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Journal articles on the topic "Rape (Plant) – Genetics"
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Koprna, R. "Winter oilseed rape Oksana." Czech Journal of Genetics and Plant Breeding 43, No. 2 (January 7, 2008): 71–72. http://dx.doi.org/10.17221/1907-cjgpb.
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Durstewitz, G., A. Polley, J. Plieske, H. Luerssen, E. M. Graner, R. Wieseke, and M. W. Ganal. "SNP discovery by amplicon sequencing and multiplex SNP genotyping in the allopolyploid species Brassica napusThis article is one of a selection of papers from the conference “Exploiting Genome-wide Association in Oilseed Brassicas: a model for genetic improvement of major OECD crops for sustainable farming”." Genome 53, no. 11 (November 2010): 948–56. http://dx.doi.org/10.1139/g10-079.
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Oilseed rape ( Brassica napus ) is an allotetraploid species consisting of two genomes, derived from B. rapa (A genome) and B. oleracea (C genome). The presence of these two genomes makes single nucleotide polymorphism (SNP) marker identification and SNP analysis more challenging than in diploid species, as for a given locus usually two versions of a DNA sequence (based on the two ancestral genomes) have to be analyzed simultaneously during SNP identification and analysis. One hundred amplicons derived from expressed sequence tag (ESTs) were analyzed to identify SNPs in a panel of oilseed rape varieties and within two sister species representing the ancestral genomes. A total of 604 SNPs were identified, averaging one SNP in every 42 bp. It was possible to clearly discriminate SNPs that are polymorphic between different plant varieties from SNPs differentiating the two ancestral genomes. To validate the identified SNPs for their use in genetic analysis, we have developed Illumina GoldenGate assays for some of the identified SNPs. Through the analysis of a number of oilseed rape varieties and mapping populations with GoldenGate assays, we were able to identify a number of different segregation patterns in allotetraploid oilseed rape. The majority of the identified SNP markers can be readily used for genetic mapping, showing that amplicon sequencing and Illumina GoldenGate assays can be used to reliably identify SNP markers in tetraploid oilseed rape and to convert them into successful SNP assays that can be used for genetic analysis.
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Savic, Jasna, Ana Marjanovic-Jeromela, Djordje Glamoclija, and Slaven Prodanovic. "Oilseed rape genotypes response to boron toxicity." Genetika 45, no. 2 (2013): 565–74. http://dx.doi.org/10.2298/gensr1302565s.
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Response of 16 oilseed rape genotypes to B (boron) toxicity was analyzed by comparing the results of two experiments conducted in a glasshouse. In Experiment 1 plants were grown in standard nutrient solutions with 10 ?MB (control) and 1000 ?M B. Relative root and shoot growth varied from 20-120% and 31-117%, respectively. Variation in B concentration in shoots was also wide (206.5-441.7 ?g B g-1 DW) as well as total B uptake by plant (62.3-281.2 ?g B g1). Four selected genotypes were grown in Experiment 2 in pots filled with high B soil (8 kg ha-1 B; B8). Shoot growth was not affected by B8 treatment, while root and shoot B concentration was significantly increased compared to control. Genotypes Panther and Pronto which performed low relative root and shoot growth and high B accumulation in plants in Experiment 1, had good growth in B8 treatment. In Experiment 2 genotype NS-L-7 had significantly lower B concentration in shots under treatment B8, but also very high B accumulation in Experiment 1. In addition, cluster analyses classified genotypes in three groups according to traits contrasting in their significance for analyzing response to B toxicity. The first group included four varieties based on their shared characteristics that have small value for the relative growth of roots and shoots and large values of B concentration in shoot. In the second largest group were connected ten genotypes that are heterogeneous in traits and do not stand out on any characteristic. Genotypes NS-L-7 and Navajo were separated in the third group because they had big relative growth of root and shoot, but also a high concentration of B in the shoot, and high total B uptake. Results showed that none of tested genotypes could not be recommended for breeding process to tolerance for B toxicity.
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da Silva, Paulo M. F. R., Peter J. Eastmond, Lionel M. Hill, Alison M. Smith, and Stephen Rawsthorne. "Starch metabolism in developing embryos of oilseed rape." Planta 203, no. 4 (November 20, 1997): 480–87. http://dx.doi.org/10.1007/s004250050217.
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Parkin, I. A. P., A. G. Sharpe, D. J. Keith, and D. J. Lydiate. "Identification of the A and C genomes of amphidiploid Brassica napus (oilseed rape)." Genome 38, no. 6 (December 1, 1995): 1122–31. http://dx.doi.org/10.1139/g95-149.
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A genetic linkage map consisting of 399 RFLP-defined loci was generated from a cross between resynthesized Brassica napus (an interspecific B. rapa × B. oleracea hybrid) and "natural" oilseed rape. The majority of loci exhibited disomic inheritance of parental alleles demonstrating that B. rapa chromosomes were each pairing exclusively with recognisable A-genome homologues in B. napus and that B. oleracea chromosomes were pairing similarly with C-genome homologues. This behaviour identified the 10 A genome and 9 C genome linkage groups of B. napus and demonstrated that the nuclear genomes of B. napus, B. rapa, and B. oleracea have remained essentially unaltered since the formation of the amphidiploid species, B. napus. A range of unusual marker patterns, which could be explained by aneuploidy and nonreciprocal translocations, were observed in the mapping population. These chromosome abnormalities were probably caused by associations between homoeologous chromosomes at meiosis in the resynthesized parent and the F1 plant leading to nondisjunction and homoeologous recombination.Key words: genetic linkage map, homoeologous recombination, Brassica rapa, Brassica oleracea, genome organization.
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Rood, Stewart B., David Pearce, and Richard P. Pharis. "Identification of Endogenous Gibberellins from Oilseed Rape." Plant Physiology 85, no. 3 (November 1, 1987): 605–7. http://dx.doi.org/10.1104/pp.85.3.605.
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Warwick, S. I., T. James, and K. C. Falk. "AFLP-based molecular characterization of Brassica rapa and diversity in Canadian spring turnip rape cultivars." Plant Genetic Resources 6, no. 1 (April 2008): 11–21. http://dx.doi.org/10.1017/s1479262108923819.
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Information on genetic diversity and genetic relationships among taxa of Brassica rapa (n = 10, AA genome) is currently limited. Grown for oil, vegetable and fodder use in Europe and Asia, previous studies have indicated western and eastern groups corresponding to independent centres of origin. This study evaluated patterns and levels of genetic diversity in 93 accessions [includes 25 Agriculture and Agri-Food Canada (AAFC) breeding lines (BL)] of B. rapa based on 307 amplified fragment length polymorphisms (AFLP), testing subspecific separateness and the affiliation of four previously unassigned AA genome species (B. perviridis, B. purpuraria, B. ruvo and B. septiceps). AFLP data revealed three main clusters (I, II, III) corresponding to European (I), Indian (III), and a mixed Asian/European/Indian (II) purported origins of the taxa, with several subclusters observed in I and II. Mean AFLP polymorphism levels for Asian, European, Indian and AAFC-BL accessions were 79, 74, 66 and 62%, respectively. Few of the subspecies formed unique clusters and some, particularly subspecies chinensis and pekinensis, were assigned to several clusters. AFLP-based genetic distance information can be used by breeders to select diverse genotypes for cultivar development and fingerprinting of genotypes/cultivars. For example, a single AFLP primer pair was sufficient to uniquely identify all breeding lines in the AAFC B. rapa breeding programme.
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Marinkovic, Radovan, Ana Marjanovic-Jeromela, and Dragana Vasic. "Genetic variability components of some quantitative traits of winter oilseed rape - Brassica napus L." Genetika 35, no. 3 (2003): 199–205. http://dx.doi.org/10.2298/gensr0303199m.
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Analysis of genetic variance components for number of leaves and branches per plant and stem diameter was done according to the method of HAYMAN (1954). Heritability in narrow (h2a) and broad (h2b) sense was determined for the same traits, using the method of Mather and Jinks (1971). Non-additive component of genetic variance was greater than additive component in all three studied traits. Dominant and recessive genes were not equally distributed in parent genotypes, with dominant genes prevailing. Ratio (H1/D)1/2 was higher than 1 in all three tested traits. Calculated values for heritability in narrow sense showed that stem diameter and number of branches per plant are traits with low heritability, and number of leaves per plant a trait with the high heritability. Heritability in a broad sense Was high for all three tested traits.
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Abedi, T., and H. Pakniyat. "Antioxidant enzymes changes in response to drought stress in ten cultivars of oilseed rape (Brassica napus L.)." Czech Journal of Genetics and Plant Breeding 46, No. 1 (March 4, 2010): 27–34. http://dx.doi.org/10.17221/67/2009-cjgpb.
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The study was undertaken to identify the responses of antioxidant enzyme activities and their isozyme patterns in seedlings of 10 oilseed rape (Brassica napus L.) cultivars under drought stress conditions. Plants were grown under three irrigation regimes (FC; field capacity, 60% FC and 30% FC) in a greenhouse. Drought stress preferentially enhanced the activities of superoxide dismutase (SOD) and guaiacol peroxidase (POD) whereas it decreased catalase (CAT) activity. Licord with the highest level of enzyme activity under both optimum and limited irrigation regimes is reported as the most tolerant cultivar. Whereas Hyola 308 and Okapy, having the lowest enzymes activities, are mentioned as cultivars sensitive to drought stress. The native polyacrylamide gel electrophoresis (PAGE) analysis detected eight SOD isozymes. Oilseed rape leaves contained three isoforms of Mn-SOD and five isoforms of Cu/Zn-SOD. The expression of Mn-SOD was preferentially enhanced by drought stress. Five POD isoforms were detected in oilseed rape leaves. The intensities of POD-4 and -5 were enhanced under drought stress. According to the results, the appearance of new isozyme bands under drought stress conditions may be used as a biochemical marker to differentiate drought tolerant cultivars under drought stress.
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NOVOTNA, Z. "Purification and characterisation of rape seed phospholipase D." Plant Physiology and Biochemistry 37, no. 7 (July 1999): 531–37. http://dx.doi.org/10.1016/s0981-9428(99)00150-3.
Full textDissertations / Theses on the topic "Rape (Plant) – Genetics"
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Stangoulis, James Constantine Roy. "Genotypic variation in oilseed rape to low boron nutrition and the mechanism of boron efficiency." Title page, contents and summary only, 1998. http://web4.library.adelaide.edu.au/theses/09PH/09phs7856.pdf.
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Bibliography: leaves 132-159. Boron efficiency in oilseed rape (Brassica napua L. and B. juncea L.) was investigated in a wide range of genotypes. Using a solution culture screening of 10 day old seedlings, root length best described shoot growth response, and was used to characterise a total of 65 genotypes. Varieties and breeders lines tolerant of B-deficient growing conditions were identified, and the screening process validated through field trials. B responses in plants sampled at the 'green bud' stage indicated that vegetative growth is important in B efficiency. Studies were conducted to investigate the mechanism of B efficiency in oilseed rape. Results suggest no association between B efficiency and the capacity to acidify the root rhizosphere, or an increased translocation of B from root to shoot. Boron retranslocation was also studied as a mechanism of B efficiency.
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Pollock, Stephanie. "A study of genetic diversity and genome organization of Brassica napus using EST (expressed sequence tags) of Arabidopsis and SSR (simple sequence repeat) markers of B. napus /." Thesis, McGill University, 2001. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=33023.
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Arabidopsis expressed sequence tags (ESTs) and microsatellites of Brassica napus have been developed and used as PCR-based markers for both mapping and genetic diversity studies in B. napus . Out of 300 random Arabidopsis ESTs screened, 43 markers were mapped onto a genetic map of B. napus and then used in a diversity study involving 48 B. napus cultivars. A second set of EST markers were developed from chromosome 1 of Arabidopsis and used in genetic mapping studies of B. napus. From 192 primer pairs developed, 50 markers were added onto the B. napus reference map. Microsatellite markers were developed using a "GA" enriched genomic library from B. napus. From 152 designed primer pairs, 23 markers were added onto the B. napus reference map. Microsatellite markers were also used in genetic diversity studies of B. napus, where, from the 152 primer pairs, 40 revealed polymorphism between the 48 B. napus cultivars.
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Schelfhout, Christopher James. "DNA marker assisted breeding in interspecific crosses to improve canola (Brassica napus L.)." University of Western Australia. School of Plant Biology, 2008. http://theses.library.uwa.edu.au/adt-WU2008.0167.
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[Truncated abstract] In order to expand the gene pool of canola-quality rapeseed (Brassica napus) reciprocal interspecific crosses were made between B. napus cv. Mystic and near canola-quality B. juncea breeding line JN29. F1 progeny from these crosses were used to make backcrosses to both parents in all possible combinations and directions, and were selfed to form F2-derived lines. The highest frequencies of viable F2 and BC1 progeny were obtained when B. napus was the maternal parent of the interspecific hybrid. BC1 and F2 progeny (and subsequent generations) were grown under field conditions to identify agronomic improvements over the parents. Transgressive segregation was observed in F2 and BC1 and in subsequent generations for agronomic traits (seed yield under high or low rainfall conditions, plant biomass, harvest index, height, branching and days to anthesis) and seed quality traits (oil, protein, glucosinolates, oleic acid). The majority of progeny conformed to B. napus morphology, and a minority segregated to B. juncea morphology in subsequent generations. Some of the B. juncea morphotypes had lower glucosinolates and higher oleic acid than the parent JN29, with no detectable erucic acid, and thereby conformed to canola quality. Methods were developed for tracing B-genome in interspecific progeny. A repetitive DNA sequence pBNBH35 from B. nigra (genome BB, 2n = 16) was used to identify B-genome chromosomes and introgressions in interspecific progeny. Specific primers were designed for pBNBH35 in order to amplify the repetitive sequence by PCR. A cloned sub-fragment of 329 bp was confirmed by sequencing as part of pBNBH35. PCR and hybridisation techniques were used on an array of Brassica species to confirm that the pBNBH35 subfragment was Brassica B-genome specific. Fluorescence in situ hybridisation (FISH) in B nigra, B. juncea (AABB, 2n=36) and B. napus (AACC, 2n=38) showed that the pBNBH35 sub-fragment was present on all eight Brassica Bgenome chromosomes and absent from A- and C-genome chromosomes. The pBNBH35 repeat was localised to the centromeric region of each B-genome chromosome. FISH clearly distinguished the B-genome chromosomes from the A-genome chromosomes in the amphidiploid species B. juncea. This is the first known report of a B-genome repetitive marker that is present on all Brassica Bgenome chromosomes. ... The results suggest that novel B. napus genotypes have been generated containing introgressions of B-genome chromatin from B. juncea chromosomes. B. juncea morphology occurred in interspecific progeny with a chromosome complement similar to B. napus (2n = 38) and without the entire Bgenome present. It also is highly likely that recombination has occurred between the A-genome of the two Brassica species. This research has demonstrated that the secondary gene pool of B. napus may be accessed by selfing interspecific hybrids, and without sacrificing canola quality, if the B. juncea parent is near canola-quality. Interspecific progeny may be screened to enhance the proportion with B-genome positive signals. Some progeny with B. junceatype morphology had improved seed quality over the JN29 parent.
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Geddy, Rachel Gwyneth. "Location and expression of genes related to the cytoplasmic male sterility system of Brassica napus." Thesis, McGill University, 2006. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=100608.
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Cytoplasrnic male sterility (CMS) is a maternally inherited defect in the production of pollen, the male gamete of the flower. This sterility can be suppressed by nuclear Restorer of Fertility (Rf) genes that normally downregulate the expression of the CMS-associated novel mitochondrial gene. In Brassica napus, nap CMS and pol CMS are associated with related chimeric mitochondrial genes orf222 and orf224, respectively. CMS in both nap and pol is associated with a polar loss of locule development, loss of synchronous locule development and clumping of sporogenous tissue away from the tapetal cell layer, as well as secondary effects on petal and bud formation. In nap CMS, early accumulation of orf222 transcripts in the locule regions of developing anthers is associated with sterility, while the absence of orf222 transcripts from the locules is associated with fertility restoration. Accumulation of novel antisense transcripts of atp6 in a cell specific manner which matches that of sense transcripts of orf222 and atp6 in nap CMS anthers may be indicative of a post-transcriptional regulatory mechanism associated with CMS in flower buds.Restoration of fertility in Brassica napus nap and pol CMS is associated with nuclearly encoded genes Rfn and Rfp, respectively. These restorers are very closely linked to one another, and may be allelic. Further efforts to isolate Rfp have narrowed the genomic region to approximately 105 kb of a syntenic region in Arabidopsis thaliana. Cosmid clones isolated from a library of Brassica rapa genomic DNA introgressed with Rfp have been successfully sorted into contigs through the application of the amplified fragment length polymorphism technique. The region to which Rfp is mapped is syntenic to a region of Arabidopsis DNA that is a duplication of a second location at the 23 megabase region of chromosome 1 of that genome. This region contains pentatricopeptide (PPR) motif-encoding genes that are highly related to other restorers of fertility of other species. By inference, Rfp from Brassica napus may encode PPR motifs. The PPR genes related to these previously characterized restorers of fertility are often found alongside the restorer genes existing as mini-clusters of several PPR-encoding genes. This is likely caused by selective pressure acting on PPR-encoding genes that resulted in diversification and multiplication of these genes. In addition, the PPR genes of this duplicated region are not syntenically located, whereas the non-PPR-encoding genes maintain their syntenic locations. The same is true for orthologous comparisons between Arabidopsis and other plant species. PPR genes are therefore malleable and capable of alteration in response to changing environmental pressures, such as the evolution of sterility inducing genes.
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Fiebelkorn, Wrucke Danielle. "Genetic Analysis of Frost Tolerance in Rapeseed/Canola (Brassica Napus L.)." Diss., North Dakota State University, 2017. https://hdl.handle.net/10365/28362.
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Frost can be detrimental to canola (Brassica napus L.) production. Depending on the severity, the entire field can be killed. Having frost tolerance in canola would benefit growers by allowing them to plant early, utilize early season moisture, and avoid high heat during flowering. However, frost tolerance in canola has not been well studied. A protocol was developed that determined 14 day old seedlings should be acclimated at 4?C for 7 days before being exposed to overnight frost (-4?C) in a small freezing chamber. However, when a larger chamber was used for freezing, the protocol was optimized to -8?C instead. A greenhouse study was conducted on a diverse collection of 231 genotypes and genome-wide association scan (GWAS) was conducted to identify potential genes that were related to frost tolerance or abiotic stress tolerance. Thirty-eight significant single nucleotide polymorphism (SNP) markers were selected based on 10,000 bootstraps and 0.1 percent tail of the empirical distribution. The markers were located on chromosomes A01, A02, A03, A04, A07, A08, A09, A10, C03, C05, C06, C07, and C09. Stepwise regression highlighted a QTL located on chromosomes A02. Another GWAS was done on 147 canola germplasm lines phenotyped under natural conditions. Thirty-eight significant SNPs identified from this study were located on chromosomes A05, A07, A09, C01, C02, C03, C04, C05, C06, C07, and C09. Stepwise regression identified a QTL located on chromosome C04. A protocol was developed to measure the freezing induced electrolyte leakage from leaves of rapeseed/canola. A total of 157 germplasm lines were evaluated for freezing induced (-12?C for 2 h) electrolyte leakage. Thirty-six significant SNPs located on chromosomes A01, A02, A03, A04, A05, A06, A07, A08, A09, A10, C01, C02, C04, C05, C06, C07, and C09 were identified. Stepwise regression identified 10 QTL located on chromosomes A01, A02, A04, A06, A07, C02, C05, C07, C09, and one that could not be assigned. All GWAS studies identified potential genes of interest that were related to frost tolerance, abiotic stress, and transcription factors.Northern Canola Growers Association
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McCue, Kimberlie A. "The ecological genetics of rarity : a study of genetic structure, inbreeding and seed bank dynamics in a rare annual plant /." free to MU campus, to others for purchase, 1997. http://wwwlib.umi.com/cr/mo/fullcit?p9841324.
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McCracken, Carrie L. "Genetic Relationships Between Two Rare Plant Species, Aliciella caespitosa and A. tenuis, and Their Putative Progenitor, A. subnuda." DigitalCommons@USU, 2001. https://digitalcommons.usu.edu/etd/7333.
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Isolated populations have potential to become new species that should have less genetic variation than their ancestors. Small populations are more likely to lose genetic variation, which is, thus, expected to be greater in ancestors. Aliciella caespitosa and A. tenuis, two endemic species, may be derived from small populations of A. subnuda, a widespread species. Chloroplast DNA sequences were used to test this hypothesis. Allozyme data were used to compare genetic variation and numbers of alleles. Chloroplast data do not support the proposed relationships between A. subnuda and the other two species. Allozyme data were not more variable in A. subnuda. The data suggest that A. tenuis is derived from A. caespitosa, although the former did not show lower allozyme diversity. I detected fewer alleles in A. tenuis. These data suggest that the original population of A. tenuis was not small enough to lose genetic variation relative to its progenitor.
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Jean, Martine. "Genetic mapping of restorer genes for cytoplasmic male sterility in Brassica napus using DNA markers." Thesis, McGill University, 1995. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=40147.
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DNA markers tightly-linked to nuclear fertility restorer genes for cytoplasmic male sterility (CMS) are valuable tools for breeders and researchers working with these genes. Two different targeting approaches were used to identify markers linked to the Rfp1 restorer gene for the pol CMS of canola (Brassica napus L.): nearly isogenic line (NIL) comparison and bulked segregant analysis. These methods were equally efficient in identifying markers linked to Rfp1; combining them allowed a targeting efficiency of 100% to be achieved. The efficiency of bulked segregant analysis was found to be limited by the inadvertent occurrence of shared homozygosity at specific chromosomal regions in the bulks, in contrast with the efficiency of NIL comparison which was limited by the occurrence of residual DNA from the donor cultivar at scattered sites around the genome of the NILs. Eleven DNA markers linked to the Rfp1 gene were identified, one of which perfectly co-segregates with Rfp1. The linkage group on which Rfp1 is localized contains 17 DNA markers. Two restorer genes of the pol CMS, Rfp1 and Rfp2, and a Rfn restorer gene of the nap CMS were found to be at least tightly linked to one another and may all reside at the same locus. A fourth restorer gene, the Rfo restorer for the ogu CMS, was, however, found to be unlinked to the other restorer genes. Different restorer genes for the nap CMS were found in the lines 'Westar-Rf and 'Karat'. A linkage map of the B. napus genome containing 146 markers organized into 23 linkage groups covering a total length of 850.2 cM was constructed from a BC$ sb1$ population. This map contains 63 loci previously localized on the B. napus genome through analysis of an F$ sb2$ population. Comparative analysis indicates that the total length of the BC$ sb1$-derived map is smaller than that of the F$ sb2$-derived map, which suggests that a reduction in recombination frequency is occurring in male gametes. The preferential use of two or three probe-
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Babwah, Andy Videsh. "Development and application of biotechnological tools in the major crop plant, Brassica napus." Thesis, McGill University, 2001. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=37867.
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A two-component transposable element system consisting of a stabilized Activator (Acst) and a chimeric Dissociation (Ds) element has been introduced into the genome of Brassica napus. This Acst/ Ds system incorporates the use of several highly effective screenable and selectable markers. One of these markers is the maize Lc gene, a transcriptional regulator of flavonoid biosynthetic genes. This substrate-independent screenable marker was tested for the first time in B. napus and I show that when overexpressed, there is augmented trichome production and a light-dependent, enhanced accumulation of anthocyanins in B. napus plants. The phenotypes are expressed under a wide range of conditions, are visually distinct, and are observed throughout plant development. When used as a visual marker for the Acst element, Lc B. napus plants were rapidly identified among F2 segregating populations. As part of my goal to develop a very efficient Acst/Ds system for use in B. napus, a conditional negative selectable marker, the E. coli codA gene, was also tested for the first time in B. napus. This was done because use of a substrate-dependent negative selectable marker can facilitate the rapid and reliable identification of stable Ds transposition events when used as a marker for the Acst T-DNA. The enzyme cytosine deaminase, encoded by the codA gene, catalyzes the deamination of the non-toxic compound 5-fluorocytosine (5-FC) to the highly toxic compound 5-fluorouracil. In codA transformed B. napus seedlings, expression of cytosine deaminase results in a severe suppression of growth and this phenotype is dependent on the presence of the 5-FC substrate. Wild-type seedlings, however, lack endogenous cytosine deaminase activity and appear unaffected by the presence of 5-FC in the growth media. These results indicate that codA has the potential to be used effectively in B. napus as a substrate-dependent negative selectable marker for the Acst T-DNA. To determine if Ac transposase cou
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Hamel, Nancy. "Nuclear regulation of mitochondrial gene expression in Brassica napus." Thesis, McGill University, 1996. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=27331.
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Previous studies have shown that transcriptional differences in the orf224-atp6 mitochondrial gene region are correlated with fertility restoration of the pol CMS trait by the dominant nuclear Rfp gene in Brassica napus. Recently, the recessive rfp allele, or a tightly linked gene, was found to act as a dominant gene, designated Mmt, in controlling the production of additional, smaller transcripts of two other mitochondrial loci. The results presented in this thesis reveal that Mmt-specific transcripts lack sequences found at the $5 sp prime$ end of the full-length transcripts of these loci and contain a common sequence, UUGUGG, which maps immediately downstream of their $5 sp prime$ termini. A similar sequence, UUGUUG, is found within orf224 downstream of the major Rfp-specific $5 sp prime$ transcript terminus; these hexanucleotide sequences may serve as recognition motifs in the generation of Mmt- and Rfp-specific transcripts. These results suggest that Rfp/Mmt is a novel nuclear locus affecting the expression of multiple mitochondrial gene regions, with different alleles or haplotypes affecting different mitochondrial genes.
Books on the topic "Rape (Plant) – Genetics"
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Engqvist, Gabriele. Biometrical genetics of oilseed rape: Selection among crosses in F3̳. Svalöv: Swedish University of Agricultural Sciences, Dept. of Plant Breeding Research, 1993.
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Osipova, G. M. Raps v Sibiri: Morfobiologicheskie, geneticheskie i selekt͡s︡ionnye aspekty. Novosibirsk: Rossiĭskai͡a︡ akademii͡a︡ s.-kh. nauk, Sibirskoe otd-nie, Sibirskiĭ nauchno-issl. in-t kormov, 1998.
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Commission of the European Communities. Division Genetics and Biotechnology., ed. Molecular biology and crop improvement: A case study of wheat, oilseed rape, and faba beans. Cambridge [Cambridgeshire]: Cambridge University Press, 1986.
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Zhongguo Xizang you cai yi chuan zi yuan. Beijing: Ke xue chu ban she, 2009.
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Austin, R. B. Molecular biology and crop improvement: A case study of wheat, oilseed rape, and faba beans. Cambridge: Cambridge University Press, 2009.
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Sjödahl, Staffan. Studies on the structure, expression and gene regulation of cruciferin, the 12S storage globulin from Brassica napus (oilseed rape). Uppsala: Swedish University of Agricultural Sciences, Dept. of Cell Research, 1994.
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Rödin, Joakim. Studies on the structure and expression of cruciferin, the 12S storage globulin from Brassica napus (oilseed rape). Uppsala: Swedish University of Agricultural Sciences, Dept. of Cell Research, 1990.
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Boronnikova, S. V. Molekuli︠a︡rno-geneticheskai︠a︡ identifikat︠s︡ii︠a︡ i pasportizat︠s︡ii︠a︡ redkikh i nakhodi︠a︡shchikhsi︠a︡ pod ugrozoĭ ischeznovenii︠a︡ vidov rasteniĭ. Permʹ: Permskiĭ gos. universitet, 2009.
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Brunsfeld, Steven J. Preliminary genetic analysis of Cirsium longistylum (Long-styled thistle), a candidate threatened species. Helena, MT: Montana Natural Heritage Program, 1994.
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F, Smith James. The genetic diversity of the rare Idaho endemic Allium aaseae Ownbey (Alliaceae) and potential introgression with A. simillimum Henderson: Final report. Boise, Idaho: Bureau of Land Management, Idaho State Office, 1995.
Find full textBook chapters on the topic "Rape (Plant) – Genetics"
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Seiffert, B., W. Ecke, G. Lohaus, M. Wallbraun, Z. Zhou, and C. Möllers. "Strategies for the Investigation of N-Efficiency in Oilseed Rape." In Plant Nutrition — Molecular Biology and Genetics, 425–32. Dordrecht: Springer Netherlands, 1999. http://dx.doi.org/10.1007/978-94-017-2685-6_50.
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Kessel, Bettina, and Heiko C. Becker. "Genetic Variation of Nitrogen-Efficiency in Field Experiments with Oilseed Rape (Brassica Napus L.)." In Plant Nutrition — Molecular Biology and Genetics, 391–95. Dordrecht: Springer Netherlands, 1999. http://dx.doi.org/10.1007/978-94-017-2685-6_45.
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Tingey, Scott V., J. Antoni Rafalski, and Michael K. Hanafey. "Genetic Analysis with RAPD Markers." In Plant Molecular Biology, 491–500. Berlin, Heidelberg: Springer Berlin Heidelberg, 1994. http://dx.doi.org/10.1007/978-3-642-78852-9_45.
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Jain, S. K. "Genetics and demography of rare plants and patchily distributed colonizing species." In Conservation Genetics, 291–307. Basel: Birkhäuser Basel, 1994. http://dx.doi.org/10.1007/978-3-0348-8510-2_23.
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Yuai, Yang, Xue Jianming, Ye Zhengqiang, and Wang Ke. "Responses of Rape Genotypes to Boron Application." In Plant Nutrition — from Genetic Engineering to Field Practice, 421–24. Dordrecht: Springer Netherlands, 1993. http://dx.doi.org/10.1007/978-94-011-1880-4_87.
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Singh, Sarvjeet, S. R. Sharma, R. K. Gill, and Shiv Kumar. "Induced variation for post-emergence herbicide tolerance in lentil." In Mutation breeding, genetic diversity and crop adaptation to climate change, 220–25. Wallingford: CABI, 2021. http://dx.doi.org/10.1079/9781789249095.0022.
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Abstract Lentil (Lens culinaris L. Medik.) is an important cool-season food legume but is a poor competitor to weeds because of a slow early growth rate. If weeds are left uncontrolled, they can reduce yield by up to 50%. Sensitivity of lentil to post-emergence herbicides warrants development of herbicide-tolerant cultivars. In the absence of natural variability, mutation breeding is a powerful tool to create variability for desired traits. Thus, 1000 seeds of a lentil genotype, LL1203, were exposed to gamma radiation (300 Gy, 60Co) with the objective to induce herbicide tolerance. Seeds of all 530 surviving M1 plants were harvested individually and divided in two parts to raise the M2 generation in two different plots. Each plot was sprayed with imazethapyr (75 g/ha) and metribuzin (250 g/ha) herbicides 50 days after sowing, using water at 375 l/ha. Data on herbicide tolerance for individual M2 plants were recorded after 14 days of herbicide spray on a 1-5 scale, where 1 = highly tolerant (plants free from chlorosis or wilting) and 5 = highly sensitive (leaves and tender branches completely burnt). For herbicide-tolerant M2 plants, data were also recorded for pod and yield per plant. None of the M2 plants showed a high level of tolerance to imazethapyr. However, 14 mutants having higher herbicide tolerance to metribuzin were selected. Two mutants ('LL1203-MM10', 'LL1203-MM7') recorded < 2.0 score, while six mutants recorded < 2.50 score as compared with the 3.13 score of the parent variety. The pods per plant and seed yield per plant of mutants 'LL1203-MM7' (383 and 12.4 g) and 'LL1203-MM10' (347 and 12.1 g) were higher than those of the parent genotype LL1203 (253 and 7.8 g). The study indicated that metribuzin-tolerant mutants have some other desirable traits that can be of use in lentil breeding.
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Rabefiraisana, Harimialimalala Jhonny, Abdelbagi Mukhtar Ali Ghanim, Alice Andrianjaka, Berthe Rasoamampionona, Ljupcho Jankuloski, Mbolatiana Alinà Razafindrasoa, Ratsimiala Ramonta Isabelle, Ivan Ingelbrecht, Nirina Hanitriniaina Ravelonjanahary, and Noronirina Victorine Rakotoarisoa. "Impact of mulch-based cropping systems using green mulch and residues on the performance of advanced mutant lines of maize (Zea mays (L.)) under infested field with the parasitic weed Striga asiatica (L.) Kuntze in Madagascar." In Mutation breeding, genetic diversity and crop adaptation to climate change, 235–42. Wallingford: CABI, 2021. http://dx.doi.org/10.1079/9781789249095.0024.
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Abstract In Madagascar, cereal yields remain insufficient due to various biotic and abiotic constraints, including Striga asiatica, a parasitic weed that has contributed to decreased maize yield up to 100%. This work aims to assess the impact of the practice of two cropping systems on the maize crop infested by S. asiatica. PLATA maize seed of the putative tolerant mutant line from the M5 generation after gamma irradiation at 100, 200 and 300 Gy and of the sensitive parent variety were grown in fields naturally infested or artificially inoculated with one pinch of around 3000 ready-to-germinate seeds of S. asiatica. The cropping system (SCV) is a community of plants that is managed by a farm unit to achieve various human goals. The residue of Stylosanthes sp. legumes was used as mulch SCVm and the legume cowpea was planted with the host plant for the intercropping system SCVv. Results have shown that the use of mulch, either residue SCVm or green mulch SCVv, minimizes S. asiatica infestation on maize plants. The SCV reduces significantly the number of emerging Striga plants with an emergence of 1.33 ± 0.36 for SCVm, 4.33 ± 0.27 for SCVv and 15.00 ± 1.08 for the control. Moreover, M5 lines have shown significant differences in plant survival rate of 50.57 ± 1.25% to 80.00 ± 0.91%, versus 13.50 ± 0.47% for the parent variety. Yields of the parent and M5 lines on SCVm are, respectively, 3.46 ± 0.02 t/ha and 4.64 ± 0.01 t/ha, and 2.30 ± 0.04 t/ha and 3.61 ± 0.05 t/ha for SCVv, while that of the control plot remains low, varying from 0.50 ± 0.04 t/ha to 2.29 ± 0.01 t/ha. Cover increases soil humidity and delays the development of S. asiatica and infection of the host plant, thus improving host plant yield. These results demonstrate the benefit of the integrated approach of mutation breeding and cultural practice to ensure more durable crop production under heavy Striga infestation.
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Stahl, Andreas, and Rod Snowdon. "Genetic Improvement of Nitrogen Use Efficiency in Oilseed Rape." In Engineering Nitrogen Utilization in Crop Plants, 207–32. Cham: Springer International Publishing, 2018. http://dx.doi.org/10.1007/978-3-319-92958-3_12.
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Landau, Alejandra, Franco Lencina, María Elizabeth Petterson, María Gabriela Pacheco, Susana Costoya, Vanina Brizuela, and Alberto Prina. "The barley chloroplast mutator (cpm) mutant, an extraordinary source of plastome variability." In Mutation breeding, genetic diversity and crop adaptation to climate change, 271–79. Wallingford: CABI, 2021. http://dx.doi.org/10.1079/9781789249095.0027.
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Abstract The plastome is usually considered a highly conserved genome. Compared with the nuclear genome, it is small and has different genetic rules. Through different molecular methods (TILLING, candidate gene sequencing, amplicon massive sequencing and plastome re-sequencing) applied to barley chloroplast mutator (cpm) seedlings, we detected more than 60 polymorphisms affecting a wide variety of plastid genes and several intergenic regions. The genes affected belonged mostly to the plastid genetic machinery and the photosynthetic apparatus, but there were also genes like matK, whose functions are so far not clearly established. Among the isolated mutants, we found the first infA gene mutant in higher plants, two mutants in ycf3 locus and the first psbA gene mutant in barley. The latter is used in breeding barley cultivars where PSII is tolerant to toxic herbicides. Most of the molecular changes were substitutions, and small indels located in microsatellites. However, particular combinations of polymorphisms observed in the rpl23 gene and pseudogene suggest that, besides an increased rate of mutations, an augmented rate of illegitimate recombination also occurred. Although a few substitutions were observed in the mitochondria of cpm plants, we have not yet determined the implications of the cpm for mitochondrial stability. The spectrum of plastome polymorphisms highly suggests that the cpm gene is involved in plastid DNA repair, more precisely taking part in the mismatch repair system. All results show that the cpm mutant is an extraordinary source of plastome variability for plant research and/or plant breeding. This mutant also provides an interesting experimental system in which to investigate the mechanisms responsible for maintaining plastid stability.
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Geras'kin, Stanislav, Roman Churyukin, Polina Volkova, and Sofiya Bitarishvili. "Using ionizing radiation for improving the development and yield of agricultural crops." In Mutation breeding, genetic diversity and crop adaptation to climate change, 424–32. Wallingford: CABI, 2021. http://dx.doi.org/10.1079/9781789249095.0043.
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Abstract The response of barley seedlings was studied after gamma irradiation of seeds with doses in the range of 2-50 Gy. It was shown that stimulation of plant growth occurred in the dose range of 16-20 Gy. The influences of the dose rate, the quality of seeds and their moisture on the manifestation of radiation effects were investigated. We studied, under controlled conditions, the activities of metabolic and antioxidant enzymes and observed an increase in their activity in the range of doses that cause stimulation of seedling growth. We showed that changes in the balance among different classes of phytohormones were probably involved in the acceleration of plant growth after irradiation of seeds using stimulating doses. Gamma irradiation of barley seeds significantly influenced the development of plants during the growing season. After irradiation with stimulating doses, we observed a reduction in the duration of the initial stages of ontogenesis; the phase of full ripeness occurred 5-7 days earlier than in the controls. The manifestation of the effect of irradiation depended on the conditions in which the plants developed. During the growing season of 2014, which was a dry year, plants originating from the irradiated seeds showed an increase in the number of productive stems, which led to an increase in yield by 34-38%; during the optimal 2015 season, an increase in the number of grains per spike caused an increase in yield by 8-29%. Therefore, our field study has shown that at least some hormetic effects can occur in the field. Irradiation of seeds can increase field germination, stimulate the growth and development of plants and increase their resistance to unfavourable environmental conditions. A more complete understanding of the underlying mechanisms of hormesis is needed to exploit its potential benefits in crop production.
Conference papers on the topic "Rape (Plant) – Genetics"
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"Molecular analysis of sugar beet samples using the RAPD method." In Plant Genetics, Genomics, Bioinformatics, and Biotechnology. Novosibirsk ICG SB RAS 2021, 2021. http://dx.doi.org/10.18699/plantgen2021-001.
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"Genetic diversity of rare iris species in the Southern Urals." In Plant Genetics, Genomics, Bioinformatics, and Biotechnology. Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, 2019. http://dx.doi.org/10.18699/plantgen2019-113.
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"Race composition of the loose smut (Ustilago tritici) in Western Siberia." In Current Challenges in Plant Genetics, Genomics, Bioinformatics, and Biotechnology. Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences Novosibirsk State University, 2019. http://dx.doi.org/10.18699/icg-plantgen2019-23.
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"Rare species Iris scariosa and I. pumila in the Southern Urals." In Current Challenges in Plant Genetics, Genomics, Bioinformatics, and Biotechnology. Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences Novosibirsk State University, 2019. http://dx.doi.org/10.18699/icg-plantgen2019-50.
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"Studying the infection rate of seeds of various genotypes of sweet sorghum (Sorghum bicolor L.) by fungus and bacterial microflora." In Current Challenges in Plant Genetics, Genomics, Bioinformatics, and Biotechnology. Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences Novosibirsk State University, 2019. http://dx.doi.org/10.18699/icg-plantgen2019-25.
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Cutitaru, Doina. "Manifestarea productivităţii genotipurilor de in (Linum usitatissimum L.) cultivat în diferite epoci de semănat." In VIIth International Scientific Conference “Genetics, Physiology and Plant Breeding”. Institute of Genetics, Physiology and Plant Protection, Republic of Moldova, 2021. http://dx.doi.org/10.53040/gppb7.2021.57.
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Flax is a known but extremely rare crop for the Republic of Moldova. The potential level of agri-cultural production is generally considered to be determined by physical factors such as quality of the soil, quality and availability of water and the prevailing climate. Current studies cover at the international level the following directions: increase of productivity potential, increase of resistance to unfavorable bio-tic and abiotic factors, improvement of qualitative yield indices. The seed quality and seed production are known to be conditioned by the optimum planting date and the technological level used.
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Платовский, Николай. "Динамика накопления хлорофилла в листьях Triticum aestivum L. в зависимости от глубины залегания узла кущения." In VIIth International Scientific Conference “Genetics, Physiology and Plant Breeding”. Institute of Genetics, Physiology and Plant Protection, Republic of Moldova, 2021. http://dx.doi.org/10.53040/gppb7.2021.21.
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This research paper presents the results of the dynamics of the accumulation of the chlorophyll in-dex in winter soft wheat plants, depending on the depth of the tillering node. In conditions of lack of moisture, the deepening of the tillering node leads to the development of roots in more moisture-rich soil horizons, which reduces the risk of cultivating winter soft wheat. With the help of the chlorophyll index, it was possible to evaluate the effect of the deepening of the tillering node in the soil, as well as to assess the condition of plants and the rate of maturation.
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Михайлов, Михаил. "ЦИС-эффект гомозиготного генетического фона на частоту кроссинговера у кукурузы." In VIIth International Scientific Conference “Genetics, Physiology and Plant Breeding”. Institute of Genetics, Physiology and Plant Protection, Republic of Moldova, 2021. http://dx.doi.org/10.53040/gppb7.2021.18.
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The cys-effect of homozygous background on crossing over in maize. From the inbred maize lines MK01 and Ku123, the isogenic lines containing mutant markers lg1, gl2, c1, sh1, wx1 were obtained. They differ from original forms by pair of mutant markers. The hybrids of isogenic lines with the original forms are heterozygous only within marked region and are almost homozygous in the rest of the genome. Homozygous background leads to increase of mean recombination rate from 5.4% to 10.1% in c1-sh1, from 15.0% to 35.6% in s1-wx1 and from 18.2% to 32.8% in lg1-gl2.
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Будак, Александр. "Влияние пониженных температур на прорастание семян сои." In VIIth International Scientific Conference “Genetics, Physiology and Plant Breeding”. Institute of Genetics, Physiology and Plant Protection, Republic of Moldova, 2021. http://dx.doi.org/10.53040/gppb7.2021.30.
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The urgency of soybean breeding for increasing resistance to low temperatures is caused by a large share of the arid regions of Moldova, where the increase in productivity can be ensured by carrier earlier plant-ing and ripening periods before the summer droughts peaks. Thus, as a result of the studies carried out, it was found that when germinating seeds at a temperature of 4˚C, selection is stricter and more efficient. Sowing in the early stages is possible, since soybean seeds remain viable at low temperatures, and when the temperature rises, the best varieties reach the germination rate characteristic of optimal conditions.
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Chernetskaya, A. G., T. V. Yunkevich, and T. V. Kalenchuk. "ADDITIONAL METHODS FOR PRESERVING THE GENE POOL OF POPULATIONS OF RARE SPECIES OF MEDICINAL PLANTS." In SAKHAROV READINGS 2021: ENVIRONMENTAL PROBLEMS OF THE XXI CENTURY. International Sakharov Environmental Institute of Belarusian State University, 2021. http://dx.doi.org/10.46646/sakh-2021-2-371-374.
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To effectively conserve the gene pool of protected plants ex situ, a wide range of methods and approaches is used, each of which has its own advantages and disadvantages. To date, considerable experience has been gained in the preservation of plant genetic resources, which are important mainly for the agricultural sector, using different temperature regimes; gene banks have been created all over the world. Unfortunately, cryopreservation of seeds and various other plant material is successfully used mainly for agricultural crops, and experiments to preserve the gene pool of rare and endangered plant species are not so widespread. It is necessary to investigate the possibility of sustainable reproduction of the gene pool of certain rare and endangered species. The use of microclonal reproduction of protected plants is an additional way to preserve their gene pool and a prerequisite for the repаtriation of species that are disappearing in nature. The development of effective methods of microclonal reproduction is the basis of work on the creation of in vitro genetic banks of rare and endangered plant species, as well as one of the promising directions for the conservation of biodiversity in general.
Reports on the topic "Rape (Plant) – Genetics"
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Fluhr, Robert, and Volker Brendel. Harnessing the genetic diversity engendered by alternative gene splicing. United States Department of Agriculture, December 2005. http://dx.doi.org/10.32747/2005.7696517.bard.
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Our original objectives were to assess the unexplored dimension of alternative splicing as a source of genetic variation. In particular, we sought to initially establish an alternative splicing database for Arabidopsis, the only plant for which a near-complete genome has been assembled. Our goal was to then use the database, in part, to advance plant gene prediction programs that are currently a limiting factor in annotating genomic sequence data and thus will facilitate the exploitation of the ever increasing quantity of raw genomic data accumulating for plants. Additionally, the database was to be used to generate probes for establishing high-throughput alternative transcriptome analysis in the form of a splicing-specific oligonucleotide microarray. We achieved the first goal and established a database and web site termed Alternative Splicing In Plants (ASIP, http://www.plantgdb.org/ASIP/). We also thoroughly reviewed the extent of alternative splicing in plants (Arabidopsis and rice) and proposed mechanisms for transcript processing. We noted that the repertoire of plant alternative splicing differs from that encountered in animals. For example, intron retention turned out to be the major type. This surprising development was proven by direct RNA isolation techniques. We further analyzed EST databases available from many plants and developed a process to assess their alternative splicing rate. Our results show that the lager genome-sized plant species have enhanced rates of alternative splicing. We did advance gene prediction accuracy in plants by incorporating scoring for non-canonical introns. Our data and programs are now being used in the continuing annotation of plant genomes of agronomic importance, including corn, soybean, and tomato. Based on the gene annotation data developed in the early part of the project, it turned out that specific probes for different exons could not be scaled up to a large array because no uniform hybridization conditions could be found. Therefore, we modified our original objective to design and produce an oligonucleotide microarray for probing alternative splicing and realized that it may be reasonable to investigate the extent of alternative splicing using novel commercial whole genome arrays. This possibility was directly examined by establishing algorithms for the analysis of such arrays. The predictive value of the algorithms was then shown by isolation and verification of alternative splicing predictions from the published whole genome array databases. The BARD-funded work provides a significant advance in understanding the extent and possible roles of alternative splicing in plants as well as a foundation for advances in computational gene prediction.
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Christopher, David A., and Avihai Danon. Plant Adaptation to Light Stress: Genetic Regulatory Mechanisms. United States Department of Agriculture, May 2004. http://dx.doi.org/10.32747/2004.7586534.bard.
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Original Objectives: 1. Purify and biochemically characterize RB60 orthologs in higher plant chloroplasts; 2. Clone the gene(s) encoding plant RB60 orthologs and determine their structure and expression; 3. Manipulate the expression of RB60; 4. Assay the effects of altered RB60 expression on thylakoid biogenesis and photosynthetic function in plants exposed to different light conditions. In addition, we also examined the gene structure and expression of RB60 orthologs in the non-vascular plant, Physcomitrella patens and cloned the poly(A)-binding protein orthologue (43 kDa RB47-like protein). This protein is believed to a partner that interacts with RB60 to bind to the psbA5' UTR. Thus, to obtain a comprehensive view of RB60 function requires analysis of its biochemical partners such as RB43. Background & Achievements: High levels of sunlight reduce photosynthesis in plants by damaging the photo system II reaction center (PSII) subunits, such as D1 (encoded by the chloroplast tpsbAgene). When the rate of D1 synthesis is less than the rate of photo damage, photo inhibition occurs and plant growth is decreased. Plants use light-activated translation and enhanced psbAmRNA stability to maintain D1 synthesis and replace the photo damaged 01. Despite the importance to photosynthetic capacity, these mechanisms are poorly understood in plants. One intriguing model derived from the algal chloroplast system, Chlamydomonas, implicates the role of three proteins (RB60, RB47, RB38) that bind to the psbAmRNA 5' untranslated leader (5' UTR) in the light to activate translation or enhance mRNA stability. RB60 is the key enzyme, protein D1sulfide isomerase (Pill), that regulates the psbA-RN :Binding proteins (RB's) by way of light-mediated redox potentials generated by the photosystems. However, proteins with these functions have not been described from higher plants. We provided compelling evidence for the existence of RB60, RB47 and RB38 orthologs in the vascular plant, Arabidopsis. Using gel mobility shift, Rnase protection and UV-crosslinking assays, we have shown that a dithiol redox mechanism which resembles a Pill (RB60) activity regulates the interaction of 43- and 30-kDa proteins with a thermolabile stem-loop in the 5' UTR of the psbAmRNA from Arabidopsis. We discovered, in Arabidopsis, the PD1 gene family consists of II members that differ in polypeptide length from 361 to 566 amino acids, presence of signal peptides, KDEL motifs, and the number and positions of thioredoxin domains. PD1's catalyze the reversible formation an disomerization of disulfide bonds necessary for the proper folding, assembly, activity, and secretion of numerous enzymes and structural proteins. PD1's have also evolved novel cellular redox functions, as single enzymes and as subunits of protein complexes in organelles. We provide evidence that at least one Pill is localized to the chloroplast. We have used PDI-specific polyclonal and monoclonal antisera to characterize the PD1 (55 kDa) in the chloroplast that is unevenly distributed between the stroma and pellet (containing membranes, DNA, polysomes, starch), being three-fold more abundant in the pellet phase. PD1-55 levels increase with light intensity and it assembles into a high molecular weight complex of ~230 kDa as determined on native blue gels. In vitro translation of all 11 different Pill's followed by microsomal membrane processing reactions were used to differentiate among PD1's localized in the endoplasmic reticulum or other organelles. These results will provide.1e insights into redox regulatory mechanisms involved in adaptation of the photosynthetic apparatus to light stress. Elucidating the genetic mechanisms and factors regulating chloroplast photosynthetic genes is important for developing strategies to improve photosynthetic efficiency, crop productivity and adaptation to high light environments.
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Freeman, Stanley, and Daniel Legard. Epidemiology and Etiology of Colletotrichum Species Causing Strawberry Diseases. United States Department of Agriculture, September 2001. http://dx.doi.org/10.32747/2001.7695845.bard.
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Diseases caused by Colletotrichum spp. are one of the most important limitations on international strawberry production, affecting all vegetative and fruiting parts of the plant. From 1995 to 1997, C. acutatum infections reached epidemic levels in Israeli strawberry nurseries, causing extensive loss of transplants in fruit-bearing fields and additional reductions in yield. Although C. acutatum also occurs on strawberry in Florida, recent crown rot epidemics have been primarily caused by C. gloeosporioides. Little is known about the basic epidemiology of these important diseases on strawberry. The source of initial inoculum for epidemics in Israel, Florida (other US states including California) and the rest of the world is not well understood. Subspecies relationships between Colletotrichum isolates that cause the different diseases on strawberry (i.e. attack different tissues) are also not well understood. Objectives of this proposal were to detennine the potential of infested soil, strawberry debris and other hosts as sources of primary inoculum for strawberry diseases caused by Colletotrichum spp. in Israel and Florida. In addition, traditional (ie. morphological characteristics, benomyl sensitivity, vegetative compatibility grouping) and DNA based methods were used to investigate the etiology of these diseases in order to resolve epidemiologically important subspecies variation. In Israel it was found that C. gloeosporioides and C. acutatum infecting strawberry could remain viable in sterilized soil for up to one year and in methyl-bromide fumigated soil for up to 4 months; inoculum in mummified fruit remained viable for at least 5 months under field conditions whereas that in infected crowns was not recovered. Therefore, the contribution of these inocula to disease epidemics should be considered. The host range and specificity of C. acutatum from strawberry was examined on pepper, eggplant, tomato, bean and strawberry under greenhouse conditions. The fungus was recovered from all plant species over a three-month period but caused disease symptoms only on strawberry. C. acutatum was also isolated from healthy looking, asymptomatic plants of the weed species, Vicia and Conyza, growing in infected strawberry fruiting fields. Isolates of C. acutatum originating from strawberry and anemone infected both plant species in artificial inoculations. The habitation of a large number of plant species including weeds by C. acutatum suggests that although it causes disease only on strawberry and anemone in Israel, these plants may serve as a potential inoculum source for strawberry infection and pennit survival of the pathogen between seasons. In Florida, isolates of Colletotrichum spp. from diseased strawberry fruit and crowns were evaluated to detennine their etiology and the genetic diversity of the pathogens. Only C. acutatum was recovered from fruit and C. gloeosporioides were the main species recovered from crowns. These isolates were evaluated at 40 putative genetic loci using random amplified polymorphic DNA (RAPD). Genetic analysis of RAPD markers revealed that the level of linkage disequilibrium among polymorphic loci in C. gloeosporioides suggested that they were a sexually reproducing population. Under field conditions in Florida, it was detennined that C. gloeosporioides in buried crowns survived
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Sherman, Amir, Rebecca Grumet, Ron Ophir, Nurit Katzir, and Yiqun Weng. Whole genome approach for genetic analysis in cucumber: Fruit size as a test case. United States Department of Agriculture, December 2013. http://dx.doi.org/10.32747/2013.7594399.bard.
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The Cucurbitaceae family includes a broad array of economically and nutritionally important crop species that are consumed as vegetables, staple starches and desserts. Fruit of these species, and types within species, exhibit extensive diversity as evidenced by variation in size, shape, color, flavor, and others. Fruit size and shape are critical quality determinants that delineate uses and market classes and are key traits under selection in breeding programs. However, the underlying genetic bases for variation in fruit size remain to be determined. A few species the Cucurbitaceae family were sequenced during the time of this project (cucumber was already sequenced when the project started watermelon and melon sequence became available during the project) but functional genomic tools are still missing. This research program had three major goals: 1. Develop whole genome cucumber and melon SNP arrays. 2. Develop and characterize cucumber populations segregating for fruit size. 3. Combine genomic tools, segregating populations, and phenotypic characterization to identify loci associated with fruit size. As suggested by the reviewers the work concentrated mostly in cucumber and not both in cucumber and melon. In order to develop a SNP (single nucleotide polymorphism) array for cucumber, available and newly generated sequence from two cucumber cultivars with extreme differences in shape and size, pickling GY14 and Chinese long 9930, were analyzed for variation (SNPs). A large set of high quality SNPs was discovered between the two parents of the RILs population (GY14 and 9930) and used to design a custom SNP array with 35000 SNPs using Agilent technology. The array was validated using 9930, Gy14 and F1 progeny of the two parents. Several mapping populations were developed for linkage mapping of quantitative trait loci (QTL) for fruit size These includes 145 F3 families and 150 recombinant inbred line (RILs F7 or F8 (Gy14 X 9930) and third population contained 450 F2 plants from a cross between Gy14 and a wild plant from India. The main population that was used in this study is the RILs population of Gy14 X 9930. Phenotypic and morphological analyses of 9930, Gy14, and their segregating F2 and RIL progeny indicated that several, likely independent, factors influence cucumber fruit size and shape, including factors that act both pre-anthesis and post-pollination. These include: amount, rate, duration, and plane of cell division pre- and post-anthesis and orientation of cell expansion. Analysis of F2 and RIL progeny indicated that factors influencing fruit length were largely determined pre-anthesis, while fruit diameter was more strongly influenced by environment and growth factors post-anthesis. These results suggest involvement of multiple genetically segregating factors expected to map independently onto the cucumber genome. Using the SNP array and the phenotypic data two major QTLs for fruit size of cucumber were mapped in very high accuracy (around 300 Kb) with large set of markers that should facilitate identification and cloning of major genes that contribute to fruit size in cucumber. In addition, a highly accurate haplotype map of all RILS was created to allow fine mapping of other traits segregating in this population. A detailed cucumber genetic map with 6000 markers was also established (currently the most detailed genetic map of cucumber). The integration of genetics physiology and genomic approaches in this project yielded new major infrastructure tools that can be used for understanding fruit size and many other traits of importance in cucumber. The SNP array and genetic population with an ultra-fine map can be used for future breeding efforts, high resolution mapping and cloning of traits of interest that segregate in this population. The genetic map that was developed can be used for other breeding efforts in other populations. The study of fruit development that was done during this project will be important in dissecting function of genes that that contribute to the fruit size QTLs. The SNP array can be used as tool for mapping different traits in cucumber. The development of the tools and knowledge will thus promote genetic improvement of cucumber and related cucurbits.
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Katzir, Nurit, Rafael Perl-Treves, and Jack E. Staub. Map Merging and Homology Studies in Cucumis Species. United States Department of Agriculture, September 2000. http://dx.doi.org/10.32747/2000.7575276.bard.
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List of original objectives (1) Construct a saturated map of melon, using RFLP, SSR, RAPD and Inter-SSR genetic markers. (2) Study the homology between the genomes of cucumber and melon. (3) Add to the Cucumis map, biologically important genes that had been cloned in other plant systems. Background Cucumber and melon are important vegetable crops in Israel and the US. Genome analysis of these crops has lagged behind the major plant crops, but in the last few years genetic maps with molecular markers have been developed. The groups that participated in this program were all involved in initial mapping of cucurbit crops. This grant was meant to contribute to this trend and promote some of the more advanced applications of genome analysis, i.e., map saturation and comparative mapping between cucurbit species. Major achievements The main achievements of the research were (a) the construction of melon maps that include important horticultural traits and Resistance Gene Homologues, (b) the development of approximately 200 SSR markers of melon and cucumber, (c) the preliminary map merging of melon maps and of comparative mapping between melon and cucumber. Implications As a result of this program, we have a good estimate of the applicability of different types or markers developed in one cucurbit species to genetic mapping in other species. Since the linkage groups of melon and cucumber can now be related to each other, future identification of important genes in the two crops will be facilitated. Moreover, the further saturation of the maps with additional markers will now allow us to target several disease resistance loci, horticultural traits for marker-assisted selection, fine mapping and positional cloning.
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Amzeri, Achmad, Kaswan Badami, and Gita Pawana. Inheritance of resistance to downy mildew (Peronosclerospora maydis) in crossing of Madura Maize Plant (Zea mays L.). Innovative Scientific Information & Services Network, May 2019. http://dx.doi.org/10.21107/amzeri.2019.1.
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Hybridization of Back cross is one method to get varieties that are resistant to downy mildew. The purpose of this study was to obtain information on inheritance characteristics of downy mildew resistance. This research was conducted at the experiment center of Agro-Technology Study Program of Agriculture Faculty, University of Trunojoyo Madura. Research of Assessment of resistance to Downy Mildew used a randomized block design with 18 treatments (P1, P2, F1, F2, BC1P1 and BC1P2 in three sets of crosses, namely LGL x Mdr-3, T12 x Mdr-1 and E02 x Mdr-2) and three replications so there were 54 experimental units. Identification of polymorphic RAPD markers for endurance to downy mildew through Bulk Segregant Analysis (BSA) was done by amplifying the DNA in the resistant pool and susceptible pool. The random primers used were 120 primers from 6 operon groups, namely OPA, OPB, OPC, OPD, OPF and OPG. The results showed that the inheritance pattern of maize genetic resistance to downy mildew followed a segregation pattern of 3:1 with a degree of dominance between -1 and 0, and was controlled by incomplete partially negative dominant gene. OPC-07 was a marker that was linkage close to the resistance to downy mildew with a genetic distance of 1.9 cM.
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Granot, David, Richard Amasino, and Avner Silber. Mutual effects of hexose phosphorylation enzymes and phosphorous on plant development. United States Department of Agriculture, January 2006. http://dx.doi.org/10.32747/2006.7587223.bard.
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Research objectives 1) Analyze the combined effects of hexose phosphorylation and P level in tomato and Arabidopsis plants 2) Analyze the combined effects of hexose phosphorylation and P level in pho1 and pho2 Arabidopsis mutants 3) Clone and analyze the PHO2 gene 4) Select Arabidopsis mutants resistant to high and low P 5) Analyze the Arabidopsis mutants and clone the corresponding genes 6) Survey wild tomato species for growth characteristics at various P levels Background to the topic Hexose phosphorylating enzymes, the first enzymes of sugar metabolism, regulate key processes in plants such as photosynthesis, growth, senescence and vascular transport. We have previously discovered that hexose phosphorylating enzymes might regulate these processes as a function of phosphorous (P) concentration, and might accelerate acquisition of P, one of the most limiting nutrients in the soil. These discoveries have opened new avenues to gain fundamental knowledge about the relationship between P, sugar phosphorylation and plant development. Since both hexose phosphorylating enzymes and P levels affect plant development, their interaction is of major importance for agriculture. Due to the acceleration of senescence caused by the combined effects of hexose phosphorylation and P concentration, traits affecting P uptake may have been lost in the course of cultivation in which fertilization with relatively high P (30 mg/L) are commonly used. We therefore intended to survey wild tomato species for high P-acquisition at low P soil levels. Genetic resources with high P-acquisition will serve not only to generate a segregating population to map the trait and clone the gene, but will also provide a means to follow the trait in classical breeding programs. This approach could potentially be applicable for other crops as well. Major conclusions, solutions, achievements Our results confirm the mutual effect of hexose phosphorylating enzymes and P level on plant development. Two major aspects of this mutual effect arose. One is related to P toxicity in which HXK seems to play a major role, and the second is related to the effect of HXK on P concentration in the plant. Using tomato plants we demonstrated that high HXK activity increased leaf P concentration, and induced P toxicity when leaf P concentration increases above a certain high level. These results further support our prediction that the desired trait of high-P acquisition might have been lost in the course of cultivation and might exist in wild species. Indeed, in a survey of wild species we identified tomato species that acquired P and performed better at low P (in the irrigation water) compared to the cultivated Lycopersicon esculentum species. The connection between hexose phosphorylation and P toxicity has also been shown with the P sensitive species VerticordiaplumosaL . in which P toxicity is manifested by accelerated senescence (Silber et al., 2003). In a previous work we uncovered the phenomenon of sugar induced cell death (SICD) in yeast cells. Subsequently we showed that SICD is dependent on the rate of hexose phosphorylation as determined by Arabidopsis thaliana hexokinase. In this study we have shown that hexokinase dependent SICD has many characteristics of programmed cell death (PCD) (Granot et al., 2003). High hexokinase activity accelerates senescence (a PCD process) of tomato plants, which is further enhanced by high P. Hence, hexokinase mediated PCD might be a general phenomena. Botrytis cinerea is a non-specific, necrotrophic pathogen that attacks many plant species, including tomato. Senescing leaves are particularly susceptible to B. cinerea infection and delaying leaf senescence might reduce this susceptibility. It has been suggested that B. cinerea’s mode of action may be based on induction of precocious senescence. Using tomato plants developed in the course of the preceding BARD grant (IS 2894-97) and characterized throughout this research (Swartzberg et al., 2006), we have shown that B. cinerea indeed induces senescence and is inhibited by autoregulated production of cytokinin (Swartzberg et al., submitted). To further determine how hexokinase mediates sugar effects we have analyzed tomato plants that express Arabidopsis HXK1 (AtHXK1) grown at different P levels in the irrigation water. We found that Arabidopsis hexokinase mediates sugar signalling in tomato plants independently of hexose phosphate (Kandel-Kfir et al., submitted). To study which hexokinase is involved in sugar sensing we searched and identified two additional HXK genes in tomato plants (Kandel-Kfir et al., 2006). Tomato plants have two different hexose phosphorylating enzymes; hexokinases (HXKs) that can phosphorylate either glucose or fructose, and fructokinases (FRKs) that specifically phosphorylate fructose. To complete the search for genes encoding hexose phosphorylating enzymes we identified a forth fructokinase gene (FRK) (German et al., 2004). The intracellular localization of the four tomato HXK and four FRK enzymes has been determined using GFP fusion analysis in tobacco protoplasts (Kandel-Kfir et al., 2006; Hilla-Weissler et al., 2006). One of the HXK isozymes and one of the FRK isozymes are located within plastids. The other three HXK isozymes are associated with the mitochondria while the other three FRK isozymes are dispersed in the cytosol. We concluded that HXK and FRK are spatially separated in plant cytoplasm and accordingly might play different metabolic and perhaps signalling roles. We have started to analyze the role of the various HXK and FRK genes in plant development. So far we found that LeFRK2 is required for xylem development (German et al., 2003). Irrigation with different P levels had no effect on the phenotype of LeFRK2 antisense plants. In the course of this research we developed a rapid method for the analysis of zygosity in transgenic plants (German et al., 2003).
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Paterson, Andrew H., Yehoshua Saranga, and Dan Yakir. Improving Productivity of Cotton (Gossypsum spp.) in Arid Region Agriculture: An Integrated Physiological/Genetic Approach. United States Department of Agriculture, December 1999. http://dx.doi.org/10.32747/1999.7573066.bard.
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Objectives: We seek to establish the basis for improving cotton productivity under arid conditions, by studying the water use efficiency - evaporative cooling interrelationship. Specifically, we will test the hypothesis that cotton productivity under arid conditions can be improved by combining high seasonal WUE with efficient evaporative cooling, evaluate whether high WUE and/or evaporative cooling are based on specific physiological factors such as diurnal flexibility in stomatal conductance, stomatal density, photosynthetic capacity, chlorophyll fluorescence, and plant water status. Genes influencing both WUE and evaporative cooling, as well as other parameters such as economic products (lint yield, quality, harvest index) of cotton will also be mapped, in order to evaluate influences of water relations on these parameters. Approach: Carbon isotope ratio will be used to evaluate WUE, accompanied by additional parameters to elucidate the relationship between WUE, evaporative cooling, and cotton productivity. A detailed RFLP map will be used to determine the number, location, and phenotypic effects of genes underlying genetic variation in WUE between cultivated cottons, as well as test associations of these genes with traits of economic importance such as harvest index, lint yield, and lint quality. Major Conclusions: Productivity and quality of cotton grown under well-watered versus water-limited conditions was shown to be partly accounted for by different quantitative trait loci (QTLs). Among a suite of physiological traits often found to differ between genotypes adapted to arid versus well-watered conditions, genetic mapping implicated only reduced plant osmotic potential in improved cotton productivity under arid conditions. Our findings clearly implicate OP as a major component of cotton adaptation to arid conditions. However, testing of further physiological hypotheses is clearly needed to account for additional QTL alleles conferring higher seed-cotton yield under arid conditions, such as three of the five we found. Near-isogenic lines being made for QTLs discovered herein will offer a powerful new tool useful toward identification of the underlying gene(s) by using fine-scale mapping approaches (Paterson et al 1990). Implications: Adaptation to both arid and favorable conditions can be combined into the same genotype. We have identified diagnostic DNA markers that are being applied to creation of such desirable genotypes. Simultaneous improvement of productivity (and/or quality) for both arid and irrigated conditions will require more extensive field testing and the manipulation of larger numbers of genes, reducing the expected rate of genetic gain These difficulties may be at least partly ameliorated by efficiencies gained through identification and use of diagnostic DNA markers. Genomic tools and approaches may expedite adaptation of crops to arid cultivation, help to test roles of additional physiological factors, and guide the isolation of the underlying genes that protect crop performance under arid conditions.
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Li, Li, Joseph Burger, Nurit Katzir, Yaakov Tadmor, Ari Schaffer, and Zhangjun Fei. Characterization of the Or regulatory network in melon for carotenoid biofortification in food crops. United States Department of Agriculture, April 2015. http://dx.doi.org/10.32747/2015.7594408.bard.
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The general goals of the BARD research grant US-4423-11 are to understand how Or regulates carotenoid accumulation and to reveal novel strategies for breeding agricultural crops with enhanced β-carotene level. The original objectives are: 1) to identify the genes and proteins in the Or regulatory network in melon; 2) to genetically and molecularly characterize the candidate genes; and 3) to define genetic and functional allelic variation of these genes in a representative germplasm collection of the C. melo species. Or was found by the US group to causes provitamin A accumulation in chromoplasts in cauliflower. Preliminary genetic study from the Israeli group revealed that the melon Or gene (CmOr) completely co-segregated with fruit flesh color in a segregating mapping population and in a wide melon germplasm collection, which set the stage for the funded research. Major conclusions and achievements include: 1). CmOris proved to be the gene that controls melon fruit flesh color and represents the previously described gflocus in melon. 2). Genetic and molecular analyses of CmOridentify and confirm a single SNP that is responsible for the orange and non-orange phenotypes in melon fruit. 3). Alteration of the evolutionarily conserved arginine in an OR protein to both histidine or alanine greatly enhances its ability to promote carotenoid accumulation. 4). OR promotes massive carotenoid accumulation due to its dual functions in regulating both chromoplast biogenesis and carotenoid biosynthesis. 5). A bulk segregant transcriptome (BSRseq) analysis identifies a list of genes associated with the CmOrregulatory network. 6). BSRseq is proved to be an effective approach for gene discovery. 7). Screening of an EMS mutation library identifies a low β mutant, which contains low level of carotenoids due to a mutation in CmOrto produce a truncated form of OR protein. 8). low β exhibits lower germination rate and slow growth under salt stress condition. 9). Postharvest storage of fruit enhances carotenoid accumulation, which is associated with chromoplast development. Our research uncovers the molecular mechanisms underlying the Or-regulated high level of carotenoid accumulation via regulating carotenoidbiosynthetic capacity and storage sink strength. The findings provide mechanistic insights into how carotenoid accumulation is controlled in plants. Our research also provides general and reliable molecular markers for melon-breeding programs to select orange varieties, and offers effective genetic tools for pro-vitamin A enrichment in other important crops via the rapidly developed genome editing technology. The newly discovered low β mutant could lead to a better understanding of the Or gene function and its association with stress response, which may explain the high conservation of the Or gene among various plant species.
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Dubcovsky, Jorge, Tzion Fahima, and Ann Blechl. Molecular characterization and deployment of the high-temperature adult plant stripe rust resistance gene Yr36 from wheat. United States Department of Agriculture, November 2013. http://dx.doi.org/10.32747/2013.7699860.bard.
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Stripe rust, caused by Puccinia striiformis f. sp. tritici is one of the most destructive fungal diseases of wheat. Virulent races that appeared within the last decade caused drastic cuts in yields. The incorporation of genetic resistance against this pathogen is the most cost-effective and environmentally friendly solution to this problem. However, race specific seedling resistance genes provide only a temporary solution because fungal populations rapidly evolve to overcome this type of resistance. In contrast, high temperature adult plant (HTAP) resistance genes provide a broad spectrum resistance that is partial and more durable. The cloning of the first wheat HTAP stripe rust resistance gene Yr36 (Science 2009, 323:1357), funded by our previous (2007-2010) BARD grant, provided us for the first time with an entry point for understanding the mechanism of broad spectrum resistance. Two paralogous copies of this gene are tightly linked at the Yr36 locus (WKS1 and WKS2). The main objectives of the current study were to characterize the Yr36 (WKS) resistance mechanism and to identify and characterize alternative WKSgenes in wheat and wild relatives. We report here that the protein coded by Yr36, designated WKS1, that has a novel architecture with a functional kinase and a lipid binding START domain, is localized to chloroplast. Our results suggest that the presence of the START domain may affect the kinase activity. We have found that the WKS1 was over-expressed on leaf necrosis in wheat transgenic plants. When the isolated WKS1.1 splice variant transcript was transformed into susceptible wheat it conferred resistance to stripe rust, but the truncated variant WKS1.2 did not confer resistance. WKS1.1 and WKS1.2 showed different lipid binding profiling. WKS1.1 enters the chloroplast membrane, while WKS1.2 is only attached outside of the chloroplast membrane. The ascorbate peroxidase (APX) activity of the recombinant protein of TmtAPXwas found to be reduced by WKS1.1 protein in vitro. The WKS1.1 mature protein in the chloroplast is able to phosphorylate TmtAPXprotein in vivo. WKS1.1 induced cell death by suppressing APX activity and reducing the ability of the cell to detoxify reactive oxygen. The decrease of APX activity reduces the ability of the plant to detoxify the reactive H2O2 and is the possible mechanism underlying the accelerated cell death observed in the transgenic plants overexpressing WKS1.1 and in the regions surrounding a stripe rust infection in the wheat plants carrying the natural WKS1.1 gene. WKS2 is a nonfunctional paralog of WKS1 in wild emmer wheat, probably due to a retrotransposon insertion close to the alternative splicing site. In some other wild relatives of wheat, such as Aegilops comosa, there is only one copy of this gene, highly similar to WKS2, which is lucking the retrotransposon insertion. WKS2 gene present in wheat and WKS2-Ae from A. showed a different pattern of alternative splice variants, regardless of the presence of the retrotransposon insertion. Susceptible Bobwhite transformed with WKS2-Ae (without retrotansposon insertion in intron10), which derived from Aegilops comosaconferred resistance to stripe rust in wheat. The expression of WKS2-Ae in transgenic plants is up-regulated by temperature and pathogen infection. Combination of WKS1 and WKS2-Ae shows improved stripe rust resistance in WKS1×WKS2-Ae F1 hybrid plants. The obtained results show that WKS1 protein is accelerating programmed cell death observed in the regions surrounding a stripe rust infection in the wheat plants carrying the natural or transgenic WKS1 gene. Furthermore, characterization of the epistatic interactions of Yr36 and Yr18 demonstrated that these two genes have additive effects and can therefore be combined to increase partial resistance to this devastating pathogen of wheat. These achievements may have a broad impact on wheat breeding efforts attempting to protect wheat yields against one of the most devastating wheat pathogen.