Dissertations / Theses on the topic 'Protein vibration'
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SCARAMOZZINO, DOMENICO. "Elastic Lattice Models: From Proteins to Diagrid Tall Buildings." Doctoral thesis, Politecnico di Torino, 2021. http://hdl.handle.net/11583/2872326.
Full textKarjalainen, Eeva-Liisa. "The choreography of protein vibrations : Improved methods of observing and simulating the infrared absorption of proteins." Doctoral thesis, Stockholms universitet, Institutionen för biokemi och biofysik, 2011. http://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-60415.
Full textAt the time of the doctoral defense, the following paper was unpublished and had a status as follows: Paper 5: Manuscript.
Vural, Derya. "The vibrational amplitude of atoms in proteins." Access to citation, abstract and download form provided by ProQuest Information and Learning Company; downloadable PDF file, 86 p, 2009. http://proquest.umi.com/pqdweb?did=1885607701&sid=3&Fmt=2&clientId=8331&RQT=309&VName=PQD.
Full textSowley, Hugh Richard. "Electron-vibration-vibration two-dimensional infrared spectroscopy as a structural probe of interactions in proteins and DNA." Thesis, Imperial College London, 2017. http://hdl.handle.net/10044/1/57959.
Full textBASSANI, ANDREA. "Terahertz vibrations in proteins: experimental and numerical investigation." Doctoral thesis, Politecnico di Torino, 2017. http://hdl.handle.net/11583/2673736.
Full textSimpson, Niall. "Accessing ultrafast protein dynamics through 2DIR spectroscopy of intrinsic ligand vibrations." Thesis, University of Strathclyde, 2015. http://oleg.lib.strath.ac.uk:80/R/?func=dbin-jump-full&object_id=26003.
Full textGiraud, Gerard. "Ultrafast vibrational dynamics in liquids and proteins." Thesis, University of Strathclyde, 2003. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.275153.
Full textBrewster, Victoria Louise. "Investigating protein modifications using vibrational spectroscopy and fluorescence spectroscopy." Thesis, University of Manchester, 2013. https://www.research.manchester.ac.uk/portal/en/theses/investigating-protein-modifications-using-vibrational-spectroscopy-and-fluorescence-spectroscopy(32ff24c8-326a-41cf-a076-11e067376525).html.
Full textJoutsuka, Tatsuya. "Proton/Electron Transfer and Vibrational Relaxation in Solution and Protein." 京都大学 (Kyoto University), 2012. http://hdl.handle.net/2433/157807.
Full textWilson, Gary. "Vibrational Raman optical activity of peptides and proteins." Thesis, University of Glasgow, 1996. http://theses.gla.ac.uk/6144/.
Full textWong, Hing-wan. "Study of chemically modified food proteins by vibrational spectroscopy." View the Table of Contents & Abstract, 2006. http://sunzi.lib.hku.hk/hkuto/record/B36995939.
Full textHorness, Rachel E. "Application and Development of Site?specific Vibrational Probes of Proteins." Thesis, Indiana University, 2018. http://pqdtopen.proquest.com/#viewpdf?dispub=10977701.
Full textConformational heterogeneity and protein dynamics play important roles in molecular recognition, but are experimentally difficult to characterize with sufficient temporal and spatial resolution. Infrared (IR) spectroscopy can probe protein dynamics on sub-ps timescales; and further, the small size of vibrational chromophores combined with site-selective incorporation of spectrally isolated IR probes provides high spatial resolution. Herein, we site-specifically introduce nitrile and carbon-deuterium bonds at distinct sites in the Src-homology 3 (SH3) domain from yeast protein Sho1 and its proline-rich peptide binding partner from Pbs2 to examine the underlying mechanisms of molecular recognition via IR spectroscopy. Further, we present efforts at developing instrumentation aimed at improving characterization of weakly absorbing vibrational probes in strongly absorbing solvent.
Nitrile probes were introduced at six distinct sites in the SH3 domain via amber codon suppression. Variation between the observed absorbance bands indicates site specific differences in conformational heterogeneity imposed by protein domain. Residue-specific changes upon peptide binding are observed at incorporated nitrile moieties, but are more dramatically observed for deuterated vibrational probes incorporated within the peptide binding partner. Deuterated amino acids were incorporated at highly conserved proline residues within the peptide ligand. Upon binding, absorbance bands are observed which indicate population of multiple conformational states in the bound complex. Only single resonances were observed by characterization of the same labeled bonds by NMR, suggesting rapid interconversion on the NMR timescale. Results suggest that the SH3 domain recognizes its peptide binding partner with at least elements of an induced-fit mechanism.
Characterization of the vibrational probes used above can be challenging due to the path length limitation imposed by the presence of strongly absorbing solvent water. This places an upper bound on the achievable signal strength which can obscure small (µOD) absorbance bands. To confront this limitation we have constructed an absorbance spectrometer with a quantum cascade laser (QCL) source. The instrument allows characterization of samples of increased path length with similar signal-to-noise ratios as in FT IR measurements. Achievable signal-to-noise ratios are limited by QCL source noise; we present several approaches, one electronic and one interferometric, aimed at limiting the deleterious effect of QCL fluctuations.
Hertel, Sebastian. "Pulmonary delivery of pharmaceutical proteins by means of vibrating mesh nebulization." Diss., Ludwig-Maximilians-Universität München, 2014. http://nbn-resolving.de/urn:nbn:de:bvb:19-172792.
Full textRaj, Sharad K. "Chemical Information Based Elastic Network Model: A Novel Way To Identification Of Vibration Frequencies In Proteins." Amherst, Mass. : University of Massachusetts Amherst, 2009. http://scholarworks.umass.edu/theses/261/.
Full textSchmüser-Steger, Lars [Verfasser]. "Vibrational sum frequency generation pectroscopy of proteins at interfaces / Lars Schmüser-Steger." Mainz : Universitätsbibliothek Mainz, 2018. http://d-nb.info/1166350223/34.
Full textYegres, Michelle. "Probing the effect of conformational changes in protein complexes by vibrational spectroscopy : bioenergetics and allostery." Phd thesis, Université de Strasbourg, 2014. http://tel.archives-ouvertes.fr/tel-01048738.
Full textHertel, Sebastian [Verfasser], and Gerhard [Akademischer Betreuer] Winter. "Pulmonary delivery of pharmaceutical proteins by means of vibrating mesh nebulization / Sebastian Hertel. Betreuer: Gerhard Winter." München : Universitätsbibliothek der Ludwig-Maximilians-Universität, 2014. http://d-nb.info/1063874890/34.
Full textAsses, Yasmine. "Conception par modélisation et criblage in silico d'inhibiteurs du récepteur c-Met." Phd thesis, Université Henri Poincaré - Nancy I, 2011. http://tel.archives-ouvertes.fr/tel-00653609.
Full textWilcox, Kieaibi. "Using regression analyses for the determination of protein structure from FTIR spectra." Thesis, University of Manchester, 2014. https://www.research.manchester.ac.uk/portal/en/theses/using-regression-analyses-for-the-determination-of-protein-structure-from-ftir-spectra(1ad037eb-f237-4efe-867a-597239bd913e).html.
Full textSchkolnik, Gal [Verfasser], and Peter [Akademischer Betreuer] Hildebrandt. "Vibrational Stark Spectroscopy as a Tool for Probing Electrostatics at Protein Surfaces and Self Assembled Monolayers / Gal Schkolnik. Betreuer: Peter Hildebrandt." Berlin : Universitätsbibliothek der Technischen Universität Berlin, 2012. http://d-nb.info/1028912951/34.
Full textAgathangelou, Damianos. "Anabaena Sensory Rhodopsin : effect of mutations on the ultrafast photo-isomerization dynamics." Thesis, Strasbourg, 2019. http://www.theses.fr/2019STRAE001/document.
Full textASR, is a photoreceptor protein that binds the protonated Schiff base of retinal in two ground state conformations. The particular protein consists a model system where the effect of the protein environment on the isomerization dynamics of the two isomers can be investigated. In this thesis an extended study on point mutated proteins is presented where the variable is the protein environment. The results show significant differences between the two isomers excited state lifetimes with the shorter or longer lifetimes commented in terms of Sl/S2 electronic mixing. Supplementary, the experimental development of a Transient absorption spectrometer (T.A) and a Two-dimensional electronic spectroscopy setup (2DES) operating in the NIR and UV-Vis spectral range respectively are described. The 2DES spectrometer is based on translating wedges made out of birefringent material producing two collinear phase-locked pulses with sub-I Ofs duration. The interferometric precision on controlling the delay between the two pump pulses allows to perform 2DES measurements on systems absorbing in the 360-430 nm range allowing to resolve the excitation process spectrally
Maggi, Luca [Verfasser], Paolo [Akademischer Betreuer] Carloni, and Benjamin [Akademischer Betreuer] Stamm. "How vibrational energy exchange study in proteins can shed the light on important biological functions / Luca Maggi ; Paolo Carloni, Benjamin Stamm." Aachen : Universitätsbibliothek der RWTH Aachen, 2020. http://d-nb.info/1240689373/34.
Full textForbrig, Enrico [Verfasser], Peter [Akademischer Betreuer] Hildebrandt, Peter [Gutachter] Hildebrandt, Thomas [Gutachter] Gutsmann, and Peter [Gutachter] Hegemann. "Investigation of membrane-active peptides and proteins by vibrational spectroscopy / Enrico Forbrig ; Gutachter: Peter Hildebrandt, Thomas Gutsmann, Peter Hegemann ; Betreuer: Peter Hildebrandt." Berlin : Technische Universität Berlin, 2018. http://d-nb.info/1165138891/34.
Full textPolander, Brandon C. "The hydrogen-bonded water network in the oxygen-evolving complex of photosystem II." Diss., Georgia Institute of Technology, 2013. http://hdl.handle.net/1853/50222.
Full textSintorn, Johan. "Enclosing and Mounting an Electronic Component on Articulated Haulers : A proposition on how to protect, and where to place, an intelligent node on the environmentally harsh exterior of construction equipment with respect to multiple parameters." Thesis, Linköpings universitet, Maskinkonstruktion, 2016. http://urn.kb.se/resolve?urn=urn:nbn:se:liu:diva-134053.
Full textKielb, Patrycja [Verfasser], Inez M. [Akademischer Betreuer] Weidinger, Peter [Akademischer Betreuer] Hildebrandt, Peter [Gutachter] Hildebrandt, Inez M. [Gutachter] Weidinger, and Arne [Gutachter] Thomas. "Redox processes of heme proteins and metalloporphyrins studied by vibrational spectroelectrochemistry / Patrycja Kielb ; Gutachter: Peter Hildebrandt, Inez M. Weidinger, Arne Thomas ; Inez M. Weidinger, Peter Hildebrandt." Berlin : Technische Universität Berlin, 2017. http://d-nb.info/1156014883/34.
Full textEberl, Katharina Barbara [Verfasser], Jens [Akademischer Betreuer] Bredenbeck, Jens [Gutachter] Bredenbeck, and Josef [Gutachter] Wachtveitl. "Applying non-canonical amino acids for investigation of vibrational energy transfer and dynamic allostery in a synaptic protein domain / Katharina Barbara Eberl ; Gutachter: Jens Bredenbeck, Josef Wachtveitl ; Betreuer: Jens Bredenbeck." Frankfurt am Main : Universitätsbibliothek Johann Christian Senckenberg, 2020. http://d-nb.info/1222102676/34.
Full textMüller-Werkmeister, Henrike [Verfasser], Jens [Gutachter] Bredenbeck, and Harald [Gutachter] Schwalbe. "Unnatural amino acids as novel probes for ultrafast 2D-IR spectroscopy of proteins : towards real-time investigation of biomolecular dynamics and vibrational energy flow / Henrike Müller-Werkmeister ; Gutachter: Jens Bredenbeck, Harald Schwalbe." Frankfurt am Main : Universitätsbibliothek Johann Christian Senckenberg, 2017. http://d-nb.info/1139048546/34.
Full textHarb, Zeinab. "Détermination théorique des paramètres RMN de métabolites et protéines." Phd thesis, Université Claude Bernard - Lyon I, 2011. http://tel.archives-ouvertes.fr/tel-00740957.
Full textRagain, Christina Marie. "Role of local electrostatic fields in protein-protein and protein-solvent interactions determined by vibrational Stark effect spectroscopy." Thesis, 2014. http://hdl.handle.net/2152/24949.
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Fafarman, Aaron Thomas Boxer Steven G. Chidsey Christopher E. D. Pecora Robert. "Quantitative measurement of electrostatic fields in proteins using vibrational probes." 2010. http://purl.stanford.edu/mb274tk4375.
Full textRitchie, Andrew William. "Quantifying electrostatic fields at protein interfaces using classical electrostatics calculations." Thesis, 2015. http://hdl.handle.net/2152/31346.
Full textStafford, Amy Jo. "Electrostatic fields at the functional interface of the protein Ral guanine nucleotide dissociation stimulator determined by vibrational Stark effect spectroscopy." Thesis, 2011. http://hdl.handle.net/2152/ETD-UT-2011-12-4685.
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Ogren, John Isaac. "Vibrational spectroscopy of an optogenetic rhodopsin: a biophysical study of molecular mechanisms." Thesis, 2015. https://hdl.handle.net/2144/16343.
Full text"Calculating Infrared Spectra of Proteins and Other Organic Molecules Based on Normal Modes." Doctoral diss., 2012. http://hdl.handle.net/2286/R.I.15193.
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Ph.D. Physics 2012
Pazderka, Tomáš. "Studium struktury a dynamiky proteinů pomocí optické spektroskopie." Doctoral thesis, 2018. http://www.nusl.cz/ntk/nusl-389831.
Full textVíšová, Ivana. "Charakterizace proteinů dráhy 2'-5' oligoadenylátů pomocí vibrační spektroskopie." Master's thesis, 2015. http://www.nusl.cz/ntk/nusl-350883.
Full textFriedrich, Marcel Günther [Verfasser]. "Vibrational spectroscopic and electrochemical investigations of multi-centered heme proteins in biomimetic membrane architectures / vorgelegt von Marcel Günther Friedrich." 2009. http://d-nb.info/992048931/34.
Full textKrupová, Monika. "Teorie a aplikace optické aktivity biomolekul." Doctoral thesis, 2021. http://www.nusl.cz/ntk/nusl-447991.
Full textWinkler, Kathrin. "Ultraschnelle, lichtinduzierte Primärprozesse im elektronisch angeregten Zustand des Grün Fluoreszierenden Proteins (GFP)." Doctoral thesis, 2003. http://hdl.handle.net/11858/00-1735-0000-0006-B0C1-3.
Full textTerrett, Richard Norman Leslie. "Computational Investigation of the Oxygen Evolving Complex of Photosystem II and Related Models via Density Functional Theory." Phd thesis, 2017. http://hdl.handle.net/1885/133592.
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