Dissertations / Theses on the topic 'RFLP'
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Šuranská, Hana. "Identifikace vinných kvasinek metodou PCR-RFLP." Master's thesis, Vysoké učení technické v Brně. Fakulta chemická, 2009. http://www.nusl.cz/ntk/nusl-216494.
Full textOlivová, Radana. "Optimalizace metody PCR-RFLP pro taxonomické zařazení kvasinek." Master's thesis, Vysoké učení technické v Brně. Fakulta chemická, 2009. http://www.nusl.cz/ntk/nusl-216560.
Full textWolf, Markus. "Markergestützte Vererbungsanalyse der Pollenfertilitätsrestauration bei Winterroggen (Secale cereale L.)." [S.l. : s.n.], 2001. http://www.bsz-bw.de/cgi-bin/xvms.cgi?SWB9818604.
Full textCavell, Jane Sarah. "Cytogenetic and RFLP analyses of somaclonal variation in Nicotiana tabacum." Thesis, University of Bath, 1989. https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.328517.
Full textDatta, Krishna. "Wide hybridisation and isozyme, RAPD and RFLP markers of #Corchorus' species." Thesis, Imperial College London, 1995. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.283339.
Full textDreyer, Felix. "Chromosomale Lokalisation von Restorergenen argentinischer und iranischer Herkunft in F2-Populationen von Winterroggen /." Aachen : Shaker, 2000. http://bvbr.bib-bvb.de:8991/F?func=service&doc_library=BVB01&doc_number=009029454&line_number=0001&func_code=DB_RECORDS&service_type=MEDIA.
Full textSANTOS, Lorena Cristina. "Caracterização molecular de Mycobacterium tuberculosis isolados de pacientes atendidos na cidade de Goiânia-GO, pela técnica de RFLP-IS6110." Universidade Federal de Goiás, 2008. http://repositorio.bc.ufg.br/tede/handle/tde/1826.
Full textTuberculosis is a serious public health problem all over the world. It has been demonstrated that different M. tuberculosis strains, characterized by the RFLP-IS6110 standard technique, have different virulence properties and antibiotic resistance. The aim of this study was to characterize M. tuberculosis strains isolated from patients attending two state reference hospitals of Goiânia-Goiás, using the RFLP-IS6110 technique. Positive cultures of M. tuberculosis sampled and isolated from January 2006 to June 2007 had their DNA extracted. A total of 142 viable DNA samples were analyzed, of which 126 samples presented an RFLP-IS6110 profile. Similarities comparisons between samples, as well as with literature reported profiles, were done with Bionumerics software (version 4.0). Forty three percent of the samples could be grouped in 24 clusters, when analyzed by the RFLP method, suggesting recent transmission among individuals belonging to the same cluster, however those patients did not present any epidemiological relationship, suggesting possible casual transmission between members of the same cluster. When compared with strain profile of the MDR-TB, three samples had grouped in the clade formed by families virulent. This study strengthens the importance of determining transmission routes not only within the state of Goiás but in the entire country, since there is the possibility of resistant strains transmissions.
A tuberculose é um grave problema de saúde pública em todo o mundo. Foi demonstrado que diferentes cepas de M. tuberculosis, caracterizadas pela técnica padrão mundial, RFLP-IS6110, possuem diferentes graus de virulência e resistência a antibióticos. O objetivo deste trabalho foi caracterizar as cepas de M. tuberculosis isoladas de pacientes atendidos em dois serviços de referência na cidade de Goiânia-Goiás no período de janeiro de 2006 a junho de 2007, utilizando a técnica RFLP-IS6110. Foram processadas para cultura 175 amostras de escarro com baciloscopias positivas e um total de 142 culturas positivas para M. tuberculosis tiveram seus DNA extraídos, estes foram posteriormente submetidos a técnica de southern blotting para obtenção de seus perfis de bandas de RFLP-IS6110. Destas, 126 amostras apresentaram um perfil de RFLP-IS6110 de fácil comparação de similaridade no programa BioNumerics (versão 4.0). As amostras analisadas pelo RFLP-IS6110 permitiram o agrupamento de 43% das amostras em 24 clusters, sugerindo transmissão recente entre indivíduos agrupados, contudo estes pacientes não apresentaram nenhuma relação epidemiológica, sugerindo possíveis transmissões casuais entre membros de um mesmo cluster. Quando comparamos as amostras com linhagens MDR descritas na literatura, três se agruparam no clado formado pelas famílias virulentas. Este estudo fortaleceu a importância de se traçar cadeias de transmissões bem como a necessidade de se manter um controle de imigrantes e emigrantes visto que há a possibilidade de disseminação de cepas resistentes.
Ip, Ka-fai. "Molecular epidemiological study of mycobacterium tuberculosis using IS6110-RFLP and MIRU typing /." View the Table of Contents & Abstract, 2005. http://sunzi.lib.hku.hk/hkuto/record/B31495473.
Full textZiebell, Kim. "Evaluation of PCR and PCR-RFLP protocols to identify the Shiga toxins." Thesis, National Library of Canada = Bibliothèque nationale du Canada, 2000. http://www.collectionscanada.ca/obj/s4/f2/dsk1/tape2/PQDD_0026/MQ51107.pdf.
Full textIp, Ka-fai, and 葉嘉輝. "Molecular epidemiological study of mycobacterium tuberculosis using IS6110-RFLP and MIRU typing." Thesis, The University of Hong Kong (Pokfulam, Hong Kong), 2005. http://hub.hku.hk/bib/B45010092.
Full textGray, Stephen James. "The genotyping of Neisseria meningitidis by restriction fragment length polymorphism (RFLP) analysis." Thesis, Manchester Metropolitan University, 1996. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.360085.
Full textLU, YUN-HAI. "Diversite moleculaire (rflp) et cartographie genomique chez la canne a sucre (saccharumspp. )." Paris 11, 1992. http://www.theses.fr/1992PA112398.
Full textLAURENT, VALERIE. "Etude de la diversite genetique du cacaoyer a l'aide des marqueurs rflp." Paris 11, 1993. http://www.theses.fr/1993PA112110.
Full textMalvárez, Macedo Gabriela. "Aplicação das metodologias PCR/RFLP para caracterização de fungos ectomicorrízicos em eucalipto /." reponame:Repositório Institucional da UFSC, 1999. https://repositorio.ufsc.br/handle/123456789/112290.
Full textRocha, Lidianne Leal. "Estudo de comunidades bacterianas de solos do Manguezal da Barra Grande, Icapuà â CE e SeleÃÃo de cepas com potencial para degradar hidrocarbonetos." Universidade Federal do CearÃ, 2008. http://www.teses.ufc.br/tde_busca/arquivo.php?codArquivo=2773.
Full textMendes, Lucas William. "Análise molecular das estruturas e diversidade de comunidades microbianas em solo de manguezal preservado da Ilha do Cardoso-SP." Universidade de São Paulo, 2009. http://www.teses.usp.br/teses/disponiveis/64/64133/tde-27042010-112316/.
Full textThe tropical mangroves are considered one of the most productive ecosystems of the world, being characterized by the high tax of organic matter and recycling of nutrients, that happens between the oceans and the terrestrial habitats. Although the mangroves are considered areas of environmental protection, the destruction of those ecosystems is progressive, due to industrial and port activities in the estuaries. In mangroves, the recycling of nutrients is directly related to the activities and to the diversity of microbial communities present in the soil. This work is part of a wider project inside of the program BIOTA/FAPESP, with respect to the studies of the biodiversity in the State of São Paulo and use of that biodiversity in a maintainable way. The objective of this work was to evaluate the structures and diversity of communities of Bacteria, Archaea and Fungi present in the soil of preserved mangrove of Ilha do Cardoso-SP. The samples were analyzed by T-RFLP and ARISA techniques, cloning and sequencing in order to obtain a characterization of the microbial communities structure of preserved mangrove area in comparison with the adjacent environments of restinga (tropical moist forest) and forest and also to a degraded mangrove. The results allowed concluding that the mangroves present exclusive characteristics, with the presence of distinct organisms, revealing a possible biotechnological potential to be explored. Additionally, the data revealed that the human action affected the structures of those communities in a way to be noticed a sensitive diversity decrease in the degraded mangrove, evidencing, this way, the importance of the ecosystem preservation
Björkbom, Tommy. "PCR-RFLP analys av mt-DNA hos Öring (Salmo trutta) i Gävleborgs län." Thesis, University of Gävle, Department of Electronics, Mathematics and Natural Sciences, 2010. http://urn.kb.se/resolve?urn=urn:nbn:se:hig:diva-7624.
Full textKleiner, Sven. "Entwerfen und Entwickeln mit Systems Engineering auf Basis des RFLP-Ansatzes in V6." Saechsische Landesbibliothek- Staats- und Universitaetsbibliothek Dresden, 2017. http://nbn-resolving.de/urn:nbn:de:bsz:14-qucosa-228610.
Full textSultan, Amal Hassan. "The development of molecular tools for identification of Leishmania species by PCR-RFLP." Thesis, University of Liverpool, 2008. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.479067.
Full textKleiner, Sven. "Entwerfen und Entwickeln mit Systems Engineering auf Basis des RFLP-Ansatzes in V6." TUDpress - Verlag der Wissenschaften GmbH, 2012. https://tud.qucosa.de/id/qucosa%3A30518.
Full textBesse, Pascale. "Identification clonale et analyse de la diversité génétique chez hevea brasiliensis par RFLP." Paris 11, 1993. http://www.theses.fr/1993PA112124.
Full textSZABO, VERONIQUE. "Cartographie des genes qui differencient mais et teosinte a l'aide de marqueurs rflp." Paris 11, 1991. http://www.theses.fr/1991PA112406.
Full textGrain, Françoise. "Étude des gènes du complexe majeur d'histocompatibilité : typage d'ovins par la méthode RFLP." Lyon 1, 1994. http://www.theses.fr/1994LYO1T183.
Full textNaamala, J., SK Jaiswal, and FD Dakora. "Microsymbiont diversity and phylogeny of native bradyrhizobia associated with soybean (Glycine max L. Merr.) nodulation in South African soils." Systematic and Applied Microbiology, 2016. http://encore.tut.ac.za/iii/cpro/DigitalItemViewPage.external?sp=1001977.
Full textFiore, Rebecca de Ara?jo. "Potencial de esp?cies florestais para remedia??o de substrato contaminado com atrazine e 2,4-D." UFVJM, 2014. http://acervo.ufvjm.edu.br:8080/jspui/handle/1/338.
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Funda??o de Amparo ? Pesquisa do estado de Minas Gerais (FAPEMIG)
Em se tratando da contamina??o de ecossistemas por res?duos de defensivos agr?colas, especial aten??o ? dada para a classe dos herbicidas, em fun??o do volume de aplica??o. Os que possuem mol?culas sol?veis pass?veis de contamina??o de len??is h?dricos subterr?neos se destacam pela abrang?ncia dos efeitos negativos. Nesse sentido, objetivou-se selecionar esp?cies vegetais arb?reas interessantes na remedia??o de ambientes contaminados por res?duos de atrazine e 2,4-D. Foram avaliados 36 tratamentos compostos pela combina??o de 12 esp?cies florestais [Inga marginata (ing?), Schizolobium parahyba (guapuruvu), Handroanthus serratifolius (ip? amarelo), Jacaranda puberula (carobinha), Cedrela fissilis (cedro), Calophyllum brasiliensis (landin), Psidium mirsinoides (goiabinha), Tibouchina glandulosa (quaresmeira), Caesalpinia f?rrea (pau-ferro), Caesalpinia pluviosa (sibipiruna), Terminalia arg?ntea (capit?o) e Schinopsis brasiliensis (bra?na)] e tr?s solu??es simulando o composto lixiviado (atrazine, 2,4-D e ?gua ? controle), com quatro repeti??es. Foram feitas 3 aplica??es dos herbicidas atrazine e 2,4-D com intervalos de 20 dias (aos 60, 80 e 100 dias ap?s o plantio), sendo cada aplica??o correspondente ? metade da dose comercial dos produtos. Para as avalia??es de crescimento foram mensuradas a altura da planta, o di?metro do caule, o n?mero de folhas, a ?rea foliar e o ac?mulo de biomassa seca. Na estimativa do efeito visual dos herbicidas ?s plantas avaliadas, optou-se pela atribui??o de notas em escala de intoxica??o. Para verifica??o de capacidade remediadora das esp?cies arb?reas procedeu-se a semeadura da esp?cie indicadora para indicativo do res?duo do herbicida no solo, (Cucumis sativus (L.)). Posteriormente em amostras de solo provenientes da esp?cie remediadora mais promissora procedeu-se a an?lise de polimorfismo de comprimento de fragmento de restri??o terminal (T-RFLP), com intuito de caracterizar a diversidade microbiana presente. As esp?cies florestais sobreviveram ? aplica??o dos herbicidas, sendo que umas se mostram mais sens?veis do que outras. O ing? apresentou bons resultados de remedia??o com o bioensaio, assim como o ip? amarelo, apesar da sua sensibilidade aos herbicidas. Observou-se aumento no conte?do relativo de macronutrientes para as plantas sob a??o dos herbicidas, na maioria dos tratamentos. Os resultados de T-RFLP confirmaram a diversidade microbiana diferenciada associada ? rizosfera de ing?, principalmente quando submetida ? a??o de atrazine.
Disserta??o (Mestrado) ? Programa de P?s-Gradua??o em Ci?ncia Florestal, Universidade Federal dos Vales do Jequitinhonha e Mucuri, 2014.
ABSTRACT In the case of contamination of ecosystems by residues of pesticides, special attention is given to the class of herbicides, according to the application volume. Those with likely contamination of underground water soluble molecules sheets are distinguished by breadth of negative effects. In this sense, the aim of this work was to select interesting woody plant species in the remediation of contaminated by residues of atrazine and 2,4-D environments. Were evaluated 36 treatments consisted of combinations of 12 forest species [Inga marginata (ing?), Schizolobium parahyba (guapuruvu), Handroanthus serratifolius (ip? amarelo), Jacaranda puberula (carobinha), Cedrela fissilis (cedro), Calophyllum brasiliensis (landin), Psidium mirsinoides (goiabinha), Tibouchina glandulosa (quaresmeira), Caesalpinia f?rrea (pau-ferro), Caesalpinia pluviosa (sibipiruna), Terminalia arg?ntea (capit?o) and Schinopsis brasiliensis (bra?na)] and three leachate solutions simulate the compound ( atrazine , 2,4 - D and water - control),with four replicates each. Three applications of atrazine and 2,4-D were made at intervals of 20 days (at 60, 80 and 100 days after planting), each application was corresponding to half of the recommended. Evaluations of growth were measured plant height, stem diameter, number of leaves, leaf area and dry biomass. In estimating the visual effect of herbicides on plants assessed, was opted for the grading scale of intoxication. To check remediation ability of tree species proceeded seeding indicator species for indication of herbicide residue in the soil (Cucumis sativus (L.)). Later in soil samples from the species most promising remedial proceeded to analysis of length polymorphism terminal restriction fragment (T-RFLP), in order to characterize the microbial diversity present. Forest species survived the herbicide application, and some are more sensitive than others. The ing? had good results with the remediation bioassay, as well as the ipe amarelo, despite their sensitivity to herbicides. Observed increase in the relative content of macronutrients for plants under the effect of herbicides in most treatments. The results of T-RFLP confirmed the differentiated microbial diversity associated with the rhizosphere of ing?, especially when subjected to the action of atrazine.
MEDEIROS, Rafael Acioli. "Caracterização da Leishmania infantum e Leishmania (Viannia) braziliensis em cães provenientes da Região Metropolitana do Recife, Pernambuco." Universidade Federal de Pernambuco, 2013. https://repositorio.ufpe.br/handle/123456789/12218.
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CAPES
As Leishmanioses são uma antropozoonose com ampla distribuição geográfica e ocorrência em torno de 88 países. Na Leishmaniose visceral americana (LVA), os cães domésticos são considerados os principais reservatórios da L. infantum no ambiente domiciliar. Diferentes perfis epidemiológicos da Leishmaniose Tegumentar Americana (LTA) têm sido caracterizados pela presença de casos humanos em áreas de colonizações antigas, sugerindo uma antropozoonose entre os animais domésticos por demonstrarem lesões tegumentares causadas pela Leishmania (Vianna) braziliensis. O diagnóstico das leishmanioses pode ser realizado através de métodos clínicos, epidemiológicos, parasitológicos, imunológicos e moleculares. Em áreas endêmicas o diagnóstico clínico e epidemiológico dessas zoonoses é dificultado pela similaridade clínica com outras doenças, tornando a utilização de exames laboratoriais de suma importância para confirmação diagnóstica. Em virtude da necessidade de diagnóstico especifico das leishmanioses na espécie canina, este trabalho tem como objetivo a utilização da PCR-RFLP, tendo como alvo o espaçador interno transcrito (ITS-1), para diferenciação das espécies de Leishmania em cães provenientes da Região Metropolitana do Recife. Foram coletadas 40 amostras de soro e medula de cães, 30 machos e 10 fêmeas, com idades entre 2 e 7 anos , que apresentaram suspeita clinica de leishmaniose quando atendidos no Hospital Veterinário da UFRPE. Foram realizados os testes diagnósticos de exame direto em medula e Reação indireta de imunoflorescência tanto para LTA quanto LVA. Além disso foi realizado a PCR-RFLP nas amostras de soro e urina para a pesquisa de L. infantum e L. (viannia) braziliensis. Dos 40 cães pesquisados 23 foram positivos para L.infantum e 17 foram negativos para as duas espécies pesquisadas. Quando comparado com os testes diagnósticos convencionais , 3 dos 23 cães foram positivos apenas na técnica molecular. Portanto, a ITS1-PCR RFLP pode ser uma importante ferramenta para o diagnostico e caracterização da leishmaniose canina em uma determinada região.
Santana, Maiele Cintra. "Análise da comunidade de fungos em áreas de monoculturas e consórcio de Eucalyptus grandis e Acacia mangium." Universidade de São Paulo, 2018. http://www.teses.usp.br/teses/disponiveis/11/11138/tde-03052018-173930/.
Full textThe fungi represent about 75% of the microbial biomass in forest areas, performing important functions, from the mineralization of the organic residues to the availability of nutrients to plants through mycorrhizal associations, which influences the nutrient cycling and, consequently, the growth of trees. The objective of this work was to evaluate the community of fungi of the soil, rhizosphere and root system of Eucalyptus grandis and Acacia mangium planted in monocultures and consortium, and to find explanations for the observed patterns through the correlation with physical and chemical soil attributes and soil depth. The samples were collected at the Experimental Station of Forest Sciences of Itatinga in 2016, when the plants were 2 years old. Samples were collected in four treatments: monocultures of E. grandis and A. mangium and consortia of E. grandis and A. mangium, in which trenches were constructed to collect samples in the 0-10, 10-20, 20 -50 and 50-100 cm deep. The physical and biological attributes of the soil and the chemical attributes of soil, rhizosphere and roots were characterized. For the mycorrhizal evaluation, the number of spores of arbuscular mycorrhizal fungi (AMF) and the rates of root colonization by AMF and ectomycorrhizal fungi were quantified. The morphology of arbuscular mycorrhizal and ectomycorrhizal (ECM) structures was evaluated. The structure of the soil and rhizosphere fungi community by was evaluated by the technique of Terminal restriction fragment length polymorphism (T-RFLP). For this, the DNA was amplified using primers ITS1f-FAM and ITS4 and restriction of the fragments was performed with the enzyme HaeIII. The abundance of ITS gene copies of soil and rhizosphere was quantified by quantitative PCR (qPCR), using primers ITS1f and 5.8s. The physical, chemical and biological attributes had few variations among the evaluated treatments, being the greatest differences found between the depths. The number of spores (<29) and mycorrhizal colonization rates (<48%) were low in all treatments, and reduced with increasing depth. A. mangium plants did not form FMA. In the roots of E. grandis, there was no formation of arbuscules, but we found the presence of hyphal coils, mycorrhizal structures of the Paris type. The anatomy of the ECM confirmed the colonization of these fungi in the roots of the studied plants. The qPCR showed higher abundance of ITS genes in the rhizosphere in relation to the soil, as well as in the superficial layers (0-10 cm) in relation to the deeper ones (10 cm below). The Principal Coordinates Analysis revealed differences in the structure of the fungal communities in the treatments studied, especially for the rhizosphere region, differentiating the fungal profile of the E. grandis monoculture from the other treatments, as well as the influence of A. mangium on the structure of the community. The redundancy analysis showed the influence of some chemical soil attributes on the rates of colonization and community structuring. Thus, it is concluded that in a consortium system, one plant species seems to be more influential than the other in structuring the fungal community, and this influence is more evident in the rhizosphere. In addition, chemical attributes are important factors in the organization of the fungal community.
Abreu, Daniel Paiva Barros de. "Caracteriza??o fenot?pica, genot?pica e perfil de sensibilidade a antif?ngicos de isolados cl?nicos de c?es e gatos pertencentes ao Complexo Sporothrix schenckii oriundos do estado do Rio de Janeiro." Universidade Federal Rural do Rio de Janeiro, 2017. https://tede.ufrrj.br/jspui/handle/jspui/2031.
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Conselho Nacional de Desenvolvimento Cient?fico e Tecnol?gico - CNPq
Dimorphic fungi belonging to Sporothrix schenckii complex are responsible for sporotrichosis, important fungal infection with worldwide distribution. The anthropozoonotic characteristic is of high relevance in the state of Rio de Janeiro, where an increasing in the number of cases in human patients was observed in the last decades, highlighting the role of domestic cat as a transmitter agent. The description of new species compounding de Sporothrix genus, based on phenotypic and genotypic evaluations, showed the involvement of other members of this group in the epidemic status installed in Rio de Janeiro. The verification of strains resistant to itraconazole, a widely used antifungal in human and animal medicine for the treatment of this mycosis, is an important factor that possibly results in relapse and therapeutic failure of this disease. The present study aimed to identify, by phenotypic and molecular approaches, 168 isolates obtained from the routine of Veterinary Clinical Microbiology Laboratory ? UFRRJ, and the determination of minimal inhibitory concentration (MIC) for amphotericin B (AMB), ketoconazole (KTC), itraconazole (ITC), terbinafine (TRB) and voriconazole (VRC). Based on morphophysiological characteristics it was possible to identify 159 (94.64%) isolates as S. brasiliensis and 9 (5.36%) as S. luriei. However, applying PCR-RFLP of calmodulin 168 (100%) samples were identified as S. brasilensis. The susceptibility test, based on M38-A2 document (CLSI), showed that TRB was the most effective antifungal tested, followed by ITC, KTC, AMB, and VRC, respectively. No ITC resistant isolates were detected in the present study. These results demonstrate that the identification reached only by phenotypic evaluation is not recommended for the characterization of Sporothrix schenckii complex components. It also proves the predominance of S. brasiliensis in other regions of RJ state. The better efficacy of TRB added to the absence of isolates resistant to ITC support the necessity of pharmacodynamics and pharmacokinetics studies for the optimization of the therapeutic protocols. More information about isolates from dogs and cats correlated with the species from the S. schenckii complex, as well as in vitro antifungal efficacy evaluation provide knowledge about therapeutic alternatives. In this way, the present study also provides relevant information about the endemic status in Rio de Janeiro and important data for the treatment of human and animal sporotrichosis.
Fungos dim?rficos pertencentes ao complexo Sporothrix schenckii s?o respons?veis pela esporotricose, importante infec??o f?ngica que apresenta distribui??o mundial. Sua conhecida caracter?stica antropozoon?tica apresenta grande relev?ncia no estado do Rio de Janeiro, onde se verifica aumento significativo no n?mero de pacientes humanos e animais acometidos pela doen?a nas ?ltimas d?cadas, destacando-se em tais casos o papel do felino como agente transmissor. A descri??o de novas esp?cies pertencentes ao g?nero Sporothrix, baseada em caracter?sticas fenot?picas e genot?picas, demonstrou o envolvimento de outros componentes deste g?nero na epidemia instalada no estado. A verifica??o de isolados resistentes a itraconazol, antif?ngico amplamente utilizado na medicina humana e veterin?ria para o tratamento da doen?a, ? fato preocupante e tem poss?vel associa??o a recidivas e falhas terap?uticas. O presente estudo objetiva a identifica??o fenot?pica e genot?pica de 168 exemplares oriundos de pacientes felinos e caninos, obtidos na rotina do Diagn?stico Microbiol?gico Veterin?rio - UFRRJ, com determina??o da Concentra??o Inibit?ria M?nima (CIM) frente ? anfotericina B (AMB), cetoconazol (KTC), itraconazol (ITC), terbinafina (TRB) e voriconazol (VRC). A partir de caracter?sticas morfofisiol?gicas foi poss?vel identificar 159 (94,64%) isolados como S. brasiliensis e 9 (5,36%) como S. luriei. Contudo, metodologias moleculares identificaram 168 (100%) S. brasiliensis, a partir de PCR-RFLP em gene respons?vel pela s?ntese de calmodulina. O teste de sensibilidade, realizado a partir do documento M38-A2 (CLSI) determinou maior efic?cia in vitro para TRB, seguido por ITC, KTC, AMB e VRC, respectivamente. Cepas resistentes a ITC n?o foram detectadas no presente estudo. Tais resultados demonstram que a identifica??o alcan?ada exclusivamente por m?todos fenot?picos n?o ? recomendada para caracteriza??o de componentes do complexo Sporothrix schenckii. Comprova-se ainda a predomin?ncia de S. brasiliensis em outras regi?es do estado do RJ. A maior efic?cia de TRB, somada a aus?ncia de exemplares resistentes a ITC, refor?a a necessidade de estudos farmacodin?micos e farmacocin?ticos para otimiza??o dos protocolos terap?uticos atualmente utilizados. Obten??o de maiores informa??es acerca dos isolados provenientes de amostras provenientes de c?es e gatos correlacionados a esp?cies dentro do complexo S. schenckii, bem como a avalia??o da efic?cia in vitro de antif?ngicos proporcionam conhecimento sobre alternativas terap?uticas. Tais informa??es auxiliam no entendimento do quadro instalado no estado do Rio de Janeiro e fornece dados de grande utilidade para o tratamento humano e veterin?rio
Burger, Joachim A. "Sequenzierung, RFLP-Analyse und STR-Genotypisierung alter DNA aus archäologischen Funden und historischen Werkstoffen." [S.l. : s.n.], 2000. http://deposit.ddb.de/cgi-bin/dokserv?idn=961822848.
Full textMiao, Yu. "Development and use of T-RFLP for studies of take-all infection of wheat." Thesis, University of Nottingham, 2008. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.490991.
Full textSpengler, C. J. "PCR-RFLP typification of microbes used in the production of a fermented fish product." Thesis, Stellenbosch : Stellenbosch University, 2001. http://hdl.handle.net/10019.1/52397.
Full textENGLISH ABSTRACT: The preservation of various fresh fish products is achieved by either smoking, salting, canning, freezing or fermenting a highly perishable raw product. Since many of these facilities are not readily available, the use of fermentation as a means of preserving the product has been extensively practiced. However, the fermentation of fish is a time consuming practise and only by accelerating the process would it be possible to ensure the production of a more cost effective and readily available safe end-product. The quality of the fermented fish product is partially determined by the fermentation conditions and the metabolic activity of the microbes present. The rapid identification of the microbes present during the fermentation would enable the selection of possible starters to ensure an accelerated production of high quality fermented fish products. This study was thus undertaken to develop identification fingerprints for bacteria isolated from fermented fish products. A 1300 bp fragment of the 16S rRNA genes of each of the bacteria previously isolated was successfully amplified using the PCR technique. The isolates included strains of the genera Bacillus, Staphylococcus, Sphingomonas, Kocuria, Brevibacillus, Cryseomonas, Vibrio, Stenotrophomonas and Agrobacterium. The data obtained can, therefore, be used in the identification of these microbes isolated from other similar fermented fish products. The fingerprints could also be used to assist in determining the dominant microbial populations responsible for the characteristic qualitative changes occurring in the fish product during fermentation. The microbial composition of a fermenting fish product partially determines the quality of the end-product, therefore, the use of selected bacterial starters could result in the accelerated production of a microbial safe fermented fish product. A further objective of this study was to accelerate the production of a fermented fish product by inoculating macerated trout with either selected lactic acid bacteria (LAB) or with selected bacteria with high proteolytic activity over a 30 day fermentation period. The LAB included a combination of Lactobacillus plantarum, Lactococcus diacetylactis and Pediococcus cerevisiae strains, whereas the bacteria with high proteolytic activity included strains of Kocuria varians, Bacillus subtilis, two strains of B. amyloliquefaciens and a combination of these bacterial species. The quality of the fermented product was determined using changes in product pH, titratable acidity (%TA) and free amino nitrogen (FAN) formation as efficiency parameters. The data obtained during the fermentation of the macerated trout showed that the selected starters did not have a significant effect on the pH decrease in the product over a 30 day fermentation period. The LAB strains did not have a significant effect on the %TA of the fermenting fish product, yet the presence of these bacteria appeared to limit the FAN production in the product. The bacteria with high proteolytic activity resulted in slightly enhanced %TA values and a higher FAN content in the fermented product. It was also determined that the LAB and Kocuria varians, in contrast to the Bacillus spp. inoculums, did not survive the fermentation conditions well, possibly due to the low pH environment. The presence of the starter bacteria in the fermenting fish mixture at the end of the fermentation was also successfully determined with the use of the PCR-RFLP technique. The fermented fish product, obtained at the end of the fermentation period, had a good aroma and compared favourably to similar commercially available fermented fish products. The use of different microbial starters could in future enable the production of a diverse range of high quality products, which could be produced and marketed locally.
AFRIKAANSE OPSOMMING: Die preservering van ‘n verskeidenheid vars vis produkte word bereik deur die hoogs bederfbare produk te rook, te sout, te blik, te vries of te fermenteer. Aangesien baie van hierdie fasiliteite nie geredelik beskikbaar is nie, is die gebruik van fermentasie as ‘n preserverings metode al ekstensief beoefen. Die fermentasie van vis is egter 'n tydsame proses en slegs deur die versnelling van die proses sal dit moontlik wees om die produksie van ‘n meer koste effektiewe en geredelike beskikbare veilige eindproduk te verseker. Die kwaliteit van die gefermenteerde vis produk word gedeeltelik bepaal deur die fermentasie kondisies en die metaboliese aktiwiteit van die mikrobes teenwoordig. Die vinnige identifikasie van die mikrobes teenwoordig gedurende die fermentasie sal die seleksie van moontlike suursels om die versnelde produksie van hoë kwaliteit gefermenteerde vis produkte moontlik maak. Hierdie studie is dus onderneem om identifikasie vingerafdrukke vir bakteriee wat gei'soleer is van gefermenteerde vis produkte moontlik te maak. ‘n 1300 bp fragment van die 16S rRNA gene van elkeen van die bakteriee wat voorheen gei'soleer is, is suksesvol geamplifiseer deur die PCR tegniek. Die isolate sluit in stamme van die genera Bacillus, Staphylococcus, Sphingomonas, Kocuria, Brevibacillus, Cryseomonas, Vibrio, Stenotrophomonas en Agrobacterium. Die data kan dus gebruik word in die identifikasie van hierdie mikrobes as dit gei'soleer word van ander gefermenteerde vis produkte. Die vingerafdrukke kan ook gebruik word om die dominante mikrobiese populasies wat verantwoordelik is vir die kenmerklike kwalitatiewe veranderinge wat plaasvind in die vis produk gedurende die fermentasie, te identifiseer. Die mikrobiese samestelling van ‘n fermenterende vis produk bepaal gedeeltelik die kwaliteit van die eindproduk, daarom kan die gebruik van geselekteerde bakteriese suursels die versnelde produksie van ‘n mikrobies veilige gefermenteerde vis produk teweeg bring. ‘n Verdere doel van hierdie studie was om die produksie van ‘n gefermenteerde vis produk te versnel deur fyngemaakte forel met of geselekteerde melksuurbakteriee of met geselekteerde bakteriee met hoë proteolitiese aktiwiteit te inokuleer oor ‘n 30 dag fermentasie periode. Die melksuurbakteriee het ingesluit ‘n kombinasie van Lactobacillus plantarum, Lactococcus diacetylactis en Pediococcus cerevisiae, terwyl die bakterieë met hoë proteolitiese aktiwiteit stamme van Kocuria varians, Bacillus subtilis, twee stamme van Bacillus amyloliquefaciens en ‘n kombinasie van hierdie bakteriese stamme ingesluit het. Die kwaliteit van die gefermenteerde produk is bepaal deur die veranderinge in die pH, titreerbare suur (%TS) en vrye amino stikstof (VAS) vorming van die produk as effektiwiteits parameters te gebruik. Die data wat verkry is gedurende die fermentasie van die fyngemaakte forel het gedui daarop dat die geselekteerde suursels nie ‘n merkwaardige effek op die afname in pH in die produk oor ‘n 30 dag fermentasie periode het nie. Die melksuurbakteriee het nie ‘n merkwaardige effek op die %TS van die gefermenteerde vis produk gehad nie, terwyl dit geblyk het dat die teenwoordigheid van hierdie bakterieë die produksie van VAS in die produk belemmer het. Die bakteriee met hoe proteolitiese aktiwiteit het ‘n effense verhoogde %TS en ‘n hoër VAS inhoud in die gefermenteerde produk veroorsaak. Dit is ook bepaal dat die melksuurbakteriee en Kocuria varians, in teenstelling met die Bacillus spp. inokulums, nie die fermentasie kondisies goed oorleef het nie, moontlik as gevolg van die lae pH omgewing. Die teenwoordigheid van die suursel bakteriee in die fermenterende vis mengsel aan die einde van die fermentasie is ook suksesvol bepaal met die PKR-RFLP tegniek. Die gefermenteerde vis produk, verkry aan die einde van die fermentasie periode, het ‘n goeie aroma gehad en het goed vergelyk met soortgelyke kommersieel beskikbare gefermenteerde vis produkte. Die gebruik van verskillende mikrobiese suursels kan in die toekoms die produksie van ‘n diverse reeks hoë kwaliteit produkte wat plaaslik geproduseer en bemark kan word moontlik maak.
Okuda, Liria Hiromi. "Orthopoxvirus bovino: inquérito soroepidemiológico e caracterização de amostras pela técnica de PCR e RFLP." Universidade de São Paulo, 2013. http://www.teses.usp.br/teses/disponiveis/10/10134/tde-09122013-152339/.
Full textIn Brazil, cases of rash illness in cattle and humans have been reported in several regions whose causal agent is the vaccinia virus belonging to the genus Orthopoxirus (OPV) family Poxviridae. Classically, cowpox is caused by Cowpoxvirus, however, other poxviruses such as vaccinia virus may develop same clinical signs. In addition to compromising the production chain of milk, as it hampers milking, predisposes to mastitis and discard the product, also it is a zoonosis and is currently included in the differential diagnosis of vesicular disease. The origin of these cases as well as the epidemiology of the disease is still unknown. Thus, the aim of the present study 1) assess the serum prevalence of OPV in cattle herds circuit seven Vale do Paraíba and associate the possible risk factors involved in disease transmission, 2) identify and characterize the presence of OPV in samples suspected vesicular disease in the period 2007-2009, from various regions of Brazil using conventional techniques and molecular electron microscopy, virus isolation, PCR and RFLP; 3) Sequencing and phylogenetic analysis of the samples positive for OPV. For epidemiological survey were analyzed 76 properties in the region of Vale do Paraíba, São Paulo, randomly selected, totaling 619 animals, stratified in females more than two years. The serum prevalence of OPV in the Paraíba Valley was 32.3% (200/619) by virus neutralization. Positive association was found for presence of wild animals. The virological diagnosis were analyzed 227 samples of epithelium, negative for other vesicular diseases. Met frequency of 63.4% (144/227) positive for OPV in practically all regions of the country. RFLP analysis revealed default profile for the vaccinia virus. The sequencing of the isolates confirmed that vaccinia virus strain is circulating and is clustered in group I isolates of Brazilians vaccinia.
Alvarez, Vega Luis Guillermo. "Detección de Staphylococcus pseudintermedius y Staphylococcus aureus aislados de piodermias caninas mediante PCR-RFLP." Bachelor's thesis, Universidad Nacional Mayor de San Marcos, 2019. https://hdl.handle.net/20.500.12672/11838.
Full textUniversidad Nacional Mayor de San Marcos (Lima). Vicerrectorado de Investigación y Posgrado
Tesis
Georges, Agnès. "Chlamydia Trachomatis et tetracyclines : étude de souches récidivantes par PCR-RFLP du gène omp1." Bordeaux 2, 1994. http://www.theses.fr/1994BOR2P094.
Full textPereira, Lucas Carlos Gomes. "Importância dos polimorfismos C3435T e C1236T do gene de resistência a múltiplas drogas (MDR1) na resposta ao tratamento com mesilato de imatinib em pacientes com Leucemia Mielóide Crônica (LMC)." Universidade Federal de Goiás, 2013. http://repositorio.bc.ufg.br/tede/handle/tede/3100.
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Made available in DSpace on 2014-09-19T12:56:29Z (GMT). No. of bitstreams: 2 Dissertacao Lucas C G Pereira.pdf: 869540 bytes, checksum: 9c40d119515c83b8b52606c52be6703d (MD5) license_rdf: 23148 bytes, checksum: 9da0b6dfac957114c6a7714714b86306 (MD5) Previous issue date: 2013-05-02
In recent years, the evolution of health expenditures and specifically drugs, has worried governments. Among the various specialties, oncology is among those dealing with the greatest difficulties in the management of drug therapy. It is known that patients treated with various drugs have variability of response and susceptibility to drug toxicity. In present work, we study the role of Multiple Drug Resistance gene (MDR1) polymorphisms C1236T and C3435T frequencies and response to treatment with imatinib mesylate in 96 patients with chronic myeloid leukemia (CML). A total of 96 patients with CML were treated according to the Brazilian National Cancer Institute (INCA) guidelines and the blood samples were collected for genotyping. Genomic DNA was extracted and C1236T and C3435T polymorphisms genotyping was performed by the polymerase chain reaction with restriction fragment length polymorphism (PCR-RFLP), which detects a variation in length of a DNA fragment generated (370pb and 340pb) by a specific endonuclease in a specific site of the genome (HaeIII and MboI). Of the 96 CML samples, 31 samples were homozygous (CC), 13 homozygous (TT) and 52 heterozygous (CT) for exon 12 (1236). For the exon 26 (3435), 35 were homozygous (CC), 12 homozygous (TT) and 49 heterozygotes (CT). All frequencies for both polymorphisms were in Hardy-Weinberg equilibrium (p = 0.229 and q = 0.414). We found percentage association between polymorphisms and their distribution in different populations, and the response to treatment both cytogenetic and molecular difference was not statistically significant (p <0.05) when compared to age and sex presented response by patients and also no statistical difference (p <0,050). We conclude that the observed allele frequency for exons 1236 were 59.4% for C and 40.6% for T and the frequencies for the exon 3435 were 62.0% for C and 38.0% for T. That the relationship between the frequencies of polymorphisms of MDR1 in populations of different geographic locations, can provide tools that help in choosing a more appropriate and effective treatment of CML.
Neste estudo, o papel dos polimorfismos C1236T e C3435T do gene de Resistência a Múltiplas Drogas (MDR1) foram investigados em relação à frequência e a resposta ao tratamento com imatinibe em pacientes com leucemia mielóide crônica (LMC). Um total de 96 pacientes com LMC foram tratados de acordo com as diretrizes do Instituto Nacional do Câncer (INCA) e amostras de sangue foram coletadas para genotipagem do gene MDR (Resistência à Multiplas Drogas). O DNA genômico foi extraído e a genotipagem dos polimorfismos C1236T e C3435T foi realizada por meio da reação em cadeia da polimerase com fragmentos de restrição (PCR-RFLP), que detectou uma variação no comprimento de um fragmento de DNA gerado (370pb e 340pb) por uma endonuclease específica em um sítio específico do genoma (HaeIII e Mbol). Analisando as 96 amostras de pacientes para o polimorfismo no éxon 12 (1236) com LMC, 31 amostras apresentaram homozigose (CC), 13 homozigose (TT) e 52 heterozigose (CT). Para o estudo do polimorfismo no éxon 26 (3435), 35 foram homozigotas (CC), 12 homozigotas (TT) e 49 heterozigotas (CT). Todas as frequências para ambos os polimorfismos apresentaram-se em equilíbrio de Hardy-Weinberg (p = 0,229 e q = 0,414). Foi encontrada associação do percentual dos polimorfismos estudados em relação à distribuição dos mesmos em grupos de diferentes localizações geográficas, e sobre a resposta ao tratamento tanto citogenética e molecular, não houve diferença estatísticamente significante (p<0,05), quando foi comparado à idade e ao gênero apresentados pelos pacientes e a resposta também não houve diferença estatística (p<0,05). Conclui-se que as frequências alélicas observadas para o éxon 1236 foram de 59,4% para C e 40,6% para T e as frequências para o éxon 3435 foram de 62,0% para C e 38,0% para T e que a relação entre as frequências de polimorfismos de MDR1 nas populações de diferentes localizações geográficas, pode fornecer ferramentas que auxiliem na escolha de um tratamento mais adequado e eficaz da LMC.
Vitaliano, Sérgio Netto. "Isolamento e caracterização biológica e genotípica de Toxoplasma gondii em animais selvagens do Brasil." Universidade de São Paulo, 2012. http://www.teses.usp.br/teses/disponiveis/10/10134/tde-04102012-182312/.
Full textToxoplasma gondii is an intracellular protozoan parasite that infects almost all warmblooded animals, including humans. Although studies indicate that wild animals are frequently positive for antibodies anti-T. gondii, the role of wild life in the epidemiology of this parasite is not well understood nor the susceptibility of different wild species. The present study aimed to isolate T. gondii from free-living and captive wild birds and mammals from different locations from Brazil, to perform the genotipic characterization of T. gondii found in the analyzed tissue samples and to detect aintibodies anti-T. gondii in samples which were possible to obtain the serum. Serology was performed in 54 serum samples from different species of wild birds and mammals by the Modified Agglutination Test (MAT). From this total, 18 samples (five from birds and 13 from mammals) were seropositive for antibodies anti-T. gondii. For the isolation of the parasite, mice bioassay was performed. Brain and heart homogenates were submitted to peptic digestion and were inoculated in groups of five mice per animal sampled. Tissues of mice that died were examined for the presence of T. gondii. Mice were bled six weeks post-inoculation, and their sera were tested for anti-T. gondii antibodies by MAT. Surviving mice were euthanized two months after the inoculation and their brains were examined for the presence of T.gondii tissue cysts. T. gondii was isolated in 18 wild animals (16 from different species of mammals and two from birds) from different locations. T. gondii was isolated from one burrowing owl (Athene cunicularia), one lineated woodpecker (Dryocopus lienatus), three collared anteater (Tamandua tetradactyla), one hoary fox (Pseudalopex vetulus), one maned wolf (Chrysocyon brachyurus), one oncilla (Leopardus tigrinus), one opossum (Didelphis marsupialis), one paca (Cuniculus paca), three nine-banded armadillo (Dasypus novemcinctus), two six-banded armadillo (Euphractus sexcincticus) and three white-lipped peccary (Tayassu pecari). Sixteen of the 18 isolates were lethal to 100% of inoculated mice. The genotypic characterization was performed using 12 PCR-restriction fragment length polymorphism (RFLP) Primary tissue samples which were positive in a trial PCR were also submitted to genotypic characterization. It was possible, by PCR/RFLP, to obtain the complete genotype of 22 samples, 15 from isolates and seven from primary tissue samples. It was not possible to accomplish the complete genotypic characterization in three isolates; one burrowing owl, one opossum and one sixbanded armadillo. In this 22 samples characterized, a total of 17 different genotypes were found with 13 of them described for the first time. Mortality of infected mice was compared between the different alleles of the marker CS3 in the 15 genotypes originated from isolates, which seven were type I, six were type II and alleles u-1 and u-3 were found in one isolate each. All the isolates presented 100% of mortality in infected mice.
Andrade, Vanessa da Silva Silveira. "Polimorfismos genéticos, susceptibilidade e resposta ao tratamento em crianças portadoras de leucemia linfoblástica aguda." Universidade de São Paulo, 2006. http://www.teses.usp.br/teses/disponiveis/17/17135/tde-27082007-085802/.
Full textThe leukemias are the most common type of cancer in children, representing above 30% of all the pediatric malignancies. Among them, the acute lymphoblastic leukemia (ALL) is the most frequent, with a percentage of 75% of the total pediatric cases of leukemia. Its occurrence is closely related to the exposure to chemical, physical and biological environmental factors and so maternal factors either, such as drugs, alcohol even in the uterine phase or after birth. Despite all the investigations made until now, little is known about the leucemogenous process, in particular about the importance of herdable genetic susceptibility and environmental factors. The citochrome P450 enzymes, as well as other phase I and II enzymes are involved on the biotransformation process of a huge variety of xenobiotics on food, smoke, alcohol, drugs and chemical poluents. Polymorphisms on these genes have been associated to the increased susceptibility to different kind of adult cancers and hematological diseases in adults and child. Similarly, the differential capacity of children with ALL to metabolize carcinogen compounds and chemotherapy drugs, witch is influenced by polymorphisms on genes that encode metabolizing enzymes, can modify the individual risk of relapse and therapy response. Thus, molecular epidemiological investigations in children with acute leukemia became so important to help clinicians answer questions about the etiology and the right mechanisms that induce this malignance and about the adverse responses to therapy found in huge number of patients, trying to reach more specific treatments. So, the present study objective is to evaluate the polymorphism frequency on the following genes CYP2D6, EPHX1 and MPO (xenobiotic metabolizing genes) and TS gene (DNA synthesis) in patients with ALL and in controls individuals. We analyzed 132 patients and 300 health controls by PCR-RFLP technique. The CYP2D6*3 variant was more frequent on the case group. The EPHX1*2 and the triple repeat (3R) of TS gene were more frequent on the control group. The heterozygous genotype for the TS gene and the homozygous for the MPO gene were more prevalent on the female group, suggesting an association of these polymorphisms with the gender. We did not find any association with the studied polymorphisms and the response to therapy. Beyond these data, is it possible to suggest an association of these polymorphisms and the leukemia development susceptibility, emphasizing the importance of the polymorphism determination for prognosis and for the prevention, related to the increased risk of the diseases related to environmental exposure.
Costa, Nathalie Borges. "ANÁLISE DO POLIMORFISMO DO GENE CYP1A1m1 EM PACIENTES COM GLAUCOMA PRIMÁRIO DE ÂNGULO ABERTO DE UMA CLÍNICA OFTALMOLÓGICA EM GOIÂNIA, GO." Pontifícia Universidade Católica de Goiás, 2011. http://localhost:8080/tede/handle/tede/3425.
Full textMade available in DSpace on 2016-08-18T13:40:01Z (GMT). No. of bitstreams: 1 Nathalie Borges Costa.pdf: 1419823 bytes, checksum: 9601be4b45901e83f91a699e9111d75f (MD5) Previous issue date: 2011-12-07
Glaucoma encompasses a group of eye diseases characterized by retinal ganglion cell damage, optical nerve damage and visual field loss. It is a complex optic neuropathy of genetically heterogeneity which can lead to irreversible blindness. The visual field loss is a late manifestation symptom, therefore it is not a reliable symptom to detect glaucoma in its early stages. It is the second biggest cause of blindness worldwide, responsible for 12% of all the cases of complete vision loss, while cataracts are responsible for 48% of reversible blindness worldwide. A positive family history plays an important role as a risk factor for primary openangle glaucoma development. This is the most common form of glaucoma and it typically occurs after 40 years old of age. If the disease is neither detected nor treated properly the risk of blindness is higher. Patients with a positive family history or patients with mutations in genes that are known to be associated with glaucoma should have medical attention in order to prevent later complications. In this way it is extremely important to seek new genes that could be related to glaucoma. Up to this time three genes have been associated with primary open-angle glaucoma, the myocilin gene (MYOC), the optineurin gene (OPTN) and the repeat domain 36 gene (WDR36). The CYP1A1 gene, located at 15q22-q24, encodes an enzyme which is involved in the conversion of chemical substances into highly reactive species leading to unwanted cell damage, cell death or mutation. The m1 polimorphism is related to a high rate of enzyme activity and it comprises increased lung cancer susceptibility. The objective of this paper is to analyze the correlation of 100 patients with primary open-angle glaucoma and 52 normal controls by the RFLP method (Restriction Fragment Length polymorphism). The frequency of the homozygous wild-type (w1/w1) of CYP1A1 gene among patients with primary open-angle glaucoma (n=100) was 16%, for the genotype w1/m1 the frequency of was 77% and for m1/m1 it was 7%. Among the control group (n=52) the frequency of the homozygous wild-type (w1/w1) of CYP1A1 gene was 54%, the frequency of w1/m1 was 46% and m1/m1 was 0%. The qui-square test ( 2) considered the result statistically significant (P<0,0001), and this suggests that the CYP1A1m1 polymorphism is associated with primary open-angle glaucoma.
Glaucoma engloba inúmeras doenças oculares que têm como característica a lesão das células ganglionares da retina, com conseqüente lesão do nervo óptico e perda do campo visual. É considerada uma neuropatia óptica complexa e geneticamente heterogênea, levando à cegueira irreversível. A perda do campo visual é uma manifestação tardia do glaucoma, e portanto não é particularmente adequada para a detecção da doença em seu início. É a segunda causa de cegueira no mundo, respondendo por 12% dos casos, ficando atrás apenas da catarata (48%). A história familiar positiva é um importante fator de risco para o desenvolvimento do glaucoma primário de ângulo aberto, que é a forma mais comum da doença e que se manifesta principalmente após os 40 anos. O glaucoma, quando não diagnosticado e, portanto não tratado, pode levar a um risco maior de cegueira. Sendo assim, indivíduos com histórico familiar ou mesmo alterações nos genes associados ao glaucoma devem ter uma atenção médica mais dirigida aos seus aspectos preventivos, por isso a importância da procura de novos genes associados ao glaucoma. Até o momento foram identificados três genes relacionados ao glaucoma primário de ângulo aberto, o gene myocilin (MYOC ), o optineurin (OPTN) e o gene de domínio de repetição WD 36 (WDR36). O gene CYP1A1, localizado no cromossomo 15q22-q24, codifica enzima que está envolvida na conversão de produtos químicos em moléculas altamente reativas, que podem produzir dano celular indesejado, morte celular ou mutações. O polimorfismo m1 está associado a uma maior atividade enzimática, tendo sido referido como fator genético de suscetibilidade para o câncer de pulmão. Este trabalho teve como objetivo verificar a possível associação entre 100 doentes com glaucoma primário de ângulo aberto e 52 controles por RFLP (polimorfismo de comprimento de fragmentos de restrição). A frequência do gene CYP1A1 entre os pacientes com glaucoma primário de ângulo aberto (n=100) para o genótipo homozigoto selvagem w1/w1 foi de 16%; 77% para o genótipo w1/m1 e 7% para o genótipo m1/m1. Entre os pacientes do grupo controle (n=52) a freqüência do gene CYP1A1 foi de 54% para o genótipo w1/w1, sendo a freqüência para o genótipo w1/m1 igual a 46% e 0% para o genótipo m1/m1. Foi realizado o 2 que mostrou que o resultado deste trabalho é estatisticamente significativo (P<0,0001), sugerindo relação entre o polimorfismo CYP1A1m1 e o glaucoma primário de ângulo aberto.
Fialová, Lenka. "Izolace a identifikace kvasinek z vinice pro jejich možné využití k výrobě vína." Master's thesis, Vysoké učení technické v Brně. Fakulta chemická, 2016. http://www.nusl.cz/ntk/nusl-240584.
Full textArraes, Ana Carolina Palmeira. "Detecção da diversidade molecular de Candida spp. isoladas de UTI neonatal." reponame:Repositório Institucional da UFBA, 2013. http://www.repositorio.ufba.br/ri/handle/ri/11817.
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A incidência de candidemia tem aumentado nos últimos anos e o espectro das espécies de Candida tem mudado com a emergência das espécies não-albicans e com o aumento da resistência antifúngica. A técnica de PCR associada à análise dos polimorfismos de fragmentos de restrição (PCR-RFLP) e AP-PCR são exemplos de técnicas moleculares utilizadas para a detecção da variabilidade genética desses micro-organismos. O objetivo deste trabalho foi caracterizar molecularmente Candida spp. clinicamente importantes. Foram estudadas 82 leveduras do gênero Candida, 73 isolados clínicos e nove cepas padrão de referência da “American Type Culture Collection” (ATCC). O DNA genômico foi extraído através de lise mecânica/química e fenol-clorofórmio. Após amplificação com iniciadores ITS1 e ITS4, os produtos da PCR foram digeridos com as enzimas DdeI, HaeIII, BfaI e MspI. Outra amplificação foi realizada com o iniciador arbitrário AP-4. A identificação fenotípica revelou a frequência de 38% de C. parapsilosis, 33% de C. albicans, 27,5% de C. tropicalis e 1,5% de C. guilliermondii. Após amplificação, foi possível identificar e diferenciar as espécies C. lusitaniae, C. guilliermondii, C. famata e C. glabrata. A diferenciação entre C. albicans, C. dubliniensis C. tropicalis, C. krusei e C. parapsilosis não foi bem evidenciada com as enzimas DdeI e HaeIII. Porém, MspI conseguiu diferenciar C. tropicalis, C. krusei, C. parapsilosis, C. glabrata, C. guilliermondii, C. lusitaniae e C. famata, juntamente com BfaI que separou C. albicans de C. dubliniensis. Já a técnica de AP-PCR com o iniciador AP-4, possibilitou a distinção das nove espécies cepas padrão ATCC de Candida, pois todas apresentaram perfis de amplificação com número, intensidade e tamanho de banda específico, onde cada espécie foi alocada em grupo distinto e a relação de similaridade variou de 38-69%, ratificando o poder de diferenciação das espécies. As técnicas moleculares foram reprodutíveis e relativamente rápidas, de fácil interpretação e podem ser aplicadas na identificação de espécies clinicamente importantes de Candida para auxílio no diagnóstico mais rápido e tratamento mais eficiente.
Salvador
VINHAS, S. A. "ESTUDO SOBRE CARACTERÍSTICAS GENÉTICAS DE Mycobacterium tuberculosis ISOLADO DE PACIENTES COM E SEM LESÕES CAVITÁRIAS." Universidade Federal do Espírito Santo, 2013. http://repositorio.ufes.br/handle/10/4596.
Full textIntrodução: Baseado na hipótese de que a variabilidade genética de Mycobacterium tuberculosis (MTB) pode influenciar a virulência e a gravidade da doença os perfis genéticos de isolados clínicos de MTB foram avaliados para detectar associação entre diversidade genética e gravidade da doença. Objetivos: Analisar características genéticas de isolados de MTB e verificar sua possível associação com a gravidade da TB pulmonar. Métodos: Estudo retrospectivo, caso controle, conduzido em Vitória-ES, utilizando isolados de MTB (2003 a 2006, n=214) de pacientes com TB pulmonar, cavitária (127) e não cavitária (87). Realizou-se genotipagem por meio de RFLP-IS6110, Spoligotyping, MIRU-VNTR 24 loci, e a análise de deleções e inserções, como RDRio, RD174 utilizando PCR multiplex, bem como a detecção do Ag85C103. Realizou-se análise estatística, para verificação dos padrões de distribuição das variáveis, seguida de análises bivariadas para verificação de associações entre elas, empregando-se os teste exato de Fisher ou Chi-quadrado, ambos com 95% de intervalo de confiança e nível de significância () < 0,05. Resultados: Após a regressão logística, as variáveis que contribuíram no modelo explicativo da doença foram baciloscopia (ORajust = 5,96; IC= 2,58-13,73) e produção de escarro (ORajust = 4,55; IC= 1,28-16,12). Não houve associação estatisticamente significativa com o restante das variáveis.A família LAM foi a mais frequente entre os dois grupos analisados, representando 65 (62%) dos isolados no grupo cavitário e 40 isolados (38%) do grupo não cavitário. Não houve diferença estatisticamente significativa entre os grupos em relação à deleção RDRio (p=0,65) e com relação à deleção RD174 (p=0,65). Dentre os 205 isolados analisados, 25 (12%) isolados do grupo não cavitário e 43 (21%) do grupo cavitário, estavam em cluster. não houve diferença estatisticamente significativa entre a quantidade de clusters e os grupos analisados (p= 0,4). Conclusões: Foi determinado o perfil genotípico dos isolados de pacientes com doença pulmonar, cavitária e não cavitária. Não houve associação entre a presença de cavidade e os genótipos encontrados. Não houve associação do genótipo com nenhum dos marcadores moleculares avaliados. Palavras Chaves: Mycobacterium tuberculosis, genotipagem molecular, RFLP- IS6110, MIRU-VNTR 24 loci , Spoligotyping.
Michálek, Petr. "Sledování vlivu použité autochtonní kultury kvasinek na kvasný proces výroby vína." Master's thesis, Vysoké učení technické v Brně. Fakulta chemická, 2015. http://www.nusl.cz/ntk/nusl-217130.
Full text陳子明 and Tsz-ming Chan. "Comparison of molecular epidemiological study on Mycobacterium tuberculosis using IS6110 RFLP and IS6110 PCR typing." Thesis, The University of Hong Kong (Pokfulam, Hong Kong), 2000. http://hub.hku.hk/bib/B31969689.
Full textSchmidt, Maren [Verfasser]. "Die Aussagekraft zusätzlicher RFLP-Analysen in defizienten Abstammungsbegutachtungen mittels Short-Tandem-Repeat-Analyse / Maren Schmidt." Kiel : Universitätsbibliothek Kiel, 2012. http://d-nb.info/1020283599/34.
Full textFornazari, Anna Cristina Zari. "Determinação da comunidade microbiana pelo método molecular T-RFLP em carnes refrigeradas embaladas a vácuo." Universidade de São Paulo, 2011. http://www.teses.usp.br/teses/disponiveis/11/11141/tde-22112011-085341/.
Full textThe distension of the packaging of vacuum packed chilled meat, also know as blown pack, is assigned to psichrophilic and psychrotrophic bacteria, among which are part some clostridium, enterobacteria and lactic bacteria.The ability of these microorganisms to grow at refrigeration temperatures makes it an appropriate challenge its control by the industry. Brazil is a major producer of beef in the world and despite the importance of the beef industry represents for the country, there are few studies on the possible causes of deterioration of blown pack type. The importance of this work is based on the dearth of research on this problem that affects the meat industry. The aim of this study was to evaluate the presence of the main microorganisms involved in the deterioration blown pack type, with emphasis on clostridia, enterobacteria and lactic bacteria. Thus, the method-Terminal Restriction Fragment Length Polymorphism, available at Molecular biology laboratory of CENA-USP, was used to allow a rapid and accurate diagnosis for the detection of microorganisms. We analyzed 15 samples of beef chilled, vacuum packed wich abundant gas production, refrigerators from the states of São Paulo, Mato Grosso do Sul and Goiás cuts used for the analysis were striploin, shin, rump, hump, cop of rump and cube roll. The samples showing signs of deterioration such blown pack within the shelf life, with storage periods ranging from 30 to 120 days. Were identified Clostridium algidicarnis, Clostridium gasigenes, Clostridium putrefaciens, Clostridium frigidicarnis, Lactobacillus sakei, Hafnia alvei and Serratia liquefaciens by TRFLP technique, which proved an excellent tool for microbial identification in meat samples. The high prevalence of enterobacteria in samples of meat detected by the technique of TRFLP analysis was performed with conventional isolation and identification of enterobacteria, in order to confirm the presence of viable and culturable microorganisms in the samples. The species of enterobacteria were identified and cultivated H. alvei, Ser. liquefaciens, Citrobacter braakii, Pantoea sp. and Yersinia enterocolitica, the latter being potentially pathogenic and interest in public health. It was observed that H. alvei was the predominant species in the samples evaluated by both the T-RFLP technique and by conventional microbiological tests. In order to complement the results were analyzed conventional cultivation and isolation of Clostridium estertheticum and Clostridium gasigenes in meat samples. The PCR technique was employed for the purpose of identification of isolates.
Paes, Fernanda Araujo. "AnÃlise de comunidades microbianas de solo de manguezal por T-RFLP e microarranjos de DNA." Universidade Federal do CearÃ, 2008. http://www.teses.ufc.br/tde_busca/arquivo.php?codArquivo=2712.
Full textThe mangroves are essistemas important and productive, found along the coastline of tropical and subtropical regions. Important processes such as nutrient cycling, are directly connected to the activity of soil microbial communities. Given its strategic position the mangroves are very impacted the world. In Brazil, important areas such as the Bay of All Saints (BA) are severely affected by the presence of oil. Understanding the adaptation of the microbiota and its local dynamics, before the environmental change is essential to be able to maintain or restore these ecosystems. This thesis investigated the structure and function of microbial communities in a mangrove area of the Bay of All Saints polluted by the oil industry. Two sites were sampled - one located in the refinement of the industry and another, distant location and used as the control. Besides the measured abiotic data, two independent methods of cultivation were used: T-RFLP and DNA microarranjos. The results of both sites in the experiments of T-RFLP showed that the two bacterial communities differ in their structure. For the site sampled in the refinery, a greater number of Otus suggests an environmental stimulus, the bacterial community, a fact associÃvel the high organic matter content of the site. For microarranjos DNA, similar categories of genes were detected in both places, but the specificity of their sequences were distinct. The genes that encode for the remediation organic, were more representative, more than 40% in total in the two sites. Even detecting similar categories, only 4% of the gene sequences were common to the sites. These data show that different bodies are responsible for similar functions at each point. The difference between the sites observed in the experiments can be related with the fact that Site 1 is located in a region heavily affected by oil. Using the ecological data rates of T-RFLP indicated the site 1 as the most diverse, while the results with the DNA microarranjos show the opposite. In conclusion, the structure and function of the local microbiota are affected by the presence of the oil industry. Additional studies may help understand the dynamics of microbial communities, facing the future exposure to the oil and / or derivatives.
Os manguezais sÃo essistemas importantes e produtivos, encontrados ao longo da linha da costa de regiÃes tropicias e subtropicais. Processos importantes como a ciclagem de nutrientes, estÃo diretamente conectados à atividade das comunidades microbianas desses solos. Dada sua posiÃÃo estratÃgica os manguezais sÃo bastante impactados no mundo todo. No Brasil, Ãreas importantes como a da BaÃa de todos os Santos (BA) sÃo severamente afetadas pela presenÃa do petrÃleo. Compreender as adaptaÃÃes da microbiota local e sua dinÃmica, frente Ãs alteraÃÃes ambientais, à essencial para que se consiga manter ou restaurar esses ecossistemas. A presente dissertaÃÃo investigou a estrutura e a funÃÃo de comunidades microbianas em uma Ãrea de manguezal da baÃa de Todos os Santos poluÃda pela indÃstria do petrÃleo. Dois locais foram amostrados - um, situado na Ãrea de refinamento dessa indÃstria e o outro, distante desse local e usado como controle. AlÃm dos dados abiÃticos medidos, dois mÃtodos independentes de cultivo foram utilizados: T-RFLP e microarranjos de DNA. Os resultados de ambos os sÃtios nos experimentos de T-RFLP mostraram que as duas comunidades bacterianas diferem quanto à sua estrutura. Para o sÃtio amostrado na refinaria, um nÃmero maior de OTUs sugere um estÃmulo ambiental, na comunidade bacteriana, fato associÃvel ao alto teor de matÃria orgÃnica desse local. Para os microarranjos de DNA, categorias similares de genes foram detectados, em ambos os locais, mas a especificidade de suas sequÃncias foi distinta. Os genes que codificam para a remediaÃÃo orgÃnica, foram os mais representativos, mais de 40% no total nos dois sÃtios. Mesmo detectando categorias semelhantes, apenas 4% das sequÃncias genÃticas foram comuns aos sÃtios. Estes dados mostram que organismos diferentes sÃo responsÃveis por funÃÃes similares em cada ponto. A diferenÃa entre os locais observadas nos experimentos pode ser relacionada, com o fato do sÃtio 1 situar-se numa regiÃo fortemente afetada por hidrocarbonetos. Utilizando-se Ãndices ecolÃgicos os dados de T-RFLP indicaram o sÃtio 1 como o mais diverso, enquantoo os resultados com os microarranjos de DNA mostram o oposto. Concluindo, a estrutura e funÃÃo da microbiota local sÃo afetadas pela presenÃa da indÃstria do petrÃleo. Estudos adicionais poderÃo ajudar a compreender a dinÃmica dessas comunidades microbianas, frente Ãs futuras exposiÃÃes ao Ãleo e/ou derivados.
Baud, Sylvie. "Recherche de corrélations entre marqueurs moléculaires de type RFLP et caractères agronomiques chez Zea mays." Lyon 1, 1992. http://www.theses.fr/1992LYO10119.
Full textChan, Tsz-ming. "Comparison of molecular epidemiological study on Mycobacterium tuberculosis using IS6110 RFLP and IS6110 PCR typing." Hong Kong : University of Hong Kong, 2000. http://sunzi.lib.hku.hk/hkuto/record.jsp?B22029850.
Full textPaes, Fernanda Araújo. "Análise de comunidades microbianas de solo de manguezal por T-RFLP e microarranjos de DNA." reponame:Repositório Institucional da UFC, 2008. http://www.repositorio.ufc.br/handle/riufc/4926.
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Os manguezais são ecossistemas importantes e produtivos, encontrados ao longo da linha da costa de regiões tropicais e subtropicias. Processos importantes, como a ciclagem de nutrientes, estão diretamente conectados à atividade das comunidades microbianas desses solos. Dada sua posição estratégica, os manguezais são bastante impactados no mundo todo. No Brasil, áreas importantes como a da Baía de todos os Santos (BA) são severamente afetadas pela presença do petróleo. Compreender as adaptações da microbiota local e sua dinâmica, frente às alterações ambientais, é essencial para que se consiga manter ou restaurar esses ecossistemas. A presente dissertação investigou a estrutura e a função de comunidades microbianas em uma área do manguezal da baía de Todos os Santos, poluída pela indústria do petróleo. Dois locais foram amostrados – um, situado na área de refinamento dessa indústria e o outro, distante desse local e usado como controle. Além dos dados abióticos medidos, dois métodos independentes de cultivo foram utilizados: T-RFLP e microarranjos de DNA. Os resultados de ambos os sítios, nos experimentos de T-RFLP, mostraram que as duas comunidades bacterianas diferem quanto à sua estrutura. Para o sítio amostrado na área da refinaria, um número maior de OTUs sugere um estímulo ambiental, na comunidade bacteriana, fato associável ao alto teor de matéria orgânica desse local. Para os microarranjos de DNA, categorias similares de genes foram detectadas, em ambos os locais, mas a especificidade de suas sequências foi distinta. Os genes que codificam para a remediação orgânica foram os mais representativos, mais de 40% do total nos dois sítios. Mesmo detectando categorias semelhantes, apenas 4% das sequências genéticas foram comuns aos sítios. Estes dados mostram que organismos diferentes são responsáveis por funções similares em cada ponto. A diferença entre os locais, observada nos experimentos, pode ser relacionada com o fato do sítio 1 situar-se numa região fortemente afetada por hidrocarbonetos. Utilizando-se índices ecológicos, os dados de T-RFLP indicaram o sítio 1 como mais diverso, enquanto os resultados dos microarranjos de DNA mostraram o oposto. Concluindo, a estrutura e função da microbiota local são afetadas pela presença da indústria do petróleo. Estudos adicionais poderão ajudar a compreender a dinâmica dessas comunidades microbianas, frente às futuras exposições ao óleo e/ou derivados.
Marson, Erica Perez. "Caracterização da freqüência de heterozigose em genes ligados à precocidade sexual em novilhas de corte compostas." Universidade de São Paulo, 2005. http://www.teses.usp.br/teses/disponiveis/74/74131/tde-25072005-091446/.
Full textThe luteinizing hormone receptor (LHR) and follicle-stimulating receptor (FSHR) genes, known for their influence on the onset of puberty were evaluated by PCR-RFLP analysis in a population of 370 European-Zebu composite beef heifers from different breed contributions. The objectives were to genetically characterize the investigated population using genotype and allelic frequencies values besides on variability and gene diversity estimates; to evaluate the effect of markers on sexual precocity, characterized as the probability of pregnancy during the first breeding season (PP); and to estimate the proportion of total genetic variance in the PP related to the investigated markers, as well as the heritability estimate for PP by the Restricted Maximum Likelihood (REML) method for animal and sire models. The high number of heterozygous animals observed in almost all breed compositions studied for both loci, with average heterozigosity values of 57%, showed the high genetic variability on this hybrid population. Higher pregnancy rates were observed in heterozygous heifers (67% and 66% for LHR and FSHR genes, respectively), however, no effect of RFLP polymorphism for LHR (P=0.9188) and FSHR (P=0.8831) on pregnancy rate was observed. The heritabily estimates for PP were 0.21 and 0.41, using the animal and sire model, respectively. The small magnitude of the (co)variance components estimates related to random effects of LHR and FSHR, showed their small contribution in the proportion of total variance of pregnancy, indicating a polygenic inheritance for this trait. The results found in this work indicate that selection of beef heifers in animal genetic breeding programs for sexual precocity based on the inclusion of genotype information on RFLP for LHR e FSHR markers is not recommended. The investigation of other important genes related to puberty onset in heifers is necessary. However, the evaluated markers were informative and may be indicated for genetic characterization studies in other bovine populations. The high heterozigosity observed on the studied composite population maximizes the exploration of these animals in crossbreeding