Journal articles on the topic 'Repressilator'
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BULDÚ, JAVIER M., JORDI GARCÍA-OJALVO, ALEXANDRE WAGEMAKERS, and MIGUEL A. F. SANJUÁN. "ELECTRONIC DESIGN OF SYNTHETIC GENETIC NETWORKS." International Journal of Bifurcation and Chaos 17, no. 10 (October 2007): 3507–11. http://dx.doi.org/10.1142/s0218127407019275.
Full textOliveira, Samuel M. D., Jerome G. Chandraseelan, Antti Häkkinen, Nadia S. M. Goncalves, Olli Yli-Harja, Sofia Startceva, and Andre S. Ribeiro. "Single-cell kinetics of a repressilator when implemented in a single-copy plasmid." Molecular BioSystems 11, no. 7 (2015): 1939–45. http://dx.doi.org/10.1039/c5mb00012b.
Full textBUŞE, OLGUŢA, ALEXEY KUZNETSOV, and RODRIGO A. PÉREZ. "EXISTENCE OF LIMIT CYCLES IN THE REPRESSILATOR EQUATIONS." International Journal of Bifurcation and Chaos 19, no. 12 (December 2009): 4097–106. http://dx.doi.org/10.1142/s0218127409025237.
Full textUshikubo, T., W. Inoue, M. Yoda, and M. Sasai. "3P287 Stochastic Dynamics of Repressilator." Seibutsu Butsuri 44, supplement (2004): S261. http://dx.doi.org/10.2142/biophys.44.s261_3.
Full textDukarić, Maša, Hassan Errami, Roman Jerala, Tina Lebar, Valery G. Romanovski, János Tóth, and Andreas Weber. "On three genetic repressilator topologies." Reaction Kinetics, Mechanisms and Catalysis 126, no. 1 (December 18, 2018): 3–30. http://dx.doi.org/10.1007/s11144-018-1519-5.
Full textBorg, Yanika, Ekkehard Ullner, Afnan Alagha, Ahmed Alsaedi, Darren Nesbeth, and Alexey Zaikin. "Complex and unexpected dynamics in simple genetic regulatory networks." International Journal of Modern Physics B 28, no. 14 (April 25, 2014): 1430006. http://dx.doi.org/10.1142/s0217979214300060.
Full textMüller, Stefan, Josef Hofbauer, Lukas Endler, Christoph Flamm, Stefanie Widder, and Peter Schuster. "A generalized model of the repressilator." Journal of Mathematical Biology 53, no. 6 (September 2, 2006): 905–37. http://dx.doi.org/10.1007/s00285-006-0035-9.
Full textKuznetsov, A., and V. Afraimovich. "Heteroclinic cycles in the repressilator model." Chaos, Solitons & Fractals 45, no. 5 (May 2012): 660–65. http://dx.doi.org/10.1016/j.chaos.2012.02.009.
Full textKnotz, Gabriel, Ulrich Parlitz, and Stefan Klumpp. "Synchronization of a genetic oscillator with the cell division cycle." New Journal of Physics 24, no. 3 (March 1, 2022): 033050. http://dx.doi.org/10.1088/1367-2630/ac5c16.
Full textGlyzin, S., A. Kolesov, and N. Rozov. "On a mathematical model of a repressilator." St. Petersburg Mathematical Journal 33, no. 5 (August 24, 2022): 797–828. http://dx.doi.org/10.1090/spmj/1727.
Full textVerdugo, Anael. "Hopf Bifurcation Analysis of the Repressilator Model." American Journal of Computational Mathematics 08, no. 02 (2018): 137–52. http://dx.doi.org/10.4236/ajcm.2018.82011.
Full textBuzzi, Claudio A., and Jaume Llibre. "Hopf bifurcation in the full repressilator equations." Mathematical Methods in the Applied Sciences 38, no. 7 (April 23, 2014): 1428–36. http://dx.doi.org/10.1002/mma.3158.
Full textPotapov, Ilya, Boris Zhurov, and Evgeny Volkov. "Multi-stable dynamics of the non-adiabatic repressilator." Journal of The Royal Society Interface 12, no. 104 (March 2015): 20141315. http://dx.doi.org/10.1098/rsif.2014.1315.
Full textVolkov, E. I., and B. A. Zhurov. "Dynamic Behavior of an Isolated Repressilator with Feedback." Radiophysics and Quantum Electronics 56, no. 10 (March 2014): 697–707. http://dx.doi.org/10.1007/s11141-014-9474-0.
Full textPett, J. Patrick, Matthew Kondoff, Grigory Bordyugov, Achim Kramer, and Hanspeter Herzel. "Co-existing feedback loops generate tissue-specific circadian rhythms." Life Science Alliance 1, no. 3 (June 2018): e201800078. http://dx.doi.org/10.26508/lsa.201800078.
Full textBratsun, D. А., E. S. Lorgov, and A. O. Poluyanov. "On the repressilator stability with time-delayed gene expression." ВЕСТНИК ПЕРМСКОГО УНИВЕРСИТЕТА. ФИЗИКА, no. 2 (2018): 75–87. http://dx.doi.org/10.17072/1994-3598-2018-2-75-87.
Full textPett, J. Patrick, Anja Korenčič, Felix Wesener, Achim Kramer, and Hanspeter Herzel. "Feedback Loops of the Mammalian Circadian Clock Constitute Repressilator." PLOS Computational Biology 12, no. 12 (December 12, 2016): e1005266. http://dx.doi.org/10.1371/journal.pcbi.1005266.
Full textHellen, Edward H., Syamal K. Dana, Boris Zhurov, and Evgeny Volkov. "Electronic Implementation of a Repressilator with Quorum Sensing Feedback." PLoS ONE 8, no. 5 (May 2, 2013): e62997. http://dx.doi.org/10.1371/journal.pone.0062997.
Full textBratsun, Dmitry Anatolievich, and Maksim Dmitrievich Buzmakov. "Repressilator with time-delayed gene expression. Part II. Stochastic description." Computer Research and Modeling 13, no. 3 (June 2021): 587–609. http://dx.doi.org/10.20537/2076-7633-2021-13-3-587-609.
Full textBratsun, Dmitry Anatolievich, Eugeny Sergeevich Lorgov, and Alexander Olegovich Poluyanov. "Repressilator with time-delayed gene expression. Part I. Deterministic description." Computer Research and Modeling 10, no. 2 (April 2018): 241–59. http://dx.doi.org/10.20537/2076-7633-2018-10-2-241-259.
Full textShum, Henry, Victor V. Yashin, and Anna C. Balazs. "Self-assembly of microcapsules regulated via the repressilator signaling network." Soft Matter 11, no. 18 (2015): 3542–49. http://dx.doi.org/10.1039/c5sm00201j.
Full textDeo, Ishan, and Krishnacharya Khare. "A simple electronic circuit demonstrating Hopf bifurcation for an advanced undergraduate laboratory." American Journal of Physics 90, no. 12 (December 2022): 908–13. http://dx.doi.org/10.1119/5.0062969.
Full textHara, Shinji, Tetsuya Iwasaki, and Yutaka Hori. "Instability margin analysis for parametrized LTI systems with application to repressilator." Automatica 136 (February 2022): 110047. http://dx.doi.org/10.1016/j.automatica.2021.110047.
Full textStrelkowa, Natalja, and Mauricio Barahona. "Transient dynamics around unstable periodic orbits in the generalized repressilator model." Chaos: An Interdisciplinary Journal of Nonlinear Science 21, no. 2 (April 13, 2011): 023104. http://dx.doi.org/10.1063/1.3574387.
Full textKim, Keun-Young, David Lepzelter, and Jin Wang. "Single molecule dynamics and statistical fluctuations of gene regulatory networks: A repressilator." Journal of Chemical Physics 126, no. 3 (January 21, 2007): 034702. http://dx.doi.org/10.1063/1.2424933.
Full textAgrawal, Vidit, Shivpal Singh Kang, and Sudeshna Sinha. "Realization of morphing logic gates in a repressilator with quorum sensing feedback." Physics Letters A 378, no. 16-17 (March 2014): 1099–103. http://dx.doi.org/10.1016/j.physleta.2014.02.015.
Full textChandraseelan, Jerome G., Samuel M. D. Oliveira, Antti Häkkinen, Huy Tran, Ilya Potapov, Adrien Sala, Meenakshisundaram Kandhavelu, and Andre S. Ribeiro. "Effects of temperature on the dynamics of the LacI-TetR-CI repressilator." Molecular BioSystems 9, no. 12 (2013): 3117. http://dx.doi.org/10.1039/c3mb70203k.
Full textGlyzin, S. D., A. Yu Kolesov, and N. Kh Rozov. "Existence and stability of the relaxation cycle in a mathematical repressilator model." Mathematical Notes 101, no. 1-2 (January 2017): 71–86. http://dx.doi.org/10.1134/s0001434617010072.
Full textPokhilko, Alexandra, Aurora Piñas Fernández, Kieron D. Edwards, Megan M. Southern, Karen J. Halliday, and Andrew J. Millar. "The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops." Molecular Systems Biology 8, no. 1 (January 2012): 574. http://dx.doi.org/10.1038/msb.2012.6.
Full textDilão, Rui. "The regulation of gene expression in eukaryotes: Bistability and oscillations in repressilator models." Journal of Theoretical Biology 340 (January 2014): 199–208. http://dx.doi.org/10.1016/j.jtbi.2013.09.010.
Full textTOKUDA, ISAO T., ALEXANDRE WAGEMAKERS, and MIGUEL A. F. SANJUÁN. "PREDICTING THE SYNCHRONIZATION OF A NETWORK OF ELECTRONIC REPRESSILATORS." International Journal of Bifurcation and Chaos 20, no. 06 (June 2010): 1751–60. http://dx.doi.org/10.1142/s0218127410026800.
Full textAyupova, N. B., V. P. Golubyatnikov, and M. V. Kazantsev. "On the existence of a cycle in an asymmetric model of a molecular repressilator." Numerical Analysis and Applications 10, no. 2 (April 2017): 101–7. http://dx.doi.org/10.1134/s199542391702001x.
Full textRim, D. N., P. Cremades, and Pablo Federico Kaluza. "A simple electronic device to experiment with the Hopf bifurcation." Revista Mexicana de Física E 65, no. 1 (January 21, 2019): 58. http://dx.doi.org/10.31349/revmexfise.65.58.
Full textAyupova, N. B., and V. P. Golubyatnikov. "On the uniqueness of a cycle in an asymmetric three-dimensional model of a molecular repressilator." Journal of Applied and Industrial Mathematics 8, no. 2 (April 2014): 153–57. http://dx.doi.org/10.1134/s199047891402001x.
Full textPerez-Carrasco, Ruben, Chris P. Barnes, Yolanda Schaerli, Mark Isalan, James Briscoe, and Karen M. Page. "Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors." Cell Systems 6, no. 4 (April 2018): 521–30. http://dx.doi.org/10.1016/j.cels.2018.02.008.
Full textGlyzin, Sergey D., Andgey Yu Kolesov, and Nikolay Kh Rozov. "New Approach to Gene Network Modeling." Modeling and Analysis of Information Systems 26, no. 3 (September 28, 2019): 365–404. http://dx.doi.org/10.18255/1818-1015-2019-3-365-404.
Full textSkornyakov, Vladimir, Maria Skornyakova, Antonina Shurygina, and Pavel Skornyakov. "Finite-state discrete-time Markov chain models of gene regulatory networks." F1000Research 3 (September 12, 2014): 220. http://dx.doi.org/10.12688/f1000research.4669.1.
Full textShum, Henry, and Anna C. Balazs. "Synthetic quorum sensing in model microcapsule colonies." Proceedings of the National Academy of Sciences 114, no. 32 (July 24, 2017): 8475–80. http://dx.doi.org/10.1073/pnas.1702288114.
Full textYAMASHINO, Takafumi. "From a Repressilator-Based Circadian Clock Mechanism to an External Coincidence Model Responsible for Photoperiod and Temperature Control of Plant Architecture inArabodopsis thaliana." Bioscience, Biotechnology, and Biochemistry 77, no. 1 (January 23, 2013): 10–16. http://dx.doi.org/10.1271/bbb.120765.
Full textNarayanan, G., M. Syed Ali, Rajagopal Karthikeyan, Grienggrai Rajchakit, and Anuwat Jirawattanapanit. "Impulsive control strategies of mRNA and protein dynamics on fractional-order genetic regulatory networks with actuator saturation and its oscillations in repressilator model." Biomedical Signal Processing and Control 82 (April 2023): 104576. http://dx.doi.org/10.1016/j.bspc.2023.104576.
Full textKosey, Dipali, and Shailza Singh. "Computational design of molecular motors as nanocircuits in Leishmaniasis." F1000Research 6 (January 31, 2017): 94. http://dx.doi.org/10.12688/f1000research.10701.1.
Full textKosey, Dipali, and Shailza Singh. "Computational design of molecular motors as nanocircuits in Leishmaniasis." F1000Research 6 (August 3, 2017): 94. http://dx.doi.org/10.12688/f1000research.10701.2.
Full textYoda, M., and M. Sasai. "2P308 Stochastics dynamics of coupled repressilators." Seibutsu Butsuri 45, supplement (2005): S196. http://dx.doi.org/10.2142/biophys.45.s196_4.
Full textPotapov, Iliya Sergeevich, and Evgeny Izrailevich Volkov. "Dynamics analysis of coupled synthetic genetic repressilators." Computer Research and Modeling 2, no. 4 (December 2010): 403–18. http://dx.doi.org/10.20537/2076-7633-2010-2-4-403-418.
Full textStankevich, N., and E. Volkov. "Evolution of quasiperiodicity in quorum-sensing coupled identical repressilators." Chaos: An Interdisciplinary Journal of Nonlinear Science 30, no. 4 (April 2020): 043122. http://dx.doi.org/10.1063/1.5140696.
Full textGarcia-Ojalvo, J., M. B. Elowitz, and S. H. Strogatz. "Modeling a synthetic multicellular clock: Repressilators coupled by quorum sensing." Proceedings of the National Academy of Sciences 101, no. 30 (July 15, 2004): 10955–60. http://dx.doi.org/10.1073/pnas.0307095101.
Full textAbrego, Luis, and Alexey Zaikin. "Integrated Information as a Measure of Cognitive Processes in Coupled Genetic Repressilators." Entropy 21, no. 4 (April 10, 2019): 382. http://dx.doi.org/10.3390/e21040382.
Full textNAKAMURA, Tomohiko, Yutaka HORI, and Shinji HARA. "Hierarchical Modeling and Local Stability Analysis for Repressilators Coupled by Quorum Sensing." SICE Journal of Control, Measurement, and System Integration 7, no. 3 (2014): 133–40. http://dx.doi.org/10.9746/jcmsi.7.133.
Full textLing, Guang, Zhi-Hong Guan, Ding-Xin He, Rui-Quan Liao, and Xian-He Zhang. "Stability and bifurcation analysis of new coupled repressilators in genetic regulatory networks with delays." Neural Networks 60 (December 2014): 222–31. http://dx.doi.org/10.1016/j.neunet.2014.08.012.
Full textInagaki, Shiho, and Nathanael Aubert-Kato. "Controlling the Synchronization of Molecular Oscillators through Indirect Coupling." Micromachines 13, no. 2 (February 1, 2022): 245. http://dx.doi.org/10.3390/mi13020245.
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