Journal articles on the topic 'Proteins crowding'
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Zhou, Huan-Xiang. "Crowding Effects of Membrane Proteins." Journal of Physical Chemistry B 113, no. 23 (June 11, 2009): 7995–8005. http://dx.doi.org/10.1021/jp8107446.
Full textRhoades, Elizabeth. "Proteins: Disorder, Folding, and Crowding." Biophysical Journal 117, no. 1 (July 2019): 3–4. http://dx.doi.org/10.1016/j.bpj.2019.06.014.
Full textSnead, Wilton T., Carl C. Hayden, Avinash K. Gadok, Chi Zhao, Eileen M. Lafer, Padmini Rangamani, and Jeanne C. Stachowiak. "Membrane fission by protein crowding." Proceedings of the National Academy of Sciences 114, no. 16 (April 3, 2017): E3258—E3267. http://dx.doi.org/10.1073/pnas.1616199114.
Full textZosel, Franziska, Andrea Soranno, Karin J. Buholzer, Daniel Nettels, and Benjamin Schuler. "Depletion interactions modulate the binding between disordered proteins in crowded environments." Proceedings of the National Academy of Sciences 117, no. 24 (June 2, 2020): 13480–89. http://dx.doi.org/10.1073/pnas.1921617117.
Full textWei, Jiachen, and Fan Song. "Association equilibria for proteins interacted with crowders of short-range attraction in crowded environment." International Journal of Modern Physics B 31, no. 03 (January 23, 2017): 1750007. http://dx.doi.org/10.1142/s0217979217500072.
Full textHorton, Margaret R., Felix Höfling, Joachim O. Rädler, and Thomas Franosch. "Development of anomalous diffusion among crowding proteins." Soft Matter 6, no. 12 (2010): 2648. http://dx.doi.org/10.1039/b924149c.
Full textBanks, Daniel S., and Cécile Fradin. "Anomalous Diffusion of Proteins Due to Molecular Crowding." Biophysical Journal 89, no. 5 (November 2005): 2960–71. http://dx.doi.org/10.1529/biophysj.104.051078.
Full textMakowski, Lee, Diane J. Rodi, Suneeta Mandava, David D. L. Minh, David B. Gore, and Robert F. Fischetti. "Molecular Crowding Inhibits Intramolecular Breathing Motions in Proteins." Journal of Molecular Biology 375, no. 2 (January 2008): 529–46. http://dx.doi.org/10.1016/j.jmb.2007.07.075.
Full textCandotti, Michela, and Modesto Orozco. "The Differential Response of Proteins to Macromolecular Crowding." PLOS Computational Biology 12, no. 7 (July 29, 2016): e1005040. http://dx.doi.org/10.1371/journal.pcbi.1005040.
Full textPerham, Michael, Loren Stagg, and Pernilla Wittung-Stafshede. "Macromolecular crowding increases structural content of folded proteins." FEBS Letters 581, no. 26 (October 1, 2007): 5065–69. http://dx.doi.org/10.1016/j.febslet.2007.09.049.
Full textDias, Rita S. "Role of Protein Self-Association on DNA Condensation and Nucleoid Stability in a Bacterial Cell Model." Polymers 11, no. 7 (June 29, 2019): 1102. http://dx.doi.org/10.3390/polym11071102.
Full textScott, Shane, Cynthia Shaheen, Brendon McGuinness, Kimberly Metera, Fedor Kouzine, David Levens, Craig J. Benham, and Sabrina Leslie. "Single-molecule visualization of the effects of ionic strength and crowding on structure-mediated interactions in supercoiled DNA molecules." Nucleic Acids Research 47, no. 12 (May 20, 2019): 6360–68. http://dx.doi.org/10.1093/nar/gkz408.
Full textChebotareva, Natalia A., Svetlana G. Roman, Vera A. Borzova, Tatiana B. Eronina, Valeriya V. Mikhaylova, and Boris I. Kurganov. "Chaperone-Like Activity of HSPB5: The Effects of Quaternary Structure Dynamics and Crowding." International Journal of Molecular Sciences 21, no. 14 (July 13, 2020): 4940. http://dx.doi.org/10.3390/ijms21144940.
Full textBorzova, Vera A., Svetlana G. Roman, Anastasiya V. Pivovarova, and Natalia A. Chebotareva. "Effects of Molecular Crowding and Betaine on HSPB5 Interactions, with Target Proteins Differing in the Quaternary Structure and Aggregation Mechanism." International Journal of Molecular Sciences 23, no. 23 (December 6, 2022): 15392. http://dx.doi.org/10.3390/ijms232315392.
Full textDemosthene, Bryan, Myeongsang Lee, Ryan R. Marracino, James B. Heidings, and Ellen Hyeran Kang. "Molecular Basis for Actin Polymerization Kinetics Modulated by Solution Crowding." Biomolecules 13, no. 5 (May 2, 2023): 786. http://dx.doi.org/10.3390/biom13050786.
Full textKim, Youngchan, and Jeetain Mittal. "Crowding Induced Coil-Globule Transitions of Intrinsically Disordered Proteins." Biophysical Journal 112, no. 3 (February 2017): 511a. http://dx.doi.org/10.1016/j.bpj.2016.11.2764.
Full textQu, Youxing, and D. W. Bolen. "Efficacy of macromolecular crowding in forcing proteins to fold." Biophysical Chemistry 101-102 (December 2002): 155–65. http://dx.doi.org/10.1016/s0301-4622(02)00148-5.
Full textGorensek-Benitez, Annelise H., Bryan Kirk, and Jeffrey K. Myers. "Protein Fibrillation under Crowded Conditions." Biomolecules 12, no. 7 (July 6, 2022): 950. http://dx.doi.org/10.3390/biom12070950.
Full textAndré, Alain A. M., and Evan Spruijt. "Liquid–Liquid Phase Separation in Crowded Environments." International Journal of Molecular Sciences 21, no. 16 (August 17, 2020): 5908. http://dx.doi.org/10.3390/ijms21165908.
Full textSnead, Wilton T., Wade F. Zeno, Grace Kago, Ryan W. Perkins, J. Blair Richter, Chi Zhao, Eileen M. Lafer, and Jeanne C. Stachowiak. "BAR scaffolds drive membrane fission by crowding disordered domains." Journal of Cell Biology 218, no. 2 (November 30, 2018): 664–82. http://dx.doi.org/10.1083/jcb.201807119.
Full textAl-Ayoubi, S. R., P. H. Schummel, M. Golub, J. Peters, and R. Winter. "Influence of cosolvents, self-crowding, temperature and pressure on the sub-nanosecond dynamics and folding stability of lysozyme." Physical Chemistry Chemical Physics 19, no. 22 (2017): 14230–37. http://dx.doi.org/10.1039/c7cp00705a.
Full textRoss, Murial L., Jeffrey Kunkel, Steven Long, and Prashanth Asuri. "Combined Effects of Confinement and Macromolecular Crowding on Protein Stability." International Journal of Molecular Sciences 21, no. 22 (November 12, 2020): 8516. http://dx.doi.org/10.3390/ijms21228516.
Full textTokuriki, N., T. Yomo, Y. Katakura, K. Ogasawara, K. Yutani, and I. Urabe. "Crowding effect of proteins with random sequence in polyethylene glycol." Seibutsu Butsuri 40, supplement (2000): S172. http://dx.doi.org/10.2142/biophys.40.s172_2.
Full textLi, Chao, Xiangxiang Zhang, Mingdong Dong, and Xiaojun Han. "Progress on Crowding Effect in Cell-like Structures." Membranes 12, no. 6 (June 3, 2022): 593. http://dx.doi.org/10.3390/membranes12060593.
Full textMondal, Somnath, Ravula Thirupathi, and Hanudatta S. Atreya. "Carbon quantum dots as a macromolecular crowder." RSC Advances 5, no. 6 (2015): 4489–92. http://dx.doi.org/10.1039/c4ra14019b.
Full textTAKAGI, Fumiko, and Syoji TAKADA. "Structure formation of proteins and "Molecular crowding" : Molecular dynamics simulation." Seibutsu Butsuri 41, supplement (2001): S175. http://dx.doi.org/10.2142/biophys.41.s175_4.
Full textWojciechowski, M., and Marek Cieplak. "Effects of confinement and crowding on folding of model proteins." Biosystems 94, no. 3 (December 2008): 248–52. http://dx.doi.org/10.1016/j.biosystems.2008.06.016.
Full textSulmann, Stefan, Daniele Dell'Orco, Valerio Marino, Petra Behnen, and Karl-Wilhelm Koch. "Conformational Changes in Calcium-Sensor Proteins under Molecular Crowding Conditions." Chemistry - A European Journal 20, no. 22 (March 27, 2014): 6756–62. http://dx.doi.org/10.1002/chem.201402146.
Full textDey, Pinki, and Arnab Bhattacherjee. "Disparity in anomalous diffusion of proteins searching for their target DNA sites in a crowded medium is controlled by the size, shape and mobility of macromolecular crowders." Soft Matter 15, no. 9 (2019): 1960–69. http://dx.doi.org/10.1039/c8sm01933a.
Full textBESSA RAMOS, ESIO, KATHELIJNE WINTRAECKEN, ANS GEERLING, and RENKO DE VRIES. "SYNERGY OF DNA-BENDING NUCLEOID PROTEINS AND MACROMOLECULAR CROWDING IN CONDENSING DNA." Biophysical Reviews and Letters 02, no. 03n04 (October 2007): 259–65. http://dx.doi.org/10.1142/s1793048007000556.
Full textByun, Wan Gi, Jihye Lee, Seungtaek Kim, and Seung Bum Park. "Harnessing stress granule formation by small molecules to inhibit the cellular replication of SARS-CoV-2." Chemical Communications 57, no. 93 (2021): 12476–79. http://dx.doi.org/10.1039/d1cc05508a.
Full textQin, Sanbo, and Huan-Xiang Zhou. "Effects of Macromolecular Crowding on the Conformational Ensembles of Disordered Proteins." Journal of Physical Chemistry Letters 4, no. 20 (September 30, 2013): 3429–34. http://dx.doi.org/10.1021/jz401817x.
Full textCino, Elio A., Mikko Karttunen, and Wing-Yiu Choy. "Effects of Molecular Crowding on the Dynamics of Intrinsically Disordered Proteins." PLoS ONE 7, no. 11 (November 26, 2012): e49876. http://dx.doi.org/10.1371/journal.pone.0049876.
Full textWei, Yuzhang, Isabel Mayoral-Delgado, Nicolas A. Stewart, and Marcus K. Dymond. "Macromolecular crowding and membrane binding proteins: The case of phospholipase A1." Chemistry and Physics of Lipids 218 (January 2019): 91–102. http://dx.doi.org/10.1016/j.chemphyslip.2018.12.006.
Full textLemetti, Laura, Sami-Pekka Hirvonen, Dmitrii Fedorov, Piotr Batys, Maria Sammalkorpi, Heikki Tenhu, Markus B. Linder, and A. Sesilja Aranko. "Molecular crowding facilitates assembly of spidroin-like proteins through phase separation." European Polymer Journal 112 (March 2019): 539–46. http://dx.doi.org/10.1016/j.eurpolymj.2018.10.010.
Full textde Vries, Renko. "DNA condensation in bacteria: Interplay between macromolecular crowding and nucleoid proteins." Biochimie 92, no. 12 (December 2010): 1715–21. http://dx.doi.org/10.1016/j.biochi.2010.06.024.
Full textShahid, Sumra, Ikramul Hasan, Faizan Ahmad, Md Imtaiyaz Hassan, and Asimul Islam. "Carbohydrate-Based Macromolecular Crowding-Induced Stabilization of Proteins: Towards Understanding the Significance of the Size of the Crowder." Biomolecules 9, no. 9 (September 12, 2019): 477. http://dx.doi.org/10.3390/biom9090477.
Full textGupta, Munishwar Nath, and Vladimir N. Uversky. "Pre-Molten, Wet, and Dry Molten Globules en Route to the Functional State of Proteins." International Journal of Molecular Sciences 24, no. 3 (January 26, 2023): 2424. http://dx.doi.org/10.3390/ijms24032424.
Full textBokvist, Marcus, and Gerhard Gröbner. "Misfolding of Amyloidogenic Proteins at Membrane Surfaces: The Impact of Macromolecular Crowding." Journal of the American Chemical Society 129, no. 48 (December 2007): 14848–49. http://dx.doi.org/10.1021/ja076059o.
Full textCheung, M. S., D. Klimov, and D. Thirumalai. "Molecular crowding enhances native state stability and refolding rates of globular proteins." Proceedings of the National Academy of Sciences 102, no. 13 (March 21, 2005): 4753–58. http://dx.doi.org/10.1073/pnas.0409630102.
Full textHouser, Justin R., David J. Busch, David R. Bell, Brian Li, Pengyu Ren, and Jeanne C. Stachowiak. "The impact of physiological crowding on the diffusivity of membrane bound proteins." Soft Matter 12, no. 7 (2016): 2127–34. http://dx.doi.org/10.1039/c5sm02572a.
Full textRoman, Marisa I., Guoliang Yang, and Frank Ferrone. "Non Linear Effects of Macromolecular Crowding on the Mechanical Unfolding of Proteins." Biophysical Journal 104, no. 2 (January 2013): 566a. http://dx.doi.org/10.1016/j.bpj.2012.11.3138.
Full textKrepel, Dana, and Yaakov Levy. "Intersegmental transfer of proteins between DNA regions in the presence of crowding." Physical Chemistry Chemical Physics 19, no. 45 (2017): 30562–69. http://dx.doi.org/10.1039/c7cp05251k.
Full textGoldenberg, David P., and Brian Argyle. "Self Crowding of Globular Proteins Studied by Small-Angle X-Ray Scattering." Biophysical Journal 106, no. 4 (February 2014): 895–904. http://dx.doi.org/10.1016/j.bpj.2013.12.004.
Full textKumar, Rajesh, Rajesh Kumar, Deepak Sharma, Mansi Garg, Vinay Kumar, and Mukesh Chand Agarwal. "Macromolecular crowding-induced molten globule states of the alkali pH-denatured proteins." Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1866, no. 11 (November 2018): 1102–14. http://dx.doi.org/10.1016/j.bbapap.2018.08.012.
Full textGarner, M. M., and M. B. Burg. "Macromolecular crowding and confinement in cells exposed to hypertonicity." American Journal of Physiology-Cell Physiology 266, no. 4 (April 1, 1994): C877—C892. http://dx.doi.org/10.1152/ajpcell.1994.266.4.c877.
Full textYang, Yin, Shen-Na Chen, Feng Yang, Xia-Yan Li, Akiva Feintuch, Xun-Cheng Su, and Daniella Goldfarb. "In-cell destabilization of a homodimeric protein complex detected by DEER spectroscopy." Proceedings of the National Academy of Sciences 117, no. 34 (August 11, 2020): 20566–75. http://dx.doi.org/10.1073/pnas.2005779117.
Full textHöfig, Henning, Michele Cerminara, Ilona Ritter, Antonie Schöne, Martina Pohl, Victoria Steffen, Julia Walter, Ignacio Vergara Dal Pont, Alexandros Katranidis, and Jörg Fitter. "Single-Molecule Studies on a FRET Biosensor: Lessons from a Comparison of Fluorescent Protein Equipped versus Dye-Labeled Species." Molecules 23, no. 12 (November 27, 2018): 3105. http://dx.doi.org/10.3390/molecules23123105.
Full textYu, Isseki, Takaharu Mori, Tadashi Ando, Ryuhei Harada, Jaewoon Jung, Yuji Sugita, and Michael Feig. "Dynamics and Interactions of Proteins and Metabolites in Cellular Crowding Environments: All-Atom Molecular Dynamics Study of Proteins and Metabolites in Cellular Crowding Environments: All-atom Molecular Dynamics Study." Biophysical Journal 114, no. 3 (February 2018): 190a. http://dx.doi.org/10.1016/j.bpj.2017.11.1063.
Full textMadden, T. L., and J. Herzfeld. "Crowding-induced organization of cytoskeletal elements: II. Dissolution of spontaneously formed filament bundles by capping proteins." Journal of Cell Biology 126, no. 1 (July 1, 1994): 169–74. http://dx.doi.org/10.1083/jcb.126.1.169.
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