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Journal articles on the topic 'Recombinant inbred lines'

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Published: 4 June 2021

Last updated: 19 February 2022

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1

Burr, B., F. A. Burr, K. H. Thompson, M. C. Albertson, and C. W. Stuber. "Gene mapping with recombinant inbreds in maize." Genetics 118, no. 3 (March 1, 1988): 519–26. http://dx.doi.org/10.1093/genetics/118.3.519.

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Abstract Recombinant inbred lines of maize have been developed for the rapid mapping of molecular probes to chromosomal location. Two recombinant inbred families have been constructed from F2 populations of T232 X CM37 and CO159 X Tx303. A genetic map based largely on isozymes and restriction fragment length polymorphisms has been produced that covers virtually the entire maize genome. In order to map a new gene, an investigator has only to determine its allelic distribution among the recombinant inbred lines and then compare it by computer with the distributions of all previously mapped loci. The availability of the recombinant inbreds and the associated data base constitute an efficient means of mapping new molecular markers in maize.

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2

Broman, Karl W. "The Genomes of Recombinant Inbred Lines." Genetics 169, no. 2 (November 15, 2004): 1133–46. http://dx.doi.org/10.1534/genetics.104.035212.

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3

Broman, K. W. "The Genomes of Recombinant Inbred Lines." Genetics 173, no. 4 (August 1, 2006): 2419. http://dx.doi.org/10.1093/genetics/173.4.2419.

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4

Crow, James F. "Haldane, Bailey, Taylor and Recombinant-Inbred Lines." Genetics 176, no. 2 (June 1, 2007): 729–32. http://dx.doi.org/10.1093/genetics/176.2.729.

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5

Falque, M. "IRILmap: linkage map distance correction for intermated recombinant inbred lines/advanced recombinant inbred strains." Bioinformatics 21, no. 16 (June 16, 2005): 3441–42. http://dx.doi.org/10.1093/bioinformatics/bti543.

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6

Kumari, Pummy, Uma Ahuja, Sunita Jain, and R. K. Jain. "Fragrance Analysis among Recombinant Inbred Lines of Rice." Asian Journal of Plant Sciences 11, no. 4 (June 15, 2012): 190–94. http://dx.doi.org/10.3923/ajps.2012.190.194.

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7

Teuscher, Friedrich, and Karl W. Broman. "Haplotype Probabilities for Multiple-Strain Recombinant Inbred Lines." Genetics 175, no. 3 (December 6, 2006): 1267–74. http://dx.doi.org/10.1534/genetics.106.064063.

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8

Rockman, Matthew V., and Leonid Kruglyak. "Breeding Designs for Recombinant Inbred Advanced Intercross Lines." Genetics 179, no. 2 (May 27, 2008): 1069–78. http://dx.doi.org/10.1534/genetics.107.083873.

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9

Tahir, M., and F. J. Muehlbauer. "Gene Mapping in Lentil With Recombinant Inbred Lines." Journal of Heredity 85, no. 4 (July 1994): 306–10. http://dx.doi.org/10.1093/oxfordjournals.jhered.a111464.

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10

Paran, I., I. Goldman, S. D. Tanksley, and D. Zamir. "Recombinant inbred lines for genetic mapping in tomato." Theoretical and Applied Genetics 90, no. 3-4 (March 1995): 542–48. http://dx.doi.org/10.1007/bf00222001.

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11

Abdi, Nishtman, Reza Darvishzadeh, and Hatami Maleki. "Effective selection criteria for screening drought tolerant recombinant inbred lines of sunflower." Genetika 45, no. 1 (2013): 153–66. http://dx.doi.org/10.2298/gensr1301153a.

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In this study, seventy two sunflower recombinant inbred lines were tested for their yielding ability under both water-stressed and well-watered states. The inbred lines were evaluated in a rectangular 8?9 lattice design with two replications in both well-watered and water-stressed conditions, separately. Eight drought tolerance indices including stability tolerance index (STI), mean productivity (MP), geometric mean productivity (GMP), harmonic mean (HM), stress susceptibility index (SSI), tolerance index (TOL), yield index (YI) and yield stability index (YSI) were calculated based on grain yield for every genotype. Results showed the highest values of mean productivity (MP) index, geometric mean productivity (GMP), yield index (YI), harmonic mean (HM) and stress tolerance index (STI) indices for ?C134a? inbred line and least values of stress susceptibility index (SSI) and tolerance (TOL) for C61 inbred line. According to correlation of indices with yield performance under both drought stress and non-stress states and principle component analysis, indices including HM, MP, GMP and STI could properly distinguish drought tolerant sunflower inbred lines with high yield performance under both states. Cluster analysis of inbred lines using Ys, Yp and eight indices, categorized them into four groups including 19, 6, 26 and 19 inbred lines.

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12

Guo, Tingting, Huihui Li, Jianbing Yan, Jihua Tang, Jiansheng Li, Zhiwu Zhang, Luyan Zhang, and Jiankang Wang. "Performance prediction of F1 hybrids between recombinant inbred lines derived from two elite maize inbred lines." Theoretical and Applied Genetics 126, no. 1 (September 13, 2012): 189–201. http://dx.doi.org/10.1007/s00122-012-1973-9.

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13

IPSILANDIS, C. G., and M. KOUTSIKA-SOTIRIOU. "The combining ability of recombinant S-lines developed from an F2 maize population." Journal of Agricultural Science 134, no. 2 (March 2000): 191–98. http://dx.doi.org/10.1017/s0021859699007406.

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Starting with the F2 generation of the single-cross commercial hybrid Lorena (PR3183), recombinant lines were developed combining half-sib/S1 evaluation on widely spaced plants in the direction of high yielding per se. Combining ability tests consisted of crosses between: (a) recombinant lines of common pedigree and (b) recombinant lines and freely available inbred lines. The highest-yielding crosses between recombinant lines reached 100% of the original F1 hybrid in a percentage of 14·2. Low heterosis was estimated owing to additive gene action of recombinant lines. Crosses between recombinant lines and freely available inbred lines outyielded significantly the commercial F1 hybrid in a percentage of 33·3. Heterosis was greater and the original F1 hybrid was outyielded significantly because of non-additive gene action. When the applied breeding procedure on a source population with high yield adaptability is adopted and where effects of intergenotypic competition masking the inherent genotypic value are controlled, population improvement may be substituted by combined half-sib/S1 selection for productivity of lines per se in low stress conditions during the very early stages.

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14

Tidmarsh, G. F., M. O. Dailey, and I. L. Weissman. "Expression of a monoclonal antibody-defined, B-lineage transformation antigen specifically identifies Abelson-diseased animals. Genetically determined resistance to Abelson murine leukemia virus acts before induction of gp160(6C3)." Journal of Experimental Medicine 164, no. 4 (October 1, 1986): 1356–61. http://dx.doi.org/10.1084/jem.164.4.1356.

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Mice genetically susceptible or genetically resistant to the leukemogenic effects of A-MuLV(Mo) were tested for their expression of the B-lineage neoplastic transformation-associated antigen, 6C3Ag. Genetically resistant inbred strains and recombinant inbred lines developed neither cells expressing high levels of 6C3Ag (6C3Aghi) in their hematolymphoid tissues nor Abelson leukemias. Genetically susceptible inbred strains and recombinant inbred lines developed high percentages of 6C3Aghi hematolymphoid cells concomitant with development of Abelson leukemias and lymphomas. Thus the genetically-determined resistance to A-MuLV(Mo) leukemogenesis appears to act at some step(s) after virus infection but before the stage of malignant progression, which is marked by 6C3Ag expression.

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15

Martin, Olivier C., and Frédéric Hospital. "Distribution of Parental Genome Blocks in Recombinant Inbred Lines." Genetics 189, no. 2 (August 11, 2011): 645–54. http://dx.doi.org/10.1534/genetics.111.129700.

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16

Cortes, Diego Fernando Marmolejo, Renato Santa-Catarina, Alinne Oliveira Nunes Azevedo, Tathianne Pastana de Sousa Poltronieri, Julio Cesar Fiorio Vettorazzi, Nádia Fernandes Moreira, Geraldo Antônio Ferreguetti, Helaine Christine Cancela Ramos, Alexandre Pio Viana, and Messias Gonzaga Pereira. "Papaya recombinant inbred lines selection by image-based phenotyping." Scientia Agricola 75, no. 3 (May 2018): 208–15. http://dx.doi.org/10.1590/1678-992x-2016-0482.

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17

Tsunematsu, Hiroshi, Atsushi Yoshimura, Yoshiaki Harushima, Yoshiaki Nagamura, Nori Kurata, Masahiro Yano, Takuji Sasaki, and Nobuo Iwata. "RFLP Framework Map Using Recombinant Inbred Lines in Rice." Ikushugaku zasshi 46, no. 3 (1996): 279–84. http://dx.doi.org/10.1270/jsbbs1951.46.279.

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18

Staub, Jack E., James D. McCreight, and Juan E. Zalapa. "USDA 846-1 Fractal Melon and Derived Recombinant Inbred Lines." HortScience 46, no. 10 (October 2011): 1423–25. http://dx.doi.org/10.21273/hortsci.46.10.1423.

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19

Chandel, Uttam, BS Mankotia, and KS Thakur. "Assesment of recombinant lines of maize hybrids for inbred development." Bangladesh Journal of Botany 43, no. 3 (January 15, 2015): 363–66. http://dx.doi.org/10.3329/bjb.v43i3.21615.

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Maize (Zea mays L.) breeders currently exploit genetically narrow-base populations by deriving the recombination lines from F2 of commercial single cross hybrids. A mating design was proposed for maize hybrid evaluation as source germplasm. The commercial single cross hybrids, Hi Shell, DKC 7074 and PMZ 4, developed by the commercial company, Monsanto, were evaluated for their usefulness as germplasm. According to mating design three criteria were used: the percentage of inbreeding depression, the general combining ability and the specific combining ability. PMZ 4 had a lower percentage (21.9) of inbreeding depression, which was also combined with positive general combining ability (7.5) and negative specific combining ability. The estimated percentage of inbreeding depression was greater in DKC 7074 (31.4) and in Hi Shell (25.3). DKC 7074 also had negative general combining ability (35.5), while Hi Shell had positive specific combining ability (75.0). Therefore, evaluation through mating design showed PMZ 4 possesses more desirable genes and that its F2 may be a more profitable germplasm for developing elite inbred lines DOI: http://dx.doi.org/10.3329/bjb.v43i3.21615 Bangladesh J. Bot. 43(3): 363-366, 2014 (December)

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20

Carson, M. L., C. W. Stuber, and M. L. Senior. "Quantitative Trait Loci Conditioning Resistance to Phaeosphaeria Leaf Spot of Maize Caused by Phaeosphaeria maydis." Plant Disease 89, no. 6 (June 2005): 571–74. http://dx.doi.org/10.1094/pd-89-0571.

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Phaeosphaeria leaf spot (PLS) is a potentially important disease of maize (Zea mays) that has appeared in winter breeding nurseries in southern Florida. Inbred lines related to B73 are particularly susceptible to Phaeosphaeria leaf spot, whereas inbreds related to Mo17 are highly resistant. A previous study of the inheritance of resistance to Phaeosphaeria leaf spot in the cross B73 × Mo17 found that resistance is highly heritable and controlled by mostly additive gene action at three or four loci. In this study, we used 158 recombinant inbred (RI) lines derived from the cross B73 × Mo17 to map quantitative trait loci (QTL) governing resistance. The RI lines along with the parent inbred lines and the F1 were evaluated for PLS resistance in replicated trials over two winter growing seasons in southern Florida. Using the composite interval mapping (CIM) function of PLABQTL software, five QTL on four different chromosomes were found to control PLS resistance in Mo17. In addition, the × additive interaction between two of these QTL was found to be significant. Our results are in close agreement with the previous study, where generation mean analysis was used to study the inheritance of resistance to PLS.

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21

Khanal, R., A. Navabi, and L. Lukens. "Linkage map construction and quantitative trait loci (QTL) mapping using intermated vs. selfed recombinant inbred maize line (Zea mays L.)." Canadian Journal of Plant Science 95, no. 6 (November 2015): 1133–44. http://dx.doi.org/10.4141/cjps-2015-091.

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Khanal, R., Navabi, A. and Lukens, L. 2015. Linkage map construction and quantitative trait loci (QTL) mapping using intermated vs. selfed recombinant inbred maize line (Zea mays L.). Can. J. Plant Sci. 95: 1133–1144. Intermating of individuals in an F2 population increases genetic recombination between markers, which is useful for linkage map construction and quantitative trait loci (QTL) mapping. The objectives of this study were to compare the linkage maps and precision of QTL detection in an intermated recombinant inbred line (IRIL) population and a selfed recombinant inbred line (RIL) population. Both, IRIL and RIL, populations were developed from Zea mays inbred lines CG60 and CG102. The populations were grown in two environments to evaluate traits, and inbred lines from each population were genotyped with SSR and SNP markers for linkage map construction and QTL identification. In addition, we simulated RIL and IRIL populations from two inbred parents to compare the precision of QTL detection between simulated RIL and IRIL populations. In the empirical study, the linkage map was longer in RIL as compared with IRIL, and the average QTL support interval was reduced by 1.37-fold in the IRIL population compared with the RIL population. We detected 16 QTL for flowering time, plant height, leaf number, and stay green in at least one recombinant inbred line population. Two out of 16 QTL were shared between two recombinant inbred line populations. In the simulation study, the QTL support interval was reduced by 1.66-fold in the IRIL population as compared with the RIL population and linked QTL were identified more frequently in IRIL population as compared with RIL population. This study supports the utility of intermated RIL populations for precise QTL mapping.

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22

Kozub, N. A., I. A. Sozinov, A. Ya Bidnyk, N. A. Demianova, Ya B. Blume, and A. A. Sozinov. "Development of common wheat lines with the recombinant arm 1RS as a source of new combinations of disease and pest resistance genes." Interdepartmental Thematic Scientific Collection of Plant Protection and Quarantine, no. 62 (September 3, 2016): 143–50. http://dx.doi.org/10.36495/1606-9773.2016.62.143-150.

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A combination of recombinant-inbred lines of the F6 generation from the cross B-16 ќ AR 7086 between lines with two wheat-rye translocations, 1BL/1RS from the Petkus and 1AL/1RS from the rye Insave, was developed. Using gliadin and secalin loci as genetic markers we identified recombinant arm 1RS in positions 1A and 1B in about 10% of lines. The rest of lines with the rye material may also carry recombinant 1RS, which can be identified with DNA markers. Lines with recombinant arm 1RS may serve as a source of new combination of rye genes for disease and pest resistance.

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23

Li, Shui Qin, Hua Ping Tang, Han Zhang, Yang Mu, Xiu Jin Lan, and Jian Ma. "A 1BL/1RS translocation contributing to kernel length increase in three wheat recombinant inbred line populations." Czech Journal of Genetics and Plant Breeding 56, No. 2 (March 17, 2020): 43–51. http://dx.doi.org/10.17221/79/2019-cjgpb.

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The 1BL/1RS wheat-rye translocation has been widely utilized in wheat genetic improvement and breeding programs. Our understanding on the effects of the 1BL/1RS translocation on wheat kernel size (e.g. length and width) is limited despite of numerous studies reporting about the effects on kernel weight. Here, we identified a wheat 1BL/1RS translocation line 88-1643 with higher kernel length (KL) using fluorescence in situ hybridization (FISH), genomic in situ hybridization (GISH) and molecular markers. To detect the possible role of the 1BL/1RS translocation in KL, kernel width (KW), and thousand-kernel weight (TKW), three recombinant inbred line (RIL) populations were constructed by crossing 88-1643 and three other wheat lines. As expected, the results showed that the values of KL in lines carrying 1RS were significantly higher than those carrying 1BS in three RIL populations at multiple environments, indicating that a major and stably expressed allele or gene responsible for increasing KL is most likely located on 1RS from 88-1643. Additionally, in one RIL population, the increased KL contributed significantly to the increase in TKW. Collectively, the 1BL/1RS translocation reported here is of interest to reveal molecular mechanism of the gene controlling KL and will be useful for improving wheat yield.

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24

Zhang, Renbing, Yong Xu, Ke Yi, Haiying Zhang, Ligong Liu, Guoyi Gong, and Amnon Levi. "A Genetic Linkage Map for Watermelon Derived from Recombinant Inbred Lines." Journal of the American Society for Horticultural Science 129, no. 2 (March 2004): 237–43. http://dx.doi.org/10.21273/jashs.129.2.0237.

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A genetic linkage map was constructed for watermelon using 117 recombinant inbred lines (RILs) (F2S7) descended from a cross between the high quality inbred line 97103 [Citrullus lanatus var. lanatus (Thunb.) Matsum. & Nakai] and the Fusarium wilt (races 0, 1, and 2) resistant U.S. Plant Introduction (PI) 296341 (C. lanatus var. citroides). The linkage map contains 87 randomly amplified polymorphic DNA (RAPD) markers, 13 inter simple sequence repeat (ISSR) markers, and four sequenced characterized amplified region (SCAR) markers. The map consists of 15 linkage groups. Among them are a large linkage group of 31 markers covering a mapping distance of 277.5 cM, six groups each with 4 to 12 markers covering a mapping distance of 51.7 to 172.2 cM, and eight small groups each with 2-5 markers covering a mapping distance of 7.9 to 46.4 cM. The map covers a total distance of 1027.5 cM with an average distance of 11.7 cM between two markers. The map is useful for the further development of quantitative trait loci (QTLs) affecting fruit qualities and for identification of genes conferring resistance to Fusarium wilt (races 0, 1 and 2). The present map can be used for further construction of a reference linkage map for watermelon based on an immortalized mapping population with progenies homozygous for most gene loci.

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25

Kong, Wenqian, Huizhe Jin, Cleve D. Franks, Changsoo Kim, Rajib Bandopadhyay, Mukesh K. Rana, Susan A. Auckland, et al. "Genetic Analysis of Recombinant Inbred Lines for Sorghum bicolor × Sorghum propinquum." G3 Genes|Genomes|Genetics 3, no. 1 (January 1, 2013): 101–8. http://dx.doi.org/10.1534/g3.112.004499.

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Abstract We describe a recombinant inbred line (RIL) population of 161 F5 genotypes for the widest euploid cross that can be made to cultivated sorghum (Sorghum bicolor) using conventional techniques, S. bicolor × Sorghum propinquum, that segregates for many traits related to plant architecture, growth and development, reproduction, and life history. The genetic map of the S. bicolor × S. propinquum RILs contains 141 loci on 10 linkage groups collectively spanning 773.1 cM. Although the genetic map has DNA marker density well-suited to quantitative trait loci mapping and samples most of the genome, our previous observations that sorghum pericentromeric heterochromatin is recalcitrant to recombination is highlighted by the finding that the vast majority of recombination in sorghum is concentrated in small regions of euchromatin that are distal to most chromosomes. The advancement of the RIL population in an environment to which the S. bicolor parent was well adapted (indeed bred for) but the S. propinquum parent was not largely eliminated an allele for short-day flowering that confounded many other traits, for example, permitting us to map new quantitative trait loci for flowering that previously eluded detection. Additional recombination that has accrued in the development of this RIL population also may have improved resolution of apices of heterozygote excess, accounting for their greater abundance in the F5 than the F2 generation. The S. bicolor × S. propinquum RIL population offers advantages over early-generation populations that will shed new light on genetic, environmental, and physiological/biochemical factors that regulate plant growth and development.

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26

Lee, Ji-Yoon, Ju-Won Kang, Jun-Hyeon Cho, Jong-Hee Lee, Un-Sang Yeo, You-Chun Song, Dong-Soo Park, and Jong-Min Ko. "QTL Analysis of Yield Traits Using Hanareum2/Unkwang Recombinant Inbred Lines." Korean Journal of Breeding Science 51, no. 4 (December 1, 2019): 404–14. http://dx.doi.org/10.9787/kjbs.2019.51.4.404.

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27

Peng, Ze, Lubin Tan, Yolanda López, James Maku, Fengxia Liu, Hai Zhou, Yu‐Chien Tseng, et al. "Morphological and Genetic Characterization of Non‐Nodulating Peanut Recombinant Inbred Lines." Crop Science 58, no. 2 (March 2018): 540–50. http://dx.doi.org/10.2135/cropsci2017.06.0235.

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28

Dole, Jefferey, and David F. Weber. "Detection of Quantitative Trait Loci Influencing Recombination Using Recombinant Inbred Lines." Genetics 177, no. 4 (October 18, 2007): 2309–19. http://dx.doi.org/10.1534/genetics.107.076679.

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29

Graichen, Felipe André Sganzerla, José Antônio Martinelli, Luiz Carlos Federizzi, Marcelo Teixeira Pacheco, Márcia Soares Chaves, and Caroline de Lima Wesp. "Inheritance of resistance to oat crown rust in recombinant inbred lines." Scientia Agricola 67, no. 4 (August 2010): 435–40. http://dx.doi.org/10.1590/s0103-90162010000400010.

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Crown rust is the main disease affecting oats (Avena sativa L.), and genetic resistance has been the chief method utilized to control this disease. A population composed of 135 recombinant inbred lines, F5:6, generated by crossing the oat cultivar UFRGS 8 with the genotype Pc68/5*Starter, was assessed on the inheritance of resistance to crown rust (Puccinia coronata f. sp. avenae P. Syd. & Syd.). The evaluation of resistance in F5:6 seedlings was based on the type of infection resulting from inoculation with the race SQPT of P. coronata f. sp. avenae. The proportion of Resistant: Susceptible seedlings (R:S) was 62:64, which indicates that inheritance was governed by a single gene. The assessment of resistance inheritance in adult plants was performed in the field during the years 2004 and 2005. The distinction between resistant and susceptible classes was based on the final severity (FS) as well as the area under the disease progress curve, which was normalized and corrected (AUDPC*c). F5:6 and F5:7 were evaluated under field conditions in 2004 and 2005, demonstrating a ratio of approximately 1R:3S, which fits with a typical two genes inheritance model.

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30

Wang, Min, Shulin Liu, Shengping Zhang, Han Miao, Guili Tian, Hongwei Lu, Panna Liu, Ye Wang, and Xingfang Gu. "QTL mapping of seedling traits in cucumber using recombinant inbred lines." Plant Breeding 135, no. 1 (December 22, 2015): 124–29. http://dx.doi.org/10.1111/pbr.12331.

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31

Smouse, P. E. "Combining Genetic Information from Two-Point Testcrosses and Recombinant Inbred Lines." Journal of Heredity 79, no. 6 (November 1988): 478–79. http://dx.doi.org/10.1093/oxfordjournals.jhered.a110556.

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32

Yin, X. "Model analysis of flowering phenology in recombinant inbred lines of barley." Journal of Experimental Botany 56, no. 413 (January 24, 2005): 959–65. http://dx.doi.org/10.1093/jxb/eri089.

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33

Liu, Sharon L., and Robert P. Erickson. "GENETICS OF GLUCOCORTICOID RECEPTOR LEVELS IN RECOMBINANT INBRED LINES OF MICE." Genetics 113, no. 3 (July 1, 1986): 735–44. http://dx.doi.org/10.1093/genetics/113.3.735.

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ABSTRACT Hepatic glucocorticoid receptor binding activity was measured in A/J, C57BL/6J, their F1 reciprocal crosses and their F1 recombinant inbred (RI) lines. The glucocorticoid binding capacity was measured in Hepes buffer and Hepes buffer plus dithiothreitol (DTT). The A/J parental strain showed higher levels, and a greater increase of glucocorticoid binding in the presence of DTT, than did the C57BL/6J strain. The response of binding in the presence of DTT to that without DTT was expressed as a ratio. The levels and distribution of these measurements among the RI lines and F1 reciprocal crosses suggested that there was a maternal effect on glucocorticoid receptor binding capacity. The data on RI lines suggested epistatic interactions, but could fit a two-gene model. β2-Microglobulin, β-glucuronidase and H-2 (located on chromosomes 2, 5, and 17, respectively) were chosen to analyze any association to glucocorticoid receptor binding, because they have been considered to be related to glucocorticoid-induced cleft palate or glucocorticoid receptors. No significant associations were found.

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34

Mansur, L. M., J. H. Orf, K. Chase, T. Jarvik, P. B. Cregan, and K. G. Lark. "Genetic Mapping of Agronomic Traits Using Recombinant Inbred Lines of Soybean." Crop Science 36, no. 5 (September 1996): 1327–36. http://dx.doi.org/10.2135/cropsci1996.0011183x003600050042x.

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35

Balasubramanian, Sureshkumar, Christopher Schwartz, Anandita Singh, Norman Warthmann, Min Chul Kim, Julin N. Maloof, Olivier Loudet, et al. "QTL Mapping in New Arabidopsis thaliana Advanced Intercross-Recombinant Inbred Lines." PLoS ONE 4, no. 2 (February 2, 2009): e4318. http://dx.doi.org/10.1371/journal.pone.0004318.

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36

Tsaih, Shirng-Wern, Lu Lu, David C. Airey, Robert W. Williams, and Gary A. Churchill. "Quantitative trait mapping in a diallel cross of recombinant inbred lines." Mammalian Genome 16, no. 5 (May 2005): 344–55. http://dx.doi.org/10.1007/s00335-004-2466-1.

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37

Tao, Longxing, Xi Wang, Huijuan Tan, Haisheng Chen, Changdeng Yang, Jieyun Zhuang, and Kangle Zheng. "Physiological analysis on pre-harvest sprouting in recombinant inbred rice lines." Frontiers of Agriculture in China 1, no. 1 (February 2007): 24–29. http://dx.doi.org/10.1007/s11703-007-0004-0.

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38

Chu, Y., C. C. Holbrook, T. G. Isleib, M. Burow, A. K. Culbreath, B. Tillman, J. Chen, J. Clevenger, and P. Ozias-Akins. "Phenotyping and genotyping parents of sixteen recombinant inbred peanut populations." Peanut Science 45, no. 1 (January 1, 2018): 1–11. http://dx.doi.org/10.3146/ps17-17.1.

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ABSTRACT In peanut (Arachis hypogaea L.), most agronomically important traits such as yield, disease resistance, and pod and kernel characteristics are quantitatively inherited. Phenotypic selection of these traits in peanut breeding programs can be augmented by marker-assisted selection. However, reliable associations between unambiguous genetic markers and phenotypic traits have to be established by genetic mapping prior to early generation marker-assisted selection. Previously, a nested association mapping (NAM) population of 16 recombinant inbred line populations (RILs) consisting 4870 lines was established. In order to facilitate effective mapping of such a large genetic resource, the first objective of the current study was to phenotype the parental lines for yield, pod traits, field maturity, germination, plant morphology, salt tolerance and resistance to tomato spotted wilt virus (TSWV) and late leaf spot (LLS). For most measured traits, more than one parental combination demonstrated statistically significant variation which can be further quantified and mapped in the respective RIL populations. The second objective of this study was to genotype the parental lines using the Arachis Axiom SNP arrays to reveal the marker density of the mapping populations. The Version 1 array identified 1,000 to 4,000 SNPs among the population parents and the number of SNPs doubled on the Version 2 array. Further phenotyping and genotyping of the NAM populations will allow the construction of high density genetic maps containing quantitative trait loci.

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Avdikos, Ilias D., Rafail Tagiakas, Pavlos Tsouvaltzis, Ioannis Mylonas, Ioannis N. Xynias, and Athanasios G. Mavromatis. "Comparative Evaluation of Tomato Hybrids and Inbred Lines for Fruit Quality Traits." Agronomy 11, no. 3 (March 23, 2021): 609. http://dx.doi.org/10.3390/agronomy11030609.

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Tomato is one of the most consumed fruit vegetables globally and is a high dietary source of minerals, fiber, carotenoids, and vitamin C. The tomato is also well known for its nutraceutical chemical content which strengthens human immune systems and is protective against infectious and degenerative diseases. For this reason, there has been recent emphasis on breeding new tomato cultivars with nutraceutical value. Most of the modern tomato cultivars are F1 hybrids, and many of the characteristics associated with fruit quality have additive gene action; so, in theory, inbred vigor could reach hybrid vigor. A sum of 20 recombinant lines was released from the commercial single-cross hybrids Iron, Sahara, Formula, and Elpida, through a breeding process. Those recombinant lines were evaluated during spring–summer 2015 under organic farming conditions in a randomized complete block design (RCBD) experimental design with three replications. A sum of eleven qualitative characteristics of the fruit was recorded on an individual plant basis. Results from this study indicated that the simultaneous selection of individual tomato plants, both in terms of their high yield and desired fruit quality characteristics, can lead to highly productive recombinant lines with integrated quality characteristics. So, inbred vigor can reach and even surpass hybrid vigor. The response to selection for all characteristics evaluated shows additive gene action of all characteristics measured. These recombinant lines can fulfill this role as alternatives to hybrid cultivars and those that possess high nutritional values to function as functional-protective food.

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Okolo, C. T., C. Molina, J. Bulus, P. S. Chindo, and R. U. Ehlers. "Molecular screening of Heterorhabditis bacteriophora inbred lines for polymorphism and genetic crosses for the development of recombinant inbred lines." Nigerian Journal of Biotechnology 36, no. 1 (August 22, 2019): 27. http://dx.doi.org/10.4314/njb.v36i1.4.

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Madakemohekar, AH, SS Bornare, and AS Chavan. "Genetic variabiity and character association for quality traits in recombinant inbred lines derived from inter sub-specific crosses of rice (Oryza sativa L.)." Bangladesh Journal of Botany 43, no. 1 (July 31, 2014): 97–99. http://dx.doi.org/10.3329/bjb.v43i1.19756.

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The investigation was carried out to study the genetic parameters for quality and nutritional characters in 60 recombinant inbred lines (RILs) of rice. Analysis of variance revealed significant differences for all the traits. It was observed that grain yield per plant was positively significant associated with seed width, milling per cent, gelatinization temperature, amylose content and kernel breadth before cooking. Kernel length after cooking, seed width, milling per cent, amylose content and gelatinization temperature had positive direct effect on grain yield. Comprehensive examination of result revealed that the recombinant inbred lines tested for high yield in rice viz., RIL-77, 08, 99, 75, 10 and 13 were identified as superior. DOI: http://dx.doi.org/10.3329/bjb.v43i1.19756 Bangladesh J. Bot. 43(1): 97-99, 2014 (June)

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Markovac, Jasna, and Robert P. Erickson. "The genetics of hormone-induced cyclic AMP production and Phospholipid N-methylation in inbred strains of mice." Genetical Research 45, no. 2 (April 1985): 167–77. http://dx.doi.org/10.1017/s0016672300022096.

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SummaryGenetic variation in hormone-sensitive cyclic AMP production was investigated among inbred strains of mice. Significant strain differences were observed in β-adrenergic- and glucagon-stimulated adenylate cyclase activity. Comparable differences were also found in membrane methyl-transferase I activity in these strains. Our results of studies using F1 progeny of high and low strains suggest a dominance of high MT I activity over low MT I activity. Investigation of recombinant inbred lines between the high and low strains indicates that MT I activity is regulated by at least two major genes; H-2-congenic lines of several inbred strains were then used to identify an association between hormone-stimulated MT I activity and the mouse major histocompatibility complex.

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Demurin, Ya N., Yu V. Chebanova, O. M. Borisenko, T. A. Kovalenko, O. A. Rubanova, and N. V. Ryabovol. "Heritability of oleic acid content in sunflower seed oil of recombinant inbred lines." Oil Crops 183, no. 3 (November 30, 2020): 27–30. http://dx.doi.org/10.25230/2412-608x-2020-3-183-27-30.

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The study of the heritability of the oleic acid content in seed oil in recombinant inbred lines is the genetic basis for effective breeding work on the quality of sunflower oil. The experiments were carried out under field and laboratory conditions in VNIIMK, Krasnodar, Russian Federation in 2016-2020. We used 17 recombinant inbred sunflower lines of I4 and I5 generations obtained from crossing a medium-oleic LG27 line and a high-oleic LG26 line with subsequent self-pollination. The fatty acid composition of sunflower seed oil was analyzed using the method of gas-liquid chromatography of methyl esters on the Chromatek-Kristall 5000 device. Seventeen recombinant inbred sunflower lines in generation I4 showed a wide variation in the content of oleic acid in the oil of average seed samples from 39.00 % (RIL-1) to 92.24 % (RIL-42) and linoleic acid – from 43.28 to 1.35 %, respectively. In 2016, three lines were characterized 28 by an average oleic acid content of 55.64-65.54 %. Analysis of the fatty acid composition of oil in individual seeds of the next generation I5 of these lines confirmed, in general, their phenotypic ranks with a range of variability from 32.18 to 92.15 % in the content of oleic acid. The middle oleic lines RIL-21, RIL29 and RIL-30 also showed belonging to their phenotypic class in 2019 in the range of values from 59.80 to 63.14 %. The study of the conjugate variability of oleic acid values in the parent-progeny series in generations of I4–I5 revealed the presence of a significant strong positive correlation r = 0.97. At the same time, the coefficient of determination, defined as the square of the correlation coefficient which evaluates the degree of heritability of a trait, was 0.95, which indicates a significant influence of the genotype factor in general phenotypic variation.

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Ntanos, D. A., and D. G. Roupakias. "Rice F1 hybrids: the breeding goal or a costly solution?" Australian Journal of Agricultural Research 54, no. 10 (2003): 1005. http://dx.doi.org/10.1071/ar03023.

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Whether to develop inbred cultivars or F1 hybrids is a dilemma faced by many rice (Oryza sativa L.) breeders. This could be partially answered if one could select superior recombinant inbred lines with an equal yielding ability and good quality traits from commercial F1 hybrids. Thus, it was attempted in this study to select superior inbred lines from 2 commercial F1 hybrids after application of honeycomb selection and panicle-to-row selection. The 2 F2 populations were advanced to F6 generation by both methods and, finally, 5 F5:6 lines with high yield potential and good grain quality were selected from each population and selection method and were tested in a randomised complete block design for 2 years in Kalochori, Thessaloniki, Greece. In each case the respective F1 hybrid and the check cultivar Strymonas were used as checks. Fourteen of the 20 lines selected by honeycomb selection and panicle-to-row selection from both populations exhibited a yielding ability that was not significantly different from the yield of the F1 hybrids in both years. Three of them, however, in 1 of the 2 years, had a significantly higher grain yield than the corresponding F1 hybrid. In addition, 6 of the above lines exhibited significantly higher values for more than 1 of the 4 quality traits (total milling yield, grain vitreosity, grain length, and grain length/width ratio) and they were not inferior for the remaining ones. It was concluded that application of combined selection for yield and quality could lead to the isolation of recombinant inbred lines with equal yielding ability and quality equal to or higher than the F1 hybrids. This, together with the higher cost associated with hybrid technology, indicates that the long-term goal of a rice-breeding program should be the production of superior inbred lines, unless hybrid production cost is low and quality is not critical for the particular market.

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Colomé-Tatché, Maria, and Frank Johannes. "Signatures of Dobzhansky–Muller Incompatibilities in the Genomes of Recombinant Inbred Lines." Genetics 202, no. 2 (December 17, 2015): 825–41. http://dx.doi.org/10.1534/genetics.115.179473.

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Kumari, Pummy, Uma Ahuja, R. K. Jain, and R. K. Yadava. "Genetic Analysis of Recombinant Inbred Lines (RILs) of CSR10 x Taraori Basmati." Vegetos- An International Journal of Plant Research 26, no. 1 (2013): 127. http://dx.doi.org/10.5958/j.2229-4473.26.1.019.

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Hui, G. Q., G. Q. Wen, X. H. Liu, H. P. Yang, Q. Luo, H. X. Song, L. Wen, Y. Sun, and H. M. Zhang. "Quantitative trait locus analysis for kernel width using maize recombinant inbred lines." Genetics and Molecular Research 14, no. 4 (2015): 14496–502. http://dx.doi.org/10.4238/2015.november.18.12.

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Shekoofa, Avat, J. Mura Devi, Thomas R. Sinclair, Corley C. Holbrook, and Thomas G. Isleib. "Divergence in Drought-resistance Traits among Parents of Recombinant Peanut Inbred Lines." Crop Science 53, no. 6 (November 2013): 2569–76. http://dx.doi.org/10.2135/cropsci2013.03.0153.

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Broman, Karl W. "Genotype Probabilities at Intermediate Generations in the Construction of Recombinant Inbred Lines." Genetics 190, no. 2 (February 2012): 403–12. http://dx.doi.org/10.1534/genetics.111.132647.

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Kelman, Walter M., and Calvin O. Qualset. "Breeding for Salinity‐Stressed Environments: Recombinant Inbred Wheat Lines under Saline Irrigation." Crop Science 31, no. 6 (November 1991): 1436–42. http://dx.doi.org/10.2135/cropsci1991.0011183x003100060008x.

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