Relevant bibliographies by topics / Protein patterning

Academic literature on the topic 'Protein patterning'

Author: Grafiati
Published: 4 June 2021
Last updated: 1 February 2022

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Journal articles on the topic "Protein patterning"

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Blawas, A. S., and W. M. Reichert. "Protein patterning." Biomaterials 19, no. 7-9 (April 1998): 595–609. http://dx.doi.org/10.1016/s0142-9612(97)00218-4.

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Biancardo, Susan B. N., Henrik J. Pranov, and Niels B. Larsen. "Protein In-Mold Patterning." Advanced Materials 20, no. 10 (May 19, 2008): 1825–29. http://dx.doi.org/10.1002/adma.200702859.

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Bélisle, Jonathan M., Dario Kunik, and Santiago Costantino. "Rapid multicomponent optical protein patterning." Lab on a Chip 9, no. 24 (2009): 3580. http://dx.doi.org/10.1039/b911967a.

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Ekblad, Tobias, and Bo Liedberg. "Protein adsorption and surface patterning." Current Opinion in Colloid & Interface Science 15, no. 6 (December 2010): 499–509. http://dx.doi.org/10.1016/j.cocis.2010.07.008.

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Atsuta, K., H. Noji, and S. Takeuchi. "Protein patterning by micro fabrication technology." Seibutsu Butsuri 43, supplement (2003): S118. http://dx.doi.org/10.2142/biophys.43.s118_4.

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Takamatsu, Seiichi, Kazunori Hoshino, Kiyoshi Matsumoto, Tsutomu Miyasaka, and Isao Shimoyama. "Photosensitive protein patterning with electrophoretic deposition." IEICE Electronics Express 7, no. 11 (2010): 779–84. http://dx.doi.org/10.1587/elex.7.779.

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Ando, A., M. A. Sayed, T. Asano, R. Tero, K. Kitano, T. Urisu, and S. Hamaguchi. "Protein patterning by atmospheric-pressure plasmas." Journal of Physics: Conference Series 232 (June 1, 2010): 012019. http://dx.doi.org/10.1088/1742-6596/232/1/012019.

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Ganesan, Ramakrishnan, Karl Kratz, and Andreas Lendlein. "Multicomponent protein patterning of material surfaces." Journal of Materials Chemistry 20, no. 35 (2010): 7322. http://dx.doi.org/10.1039/b926690a.

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Hoff, J. Damon, Li-Jing Cheng, Edgar Meyhöfer, L. Jay Guo, and Alan J. Hunt. "Nanoscale Protein Patterning by Imprint Lithography." Nano Letters 4, no. 5 (May 2004): 853–57. http://dx.doi.org/10.1021/nl049758x.

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Zervoudis, Nicholas A., and Allie C. Obermeyer. "The effects of protein charge patterning on complex coacervation." Soft Matter 17, no. 27 (2021): 6637–45. http://dx.doi.org/10.1039/d1sm00543j.

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Charge patterned polypeptides modulate the complex coacervation of globular proteins with polymers. These protein coacervates have applications in protein encapsulation and delivery and in determining the function of biomolecular condensates.
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Dissertations / Theses on the topic "Protein patterning"

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Deb, Joyita. "Protein-hormone interactions patterning the gynoecium." Thesis, University of East Anglia, 2015. https://ueaeprints.uea.ac.uk/54301/.

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The gynoecium is among the most intricately patterned organs of the plant, comprisingdifferent tissue sub-structures, all with the purpose of facilitating propagation to the next generation. It is therefore representative of the complexity involved in the initiation and establishment of organ patterning and presents a unique model to study the mechanisms coordinating development. As with all other organs, the interplay between genetic and hormonal factors specifies carpel development. However, although much is known about the genetic components involved in carpel development, our understanding of hormonal regulation and the cross-talk between these two pathways is limited. Thus, the aim of this thesis has been to address this issue by obtaining an integrated view of the genetic and hormonal regulatory mechanisms which act to coordinate gynoecium development. It has done so using broadly two approaches: first, by characterising the transcription factor interactions which pattern the carpel, and second, by elucidating the cross-talk between these interactions and the plant hormone auxin. Further, it has also studied the role of auxin in carpel morphogenesis. Observations from this research have uncovered a novel auxin co-receptor complex formed by the transcription factors IND and ETT. The co-receptor binds the IAA molecule directly and exhibits specificity for IAA over the synthetic analogues NAA and 2,4-D. This coreceptor functions to coordinate the development of the style and stigmatic tissues of the carpel, possibly via the regulation of PID kinase. Further, this work has also identified novel roles in protein-protein dimerisation for the domains involved in this interaction. Analyses also indicate that this novel auxin signalling pathway may also be conserved in the Brassicaceae through the ETT orthologues in this family. Finally, this project has analysed how ETT’s role as an auxin receptor could be translated into precise spatiotemporal regulation of its target genes to specify the boundaries necessary for gynoecium patterning. Together, the results from this work have posed new questions as to the signalling mechanisms through which auxin coordinates its varied and numerous functions in plants.
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Patel, Nikin. "The immobilization and micro-patterning of protein." Thesis, University of Nottingham, 1998. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.262955.

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Cai, Yangjun. "Simple Alternative Patterning Techniques for Selective Protein Adsorption." University of Akron / OhioLINK, 2009. http://rave.ohiolink.edu/etdc/view?acc_num=akron1257386752.

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Sharma, Rajan. "Protein-mediated patterning of DNA scaffolds for nanoscale electronics." Thesis, University of Leeds, 2009. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.521527.

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Veiseh, Mandana. "Protein and cell patterning for cell-based biosensor applications /." Thesis, Connect to this title online; UW restricted, 2004. http://hdl.handle.net/1773/10563.

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Williams, Sophie Elizabeth. "Nanoscale surface patterning as a means of controlling protein immobilisation." Thesis, Cardiff University, 2008. http://orca.cf.ac.uk/55766/.

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It would be desirable to synthesise a molecularly imprinted polymer with specific high-affinity protein recognition sites as a durable, cost-effective replacement for antibodies in biotechnology. A novel protein imprinting approach was proposed as an outline for these investigations. The focus of this project was consideration of fundamental aspects of surface nanometer-scale patterning and protein-surface interactions with the aim of preparing an ordered array of surface protein. This was in part achieved during the course of the work. An equilibrium dialysis method was validated for the measurement of ligand-protein binding parameters. Human serum albumin (HSA) and ethacrynic acid (ETH) were chosen as the ligand-protein pair to be surface-immobilised. Molecular modelling suggested a good fit for ethacrynic acid in the covalent HSA binding 'cleft', however, the covalent HSA-ETH complex was not successfully isolated. A derivative of the ligand, ETH-glycine, was synthesised to a very high purity but a low yield. A gas-phase silanisation method was developed to deposit functional aminopropyletriethoxysilane (APS) groups onto silicon wafer surfaces. The dispersion of APS could not be sufficiently controlled, by changing the evaporative distance or the APS evaporation concentration, and hence it was not possible to bring about gold nanoparticle (AuNP) patterning at the nanometer scale using this approach. However AuNP patterning could be achieved by incubating APS monolayer surfaces with different dilutions of a commercially available AuNP solution. Subsequent development of a protein imprinting strategy would require that non-specifically adsorbed HSA can be removed from PNA silicon surfaces. This was found to be difficult to achieve using mild conditions. Controlled gas-phase deposition of APS could not be used to directly facilitate dispersed ligand attachment. AuNP patterning can potentially be used as an indirect method for controlling surface dispersion of immobilised ligand. Controlled surface orientation and patterning of HSA, using the specific interaction with ETH, remains a significant challenge.
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Ericsson, Emma. "Biosensor surface chemistry for oriented protein immobilization and biochip patterning." Licentiate thesis, Linköpings universitet, Sensorvetenskap och Molekylfysik, 2013. http://urn.kb.se/resolve?urn=urn:nbn:se:liu:diva-88102.

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This licentiate thesis is focused on two methods for protein immobilization to biosensor surfaces for future applications in protein microarray formats. The common denominator is a surface chemistry based on a gold substrate with a self-assembled monolayer (SAM) of functionalized alkanethiolates. Both methods involve photochemistry, in the first case for direct immobilization of proteins to the surface, in the other for grafting a hydrogel, which is then used for protein immobilization. Paper I describes the development and characterization of Chelation Assisted Photoimmobilization (CAP), a three-component surface chemistry that allows for covalent attachment and controlled orientation of the immobilized recognition molecule (ligand) and thereby provides a robust sensor surface for detection of analyte in solution. The concept was demonstrated using His-tagged IgG-Fc as the ligand and protein A as the analyte. Surprisingly, as concluded from IR spectroscopy and surface plasmon resonance (SPR) analysis, the binding ability of this bivalent ligand was found to be more than two times higher with random orientation obtained by amine coupling than with homogeneous orientation obtained by CAP. It is suggested that a multivalent ligand is less sensitive to orientation effects than a monovalent ligand and that island formation of the alkanethiolates used for CAP results in a locally high ligand density and steric hindrance. Paper II describes the development of nanoscale hydrogel structures. These were photografted on a SAM pattern obtained by dip-pen nanolithography (DPN) and subsequent backfilling. The hydrogel grew fast on the hydrophilic patterns and slower on the hydrophobic background, which contained a buried oligo(ethylene glycol) (OEG) chain. Using IR spectroscopy, it was found that the OEG part was degraded during UV light irradiation and acted as a sacrificial layer. In this process other OEG residues were exposed and acted as new starting points for the self-initiated photografting and photopolymerization (SIPGP). A biotin derivative was immobilized to the hydrogel density pattern and interaction with streptavidin was demonstrated by epifluorescence microscopy.
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Zamparini, Andrea. "The homeodomain protein Hex and the regulation of early embryonic patterning." Thesis, Open University, 2005. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.413801.

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Zhang, Feng. "Chemical Vapor Deposition of Silanes and Patterning on Silicon." BYU ScholarsArchive, 2010. https://scholarsarchive.byu.edu/etd/2902.

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Self assembled monolayers (SAMs) are widely used for surface modification. Alkylsilane monolayers are one of the most widely deposited and studied SAMs. My work focuses on the preparation, patterning, and application of alkysilane monolayers. 3-aminopropyltriethoxysilane (APTES) is one of the most popular silanes used to make active surfaces for surface modification. To possibly improve the surface physical properties and increase options for processing this material, I prepared and studied a series of amino silane surfaces on silicon/silicon dioxide from APTES and two other related silanes by chemical vapor deposition (CVD). I also explored CVD of 3-mercaptopropyltrimethoxysilane on silicon and quartz. Several deposition conditions were investigated. Results show that properties of silane monolayers are quite consistent under different conditions. For monolayer patterning, I developed a new and extremely rapid technique, which we termed laser activation modification of semiconductor surfaces or LAMSS. This method consists of wetting a semiconductor surface with a reactive compound and then firing a highly focused nanosecond pulse of laser light through the transparent liquid onto the surface. The high peak power of the pulse at the surface activates the surface so that it reacts with the liquid with which it is in contact. I also developed a new application for monolayer patterning. I built a technologically viable platform for producing protein arrays on silicon that appears to meet all requirements for industrial application including automation, low cost, and high throughput. This method used microlens array (MA) patterning with a laser to pattern the surface, which was followed by protein deposition. Stencil lithography is a good patterning technique compatible with monolayer modification. Here, I added a new patterning method and accordingly present a simple, straightforward procedure for patterning silicon based on plasma oxidation through a stencil mask. We termed this method subsurface oxidation for micropatterning silicon (SOMS).
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Corbett, Sybilla Louise. "Nanoscale patterning of complex DNA structures with the bacterial protein Recombinase A." Thesis, University of Leeds, 2016. http://etheses.whiterose.ac.uk/15373/.

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The use of DNA as a structural material has been intensively developed since its inception in the early 1980s. The potential of DNA structures in the field of materials science is hampered by current approaches to augmentation. It is not currently possible to alter the targeting of heterogenous additional elements to structures once they have been made. The post hoc patterning of DNA architectures is therefore of great importance. The bacterial protein Recombinase A (RecA) may be able to provide this function. This thesis will discuss the patterning of DNA structures with RecA. RecA has been shown to pattern linear dsDNA strands with high levels of efficiency. To test the potential of RecA to pattern more complex DNA, novel strategies for creating DNA topologies have been explored. This work has produced DNA strands containing regions of base pair mismatching and with terminal three-way junctions. A method has also been developed for the creation of a 200 base product with unpaired branched junctions, using four synthetic oligomers in a scaffolded cycling ligation reaction with a heat stable ligase. A method to create longer DNA strands with three-way junctions at the termini has also been developed. RecA patterning of a structure with internal mismatches was carried out. Mismatches proximal to the patterning area led to an increase in patterning efficiency with an increase in mismatch length. When the mismatch was separated from the patterning region a more complex relationship was observed, with intermediate-length mismatches resulting in a decrease in pattering efficiency. The introduction of a nick in the phosphate backbone proximal to the patterning region also increased patterning efficiency. Two further DNA structures were produced on which patterning did not prove possible. The ligase chain reaction was shown to produce DNA strands that could be incorporated into a structure with central base pairing and terminal single stranded DNA regions. Attempts to create three-way junctions from these structures were not successful. A second structure was created through treatment of double stranded DNA from the polymerase chain reaction. Single strands of DNA were produced that could be annealed to produce terminal three-way junctions. Atomic force microscopy demonstrated the correct annealing of this structure. However, it did not prove possible to pattern these structures with RecA. Recombinant RecA production through bacterial induction produced soluble protein at a high yield. There was some evidence of DNA contamination and the purified protein showed low activity.
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Books on the topic "Protein patterning"

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Thomas, Lufkin, ed. Murine homeobox gene control of embryonic patterning and organogenesis. Amsterdam: Elsevier, 2003.

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Lufkin, T. Murine Homeobox Gene Control of Embryonic Patterning and Organogenesis (Advances in Developmental Biology and Biochemistry). Elsevier Science, 2003.

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Tomanek, Lars. The heat shock response and its regulation in congeneric marine snails (genus Tegula) from different thermal habitats: Implications for the limits of thermotolerance and biogeographic patterning. 1999.

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Book chapters on the topic "Protein patterning"

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Costantino, Santiago. "Optical Protein Patterning." In Neuromethods, 423–35. New York, NY: Springer New York, 2015. http://dx.doi.org/10.1007/978-1-4939-2313-7_23.

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Colpo, Pascal, Ana Ruiz, Laura Ceriotti, and François Rossi. "Surface Functionalization for Protein and Cell Patterning." In Whole Cell Sensing Systems I, 109–30. Berlin, Heidelberg: Springer Berlin Heidelberg, 2009. http://dx.doi.org/10.1007/10_2009_2.

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Wang, Y., X. Cheng, Y. Hanein, A. Shastry, D. D. Denton, B. D. Ratner, and K. F. Böhringer. "Protein Patterning with Programmable Surface Chemistry Chips." In Micro Total Analysis Systems 2002, 482–84. Dordrecht: Springer Netherlands, 2002. http://dx.doi.org/10.1007/978-94-010-0295-0_161.

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Maden, Malcolm, Nick Waterson, Dennis Summerbell, Jean Maignon, Michel Darmon, and Braham Shroot. "The Role of Retinoic Acid and Cellular Retinoic Acid-Binding Protein in the Regenerating Amphibian Limb." In Developmental Patterning of the Vertebrate Limb, 89–96. Boston, MA: Springer US, 1991. http://dx.doi.org/10.1007/978-1-4615-3310-8_13.

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Bradley, Luke H. "High-Quality Combinatorial Protein Libraries Using the Binary Patterning Approach." In Methods in Molecular Biology, 117–28. New York, NY: Springer New York, 2014. http://dx.doi.org/10.1007/978-1-4939-1486-9_6.

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Lee, Chang-Soo, Sang-Ho Lee, Yun-Gon Kim, Yong-Kweon Kim, and Byung-Gee Kim. "Microfluidic Protein Patterning Controlled By Hydrophobic Surface and Pneumatic Control." In Micro Total Analysis Systems 2002, 879–81. Dordrecht: Springer Netherlands, 2002. http://dx.doi.org/10.1007/978-94-010-0504-3_93.

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Reiser, Anita, Matthias Lawrence Zorn, Alexandra Murschhauser, and Joachim Oskar Rädler. "Single Cell Microarrays Fabricated by Microscale Plasma-Initiated Protein Patterning (μPIPP)." In Methods in Molecular Biology, 41–54. New York, NY: Springer New York, 2018. http://dx.doi.org/10.1007/978-1-4939-7792-5_4.

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Shin, Dong-Sik, Kook-Nyung Lee, Woo-Jae Chung, Ki-Hoon Jang, Yong-Kweon Kim, and Yoon-Sik Lee. "Photochemical Selective Surface Modification Using Micromirror Array (MMA) and Protein Patterning." In Micro Total Analysis Systems 2001, 587–88. Dordrecht: Springer Netherlands, 2001. http://dx.doi.org/10.1007/978-94-010-1015-3_256.

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Costello, Cait, Jan-Ulrich Kreft, Christopher M. Thomas, and Paula M. Mendes. "Protein Nanoarrays for High-Resolution Patterning of Bacteria on Gold Surfaces." In Methods in Molecular Biology, 191–200. Totowa, NJ: Humana Press, 2011. http://dx.doi.org/10.1007/978-1-61779-319-6_15.

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Tsougeni, Katerina, Kosmas Ellinas, George Koukouvinos, Panagiota S. Petrou, Angeliki Tserepi, Sotirios E. Kakabakos, and Evangelos Gogolides. "3D Plasma Nanotextured® Polymeric Surfaces for Protein or Antibody Arrays, and Biomolecule and Cell Patterning." In Methods in Molecular Biology, 27–40. New York, NY: Springer New York, 2018. http://dx.doi.org/10.1007/978-1-4939-7792-5_3.

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Conference papers on the topic "Protein patterning"

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Nasabi, Mahyar, Arnan Mitchell, Kourosh Kalantar-Zadeh, and Warwick S. Nesbitt. "Microstamp patterning of protein arrays." In 2008 International Conference on Nanoscience and Nanotechnology (ICONN). IEEE, 2008. http://dx.doi.org/10.1109/iconn.2008.4639260.

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Thomson, David A., Jason P. Hayes, and Helmut Thissen. "Protein patterning in polycarbonate microfluidic channels." In Microelectronics, MEMS, and Nanotechnology, edited by Dan V. Nicolau, Uwe R. Muller, and John M. Dell. SPIE, 2004. http://dx.doi.org/10.1117/12.524675.

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Liu, Zhen, Zhitao Zhou, Hu Tao, and Keyin Liu. "Direct patterning using protein-based water lithography." In 2018 IEEE Micro Electro Mechanical Systems (MEMS). IEEE, 2018. http://dx.doi.org/10.1109/memsys.2018.8346600.

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Thompson, Dewayne L., Ashley E. Madon, and Christine A. Trinkle. "Diffusion-Mediated Production of Protein Gradients by Way of Variable Depth Hydrogel Microstamps." In ASME 2009 International Mechanical Engineering Congress and Exposition. ASMEDC, 2009. http://dx.doi.org/10.1115/imece2009-11292.

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The precise application of proteins and other biomolecules to create patterned surfaces is an important step in many processes, including the creation of biosensors and directed cell growth for tissue engineering [1, 2]. While traditional poly-dimethylsiloxane (PDMS) elastomeric stamps have been used to successfully transfer proteins with sub-micron resolution, the resulting patterns are limited to a single, uniform protein concentration. The technique presented here utilizes varied-topography hydrophilic stamps as a diffusion medium, allowing protein gradients to be easily applied and accurately reproduced. Specifically, stamps of a 2% agarose hydrogel are used to demonstrate variable-concentration patterning of a fluorescently-labeled protein.
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Lu, Bochao, and Michel M. Maharbiz. "Protein patterning using germanium as a sacrificial layer." In 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC). IEEE, 2017. http://dx.doi.org/10.1109/embc.2017.8037210.

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Nicolau, Dan V., Robert A. Cross, Nick Carter, and Takahisa Taguchi. "Protein patterning using bilayer lithography and confocal microscopy." In Microlithography '99, edited by Will Conley. SPIE, 1999. http://dx.doi.org/10.1117/12.350244.

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Nicolau, Dan V. "Mechanism-dependent resolution for protein micro/nano-patterning." In Microlithography 2000, edited by Francis M. Houlihan. SPIE, 2000. http://dx.doi.org/10.1117/12.388330.

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Walti, Christoph, Rajan Sharma, and Giles Davies. "RecA protein mediated nano-scale patterning of DNA scaffolds." In 2010 IEEE 3rd International Nanoelectronics Conference (INEC 2010). IEEE, 2010. http://dx.doi.org/10.1109/inec.2010.5424745.

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Nicolau, Dan V. "Mechanisms for protein micro-/nano-patterning on photopolymer substrates." In BiOS 2000 The International Symposium on Biomedical Optics, edited by Raymond P. Mariella, Jr. SPIE, 2000. http://dx.doi.org/10.1117/12.379568.

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Aswani, Anil, Harendra Guturu, and Claire Tomlin. "System identification of hunchback protein patterning in early drosophila embryogenesis." In 2009 Joint 48th IEEE Conference on Decision and Control (CDC) and 28th Chinese Control Conference (CCC). IEEE, 2009. http://dx.doi.org/10.1109/cdc.2009.5400645.

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