCV-N genome [the 3′X region and the 3′ 52 nt of the poly(U/UC) tract] contain RNA signals that are essential for replication, while the remainder of the 3′NTR plays a facilitating role in replication but is not absolutely required.
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45

Shimizu, S., M. Ohki, N. Ohkubo, K. Suzuki, M. Tsunoda, T. Sekiguchi, and A. Takenaka. "RNA splicing related proteins; crystal structure of RNA 3′-terminal phosphate cyclase." Acta Crystallographica Section A Foundations of Crystallography 64, a1 (August 23, 2008): C307. http://dx.doi.org/10.1107/s0108767308090181.

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46

Gruber, Andreas R., Georges Martin, Walter Keller, and Mihaiela Zavolan. "Cleavage factor Imis a key regulator of 3′ UTR length." RNA Biology 9, no. 12 (December 2012): 1405–12. http://dx.doi.org/10.4161/rna.22570.

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47

Lee, Dooyoung, Daechan Park, June Hyun Park, Jong Heon Kim, and Chanseok Shin. "Poly(A)-specific ribonuclease sculpts the 3′ ends of microRNAs." RNA 25, no. 3 (December 27, 2018): 388–405. http://dx.doi.org/10.1261/rna.069633.118.

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48

Nicholson, B. L., B. Wu, I. Chevtchenko, and K. A. White. "Tombusvirus recruitment of host translational machinery via the 3' UTR." RNA 16, no. 7 (May 27, 2010): 1402–19. http://dx.doi.org/10.1261/rna.2135210.

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49

Newman, M. A., V. Mani, and S. M. Hammond. "Deep sequencing of microRNA precursors reveals extensive 3' end modification." RNA 17, no. 10 (August 17, 2011): 1795–803. http://dx.doi.org/10.1261/rna.2713611.

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50

Harnisch, Christiane, Simona Cuzic-Feltens, Juliane C. Dohm, Michael Götze, Heinz Himmelbauer, and Elmar Wahle. "Oligoadenylation of 3′ decay intermediates promotes cytoplasmic mRNA degradation inDrosophilacells." RNA 22, no. 3 (January 19, 2016): 428–42. http://dx.doi.org/10.1261/rna.053942.115.

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