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Relevant bibliographies by topics / Recombinant inbred lines

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Academic literature on the topic 'Recombinant inbred lines'

Author: Grafiati

Published: 4 June 2021

Last updated: 19 February 2022

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Journal articles on the topic "Recombinant inbred lines"

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Burr, B., F. A. Burr, K. H. Thompson, M. C. Albertson, and C. W. Stuber. "Gene mapping with recombinant inbreds in maize." Genetics 118, no. 3 (March 1, 1988): 519–26. http://dx.doi.org/10.1093/genetics/118.3.519.

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Abstract Recombinant inbred lines of maize have been developed for the rapid mapping of molecular probes to chromosomal location. Two recombinant inbred families have been constructed from F2 populations of T232 X CM37 and CO159 X Tx303. A genetic map based largely on isozymes and restriction fragment length polymorphisms has been produced that covers virtually the entire maize genome. In order to map a new gene, an investigator has only to determine its allelic distribution among the recombinant inbred lines and then compare it by computer with the distributions of all previously mapped loci. The availability of the recombinant inbreds and the associated data base constitute an efficient means of mapping new molecular markers in maize.

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Broman, Karl W. "The Genomes of Recombinant Inbred Lines." Genetics 169, no. 2 (November 15, 2004): 1133–46. http://dx.doi.org/10.1534/genetics.104.035212.

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Broman, K. W. "The Genomes of Recombinant Inbred Lines." Genetics 173, no. 4 (August 1, 2006): 2419. http://dx.doi.org/10.1093/genetics/173.4.2419.

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Crow, James F. "Haldane, Bailey, Taylor and Recombinant-Inbred Lines." Genetics 176, no. 2 (June 1, 2007): 729–32. http://dx.doi.org/10.1093/genetics/176.2.729.

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Falque, M. "IRILmap: linkage map distance correction for intermated recombinant inbred lines/advanced recombinant inbred strains." Bioinformatics 21, no. 16 (June 16, 2005): 3441–42. http://dx.doi.org/10.1093/bioinformatics/bti543.

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Kumari, Pummy, Uma Ahuja, Sunita Jain, and R. K. Jain. "Fragrance Analysis among Recombinant Inbred Lines of Rice." Asian Journal of Plant Sciences 11, no. 4 (June 15, 2012): 190–94. http://dx.doi.org/10.3923/ajps.2012.190.194.

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Teuscher, Friedrich, and Karl W. Broman. "Haplotype Probabilities for Multiple-Strain Recombinant Inbred Lines." Genetics 175, no. 3 (December 6, 2006): 1267–74. http://dx.doi.org/10.1534/genetics.106.064063.

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Rockman, Matthew V., and Leonid Kruglyak. "Breeding Designs for Recombinant Inbred Advanced Intercross Lines." Genetics 179, no. 2 (May 27, 2008): 1069–78. http://dx.doi.org/10.1534/genetics.107.083873.

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Tahir, M., and F. J. Muehlbauer. "Gene Mapping in Lentil With Recombinant Inbred Lines." Journal of Heredity 85, no. 4 (July 1994): 306–10. http://dx.doi.org/10.1093/oxfordjournals.jhered.a111464.

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Paran, I., I. Goldman, S. D. Tanksley, and D. Zamir. "Recombinant inbred lines for genetic mapping in tomato." Theoretical and Applied Genetics 90, no. 3-4 (March 1995): 542–48. http://dx.doi.org/10.1007/bf00222001.

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Dissertations / Theses on the topic "Recombinant inbred lines"

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Guess, Adam Joseph. "QTL analysis of ray pattern in Caenorhabditis elegans recombinant inbred lines." Wright State University / OhioLINK, 2008. http://rave.ohiolink.edu/etdc/view?acc_num=wright1205197070.

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Bello, Halima Thelma. "Phenotypic and genotypic evaluation of generations and recombinant inbred lines for response to aflatoxin." [College Station, Tex. : Texas A&M University, 2007. http://hdl.handle.net/1969.1/ETD-TAMU-1359.

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Anderson, James Arthur. "EVALUATION OF SOYBEAN RECOMBINANT INBRED LINES FOR YIELD POTENTIAL AND RESISTANCE TO SUDDEN DEATH SYNDROME." OpenSIUC, 2012. https://opensiuc.lib.siu.edu/theses/837.

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Evaluation of soybean recombinant inbred lines for seed weight yield, agronomic traits, and resistance to sudden death syndrome Sudden death syndrome (SDS) caused by Fusarium virguliforme is a devastating disease in soybean (Glycine max (L.) Merr.) that causes up to 70% of yield losses depending on the developmental stage when the plant become infected. The characterization of resistance is greatly significant for disease management. Therefore, three populations were developed by crossing three resistant lines, `Hamilton', LS90-1920 and LS97-1610 with a susceptible line to SDS, `Spencer'. Ninety-four F5:6 recombinant inbred lines from each population (Hamilton x Spencer, LS90-1920 x Spencer, and LS97-1610 x Spencer) were evaluated for two years (2009 and 2010) at two locations (Carbondale and Valmeyer) in southern Illinois. Population statistics, genotype x environment interaction, and broad-sense heritability were used to reveal any major resistance genes. Genetic correlation coefficients of SDS resistance with important agronomic traits such as lodging, pubescence, growth habit, and plant height were also calculated. The information from this study will be helpful to breeders in developing populations for genetic analyses and enforcing selection practices.

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Cotsapas, Chris Biotechnology &amp Biomolecular Sciences Faculty of Science UNSW. "The genetics of variation in gene expression." Awarded by:University of New South Wales. School of Biotechnology and Biomolecular Sciences, 2005. http://handle.unsw.edu.au/1959.4/30204.

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The majority of genetic differences between species and individuals have been hypothesised to impact on the regulation, rather than the structure, of genes. As the details of genetic variation are uncovered by the various genome sequencing projects, understanding the functional effects on gene regulation will be key to uncovering the molecular mechanisms underying the genesis and inheritance of common phenotypes, such as complex human disease and commercially important traits in plants and animals. Unlike coding sequence polymorphisms, genetic variants affecting gene expression will reside in the transcriptional machinery and its regulatory inputs. As these are largely specific to cell- or tissue-types, we would expect that regulatory variants will also affect final mRNA levels in a tissue specific manner. Genetic variation between individuals may therefore be more complex than the sum total of sequence differences between them. Demonstrating this hypothesis is the main focus of this thesis. We use microarrays to measure mRNA levels of approximately 22,000 transcripts in inbred and recombinant inbred strains of mice, and present compelling evidence that the genetic influences on these levels are tissue-specific in at least 85% of cases. We uncover two loci which apparently influence transcript levels of multiple genes in a tissue-specific manner. We also present evidence that failure of microarray data normalisation may cause spurious linkage of expression phenotypes leading to erroneous biological conclusions, and detail a novel, extensible mathematical framework for performing tailored normalisation which can remove such systematic bias. The wider context of these results is then discussed.

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Clark, William Daniel. "EVALUATION OF RECOMBINANT INBRED LINE POPULATION AND ADVANCED BREEDING LINES AGAINST SUDDEN DEATH SYNDROME IN SOYBEAN [GLYCINE MAX (L.) MERR.]." OpenSIUC, 2014. https://opensiuc.lib.siu.edu/theses/1424.

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Soybeans [Glycine max (L.) Merrill] are a major commercial crop that originated in Eastern Asia, which date back 5,000 years ago in China and are still used worldwide today. Soybeans are considered an oil seed crop that averages twenty percent oil content and consists of thirty-five to forty percent protein. Soybeans are used in most aspects of the modern world as a source of protein for humans and animals alike. It is also used for its oils, which can be found in food, consumables, and plastic. Soybean production came about in the 18th Century in the United States as a hay crop and in some regions as an ornamental plant, but did not start being grown in large-scale production until the early 19th Century. Seed producing companies did not take interest in the plant until 1970, when Congress established the United States Plant Variety Act. This Act allows protection for companies against unauthorized use of proprietary material. Plant breeders focused on improving yield, drought tolerance, and disease resistance. Sudden Death Syndrome (SDS) is a disease of soybeans that affect soybean populations in the Western Hemisphere. SDS is a seedling disease in which a soil-borne fungal infection attacks the roots of a young soybean plant. This infection is more severe in soils highly saturated with water early in the planting year and then followed by cool weather before the soybean plant flowers in late summer. Yield losses commonly do not exceed ten to fifteen percent of a crop, but cases have occurred where yield was reduced over seventy percent due to SDS. Three species that affect the Western Hemisphere; Fusarium virguliforme (FV), formally know as Fusarium solani f. sp. Glycines (FSG); which mainly affects soybean production in the North American continent, Fusarium phaseoli and Fusarium tucumaniae, which affect the South American continent. SDS in the United States can account for yield losses occurring in primarily Arkansas, Iowa, Illinois, Indiana, Kentucky, Missouri, and Tennessee during 1999 to 2002 time period, with Iowa, Illinois, and Indiana having the most severe effects. SDS has rapidly spread throughout the United States and it was estimated to suppress the soybean yield in 2002, with damage that was valued at $157.4 million. There is not a 100 percent proven agronomic practice for controlling SDS, so the identification of host resistant genes are required in order to develop different varieties that will offer the producer the most economically efficient way to manage the disease.

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Anhalt, Ulrike C. M. "Characterisation of the initial generations of recombinant inbred lines in perennial ryegrass (Lolium perenne L.) using molecular markers and cytogenetics." Thesis, University of Leicester, 2009. http://hdl.handle.net/2381/7495.

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Jayatilake, Dimanthi. "A novel quantitative trait loci for fusarium head blight resistance in wheat chromosome 7A." Thesis, Manhattan, Kan. : Kansas State University, 2010. http://hdl.handle.net/2097/4265.

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Shiringani, Amukelani Lacrecia [Verfasser]. "Identification of genomic regions of Sorghum bicolor (L.) Moench linked to biofuel-related traits in grain x sweet sorghum recombinant inbred lines / Amukelani Lacrecia Shiringani." Gießen : Universitätsbibliothek, 2011. http://d-nb.info/1061195546/34.

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Kansu, Cigdem. "Characterization Of Yellow Rust And Stem Rust Resistant And Sensitive Durum Wheat Lines At Molecular Level By Using Biophysical Methods." Master's thesis, METU, 2011. http://etd.lib.metu.edu.tr/upload/12613677/index.pdf.

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Stem rust and Yellow rust diseases are the two major wheat fungal diseases causing considerable yield losses in Turkey and all around the world. There are studies which are carried out to identify and utilize resistance sources in order to obtain resistant lines of wheat. However, virulent pathotypes are continuously being important threats to wheat production and yield. For that reason, new approaches for rapid identification are needed. The aim of this study was to investigate and to understand the structural and functional differences between the resistant and sensitive durum wheat cultivars to the plant fungal diseases of stem and yellow (stripe) rusts. To aim this, forty durum wheat recombinant inbred lines (RILs), which were previously determined to be resistant or sensitive to stem and yellow rust diseases, were investigated by the noninvasive Attenuated Total Reflectance Fourier Transform Infrared (ATR-FTIR) Spectroscopy. Also, classification of the resistant and sensitive lines depending on the structural and functional differences has been attempted. The FTIR spectra for stem rust disease showed that, resistant durum wheat lines had a significant increase in the population of unsaturation in acyl chains of lipid molecules, an increase in lipid and in total protein content and also an increase in carboxylic acids and alcohols. For yellow rust disease, resistant lines had a significant increase in hydrogen bonding and they had also a more ordered membrane structure. In Principal Component Analysis for stem rust disease, according to 3700-650 cm-1 region, amide III band (1213-1273 cm-1 region) and C-H stretching region (3020- 2800 cm-1), the resistant and sensitive groups were separated successfully. For yellow rust disease, according to 3700-650 cm-1 region, Amide A and Amide III bands, the resistant and sensitive lines were grouped distinctly. FTIR spectroscopy provides a useful approach to determine the differences in molecular structure of durum wheat RILs regarding resistance of lines to fungal diseases. However, further research is still needed to ensure if the structural and functional differences in biomolecules of the samples could be used as molecular markers for discrimination of rust resistant materials from rust sensitive ones.

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Briñez, Rodriguez Boris 1975. "Desenvolvimento da plataforma DART e mapeamento de locos associados com tolerância à seca em feijão (Phaseolus vulgaris L.)." [s.n.], 2013. http://repositorio.unicamp.br/jspui/handle/REPOSIP/316986.

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Orientadores: Luciana Lasry Benchimol Reis, Matthew Ward Blair
Tese (doutorado) - Universidade Estadual de Campinas, Instituto de Biologia
Made available in DSpace on 2018-08-23T08:28:45Z (GMT). No. of bitstreams: 1 BrinezRodriguez_Boris_D.pdf: 6826443 bytes, checksum: 0422d2a5e7a57388d0cc9defcf04a3f2 (MD5) Previous issue date: 2013
Resumo: O feijão comum (Phaseolus vulgaris L.) é uma cultura importante economicamente tanto para o consumo nacional como para a exportação. A seca é um dos principais estresses abióticos em todo o mundo e afeta cerca de 60% da área de cultivo de feijão. O avanço nas tecnologias de marcadores moleculares oferecem poderosos métodos para examinar as relações entre as características, gerando um grande volume de informações potencialmente úteis para assessorar os programas de melhoramento. O presente projeto teve como objetivo o desenvolvimento da Plataforma DArT para feijão comum junto à empresa DArT Pty Ltd, e o mapeamento destes marcadores juntamente com microssatélites e SNPs na população AND 277 x SEA 5 proveniente do CIAT (Colômbia), a fim de localizar os QTLs associados à tolerância à seca. O genitor SEA 5 é uma linhagem avançada do BAT 477, é tolerante à seca e de origem Mesoamericano e o genitor AND 277 é um genótipo resistente à mancha angular e antracnose e de origem Andina. Um total de 4.468 marcadores DArTs, 288 marcadores SNPs e 180 marcadores microssatélites polimórficos foram identificados na população e utilizados na genotipagem para construir um mapa genético saturado. A fenotipagem das 105 linhagens endogâmicas recombinantes (RILs) na geração F8 mais os dois genitores foi realizada avaliando 18 características associadas à tolerância a seca utilizando um delineamento inteiramente casualizado com quatro repetições, aplicando um estresse terminal na fase vegetativa V3/V4. Dois mapas foram construídos, um integrando 80 SSR e 251 SNPs e outro com cinco SSR, 91 SNPs e 4.468 DArTs. A identificação dos QTLs foi realizada através da análise de mapeamento por intervalo composto (CIM) para o mapa SSR - SNPs e mapeamento de precisão (SML) para o mapa SSR-SNPs-DArT. Um total de 12 QTLs foram identificados para o tratamento não irrigado e 29 QTLs para o tratamento irrigado pela análise CIM. Para as análises SML, 23 QTLs foram identificados para o tratamento não irrigado e 11 QTLs para o irrigado. QTLs de maior efeito foram encontrados para clorofila, biomassa fresca do caule e da folha, Massa seco da folia, temperatura da folha, número de vagens, número de sementes, massa de sementes, dias para florescimento, massa seca das vagens e produtividade nos dois tratamentos. Todos os QTLs detectados sob condições de seca apresentaram o alelo do genitor SEA 5. Este estudo é importante para o melhoramento genético não só para entender melhor a herança genética de uma característica tão complexa como a tolerância à seca, bem como para encontrar ferramentas moleculares a serem utilizados para a seleção assistida por marcadores
Abstract: Common bean (Phaseolus vulgaris L.) is the most important food legume for consumption and for exportation. Drought is one of the main abiotic stresses in the world and affects about 60% of bean growing area across the world. The advance in technologies of molecular markers provide a powerful method to examine the relationships between traits, generating large amount of potentially useful information to assist the breeding programs. The objective of this project was the development of DArT platform for common beans with DArT Pty Ltd and the mapping of these markers with microsatellites and SNPs in the population AND 277 x SEA 5 from CIAT (Colombia), in order to locate the QTLs associated with drought tolerance. The SEA 5 parent is a drought tolerant advanced line (Mesoamerican) and the AND 277 is resistant to the angular leaf spot and antracnose (Andean). A total of 4.468 DArT markers, 288 SNP and 180 SSR polymorphic markers were identified in the population and used in genotyping to constructed a saturated genetic map. Phenotyping of 105 recombinant inbred lines (RILs) in F8 generation plus the genitors were performed evaluating 18 traits associated with drought tolerance using a completely randomized design with four replicates, applying terminal stress at vegetative phase V3/V4. Two maps were constructed, one integrating 80 SSR and 251 SNPs and another with five SSR, 91 SNPs and 4,468 DArTs. The identification of QTL analysis was performed by composite interval mapping (CIM) for the SSR - SNPs map and the precision mapping (SML) to map DArT-SSR-SNPs. A total of 12 QTLs were identified for the non-irrigated treatment and 29 QTLs for the irrigated treatment by CIM analysis. For SML analysis, 23 QTLs were identified for the non-irrigated and 11 QTLs for irrigated treatment. QTLs of major effect was found for chlorophyll, fresh biomass of stem and leaf dry weight, leaf temperature, number of pods, number of seeds, seed weight, days to flowering, dry weight of pods and yield in both treatments. All QTLs detected under dry conditions showed the allele of parent SEA 5. This study is important for genetic improvement not only to better understand the genetic inheritance of a trait as complex as drought tolerance, as well as to find molecular tools to be used for marker assisted selection
Doutorado
Genetica Vegetal e Melhoramento
Doutor em Genetica e Biologia Molecular

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Book chapters on the topic "Recombinant inbred lines"

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Priyadarshan, P. M. "Recombinant Inbred Lines." In PLANT BREEDING: Classical to Modern, 257–68. Singapore: Springer Singapore, 2019. http://dx.doi.org/10.1007/978-981-13-7095-3_13.

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Pollard, Daniel A. "Design and Construction of Recombinant Inbred Lines." In Methods in Molecular Biology, 31–39. Totowa, NJ: Humana Press, 2012. http://dx.doi.org/10.1007/978-1-61779-785-9_3.

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Alonso-Blanco, Carlos, Maarten Koornneef, and Piet Stam. "The Use of Recombinant Inbred Lines (RILs) for Genetic Mapping." In Arabidopsis Protocols, 137–46. Totowa, NJ: Humana Press, 1998. http://dx.doi.org/10.1385/0-89603-391-0:137.

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Oda, M., H. Yasui, and A. Yoshimura. "QTL analysis for heading date using recombinant inbred lines in rice." In Advances in Rice Genetics, 240–43. World Scientific Publishing Company, 2008. http://dx.doi.org/10.1142/9789812814319_0091.

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Hartl, Daniel L. "Inbreeding and Population Structure." In A Primer of Population Genetics and Genomics, 47–74. Oxford University Press, 2020. http://dx.doi.org/10.1093/oso/9780198862291.003.0003.

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Inbreeding and its consequences are the main subject of Chapter 3, beginning with the concepts of identity by descent versus identity by state, the inbreeding coefficient F, genotype frequencies with inbreeding, and calculation of the inbreeding coefficient from pedigrees. Inbreeding and heterosis are discussed along with the effects of inbreeding in humans and other organisms, regular systems of mating (selfing and partial selfing, sib mating), and the utility of recombinant inbred lines. The chapter emphasizes the intimate connection between inbreeding and hierarchical population structure as measured by the F-statistics.

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PERERA, A. L. T., D. SENADHIRA, and M. J. LAWRENCE. "GENETIC ARCHITECTURE OF ECONOMICALLY IMPORTANT CHARACTERS AND PREDICTION OF PERFORMANCE OF RECOMBINANT INBRED LINES IN RICE." In Rice Genetics Collection, 565–78. World Scientific Publishing Company, 2008. http://dx.doi.org/10.1142/9789812814265_0050.

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Tsunematsu, H., A. Yoshimura, M. Yano, and N. Iwata. "Quantitative trait locus analysis using recombinant inbred lines and restriction fragment length polymorphism markers in rice." In Rice Genetics Collection, 619–23. World Scientific Publishing Company, 2008. http://dx.doi.org/10.1142/9789812814289_0074.

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Conference papers on the topic "Recombinant inbred lines"

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Hanson, L. E., R. M. Beaudry, T. R. Goodwill, and J. M. McGrath. "RESPONSE OF SUGAR BEET RECOMBINANT INBRED LINES TO POST-HARVEST ROT FUNGI." In 37th Biennial Meeting of American Society of Sugarbeet Technologist. ASSBT, 2013. http://dx.doi.org/10.5274/assbt.2013.26.

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McGrath, J. Mitchell, Teresa K. Koppin, and Tim M. Duckert. "Breeding for genetics: development of Recombinant Inbred Lines (RIL's) for gene discovery and deployment." In 33rd Biennial Meeting of American Society of Sugarbeet Technologist. ASSBT, 2005. http://dx.doi.org/10.5274/assbt.2005.28.

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Zeng, Ya-Wen, Lu-Xiang Wang, Juan Du, Xiao-Meng Yang, Xiao-Ying Pu, Li-Juan Du, Tao Yang, Jia-Zhen Yang, and Shu-Ming Yang. "Mineral Elements in Barley Grass Powder and its Grains for Recombinant Inbred Lines by ICP-AES." In 2015 International Conference on Medicine and Biopharmaceutical. WORLD SCIENTIFIC, 2016. http://dx.doi.org/10.1142/9789814719810_0151.

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Kumarapeli, K. A. Dinithi. "The impact of moderate heat stress on reproductive traits of wheat lines from a recombinant inbreed population segregating for sensitivity to heat stress with respect to grain yield." In ASPB PLANT BIOLOGY 2020. USA: ASPB, 2020. http://dx.doi.org/10.46678/pb.20.1053031.

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