Journal articles on the topic 'Protein flexibility'
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Ragone, R., F. Facchiano, A. Facchiano, A. M. Facchiano, and G. Colonna. "Flexibility plot of proteins." "Protein Engineering, Design and Selection" 2, no. 7 (1989): 497–504. http://dx.doi.org/10.1093/protein/2.7.497.
Full textVihinen, Mauno. "Relationship of protein flexibility to thermostability." "Protein Engineering, Design and Selection" 1, no. 6 (1987): 477–80. http://dx.doi.org/10.1093/protein/1.6.477.
Full textCioni, Patrizia, and Giovanni B. Strambini. "Pressure Effects on Protein Flexibility Monomeric Proteins." Journal of Molecular Biology 242, no. 3 (September 1994): 291–301. http://dx.doi.org/10.1006/jmbi.1994.1579.
Full textWang, Chu, Philip Bradley, and David Baker. "Protein–Protein Docking with Backbone Flexibility." Journal of Molecular Biology 373, no. 2 (October 2007): 503–19. http://dx.doi.org/10.1016/j.jmb.2007.07.050.
Full textGreene, Lesley H., Jay A. Grobler, Vladimir A. Malinovskii, Jie Tian, K. Ravi Acharya, and Keith Brew. "Stability, activity and flexibility in α-lactalbumin." Protein Engineering, Design and Selection 12, no. 7 (July 1999): 581–87. http://dx.doi.org/10.1093/protein/12.7.581.
Full textTeplyakov, Alexey, Thomas J. Malia, Galina Obmolova, Steven A. Jacobs, Karyn T. O'Neil, and Gary L. Gilliland. "Conformational flexibility of an anti-IL-13 DARPin†." Protein Engineering, Design and Selection 30, no. 1 (December 15, 2016): 31–37. http://dx.doi.org/10.1093/protein/gzw059.
Full textBerynskyy, Mykhaylo, and Rebecca C. Wade. "Treating Conformational Flexibility in Protein-Protein Docking." Current Physical Chemistry 3, no. 1 (January 1, 2013): 27–35. http://dx.doi.org/10.2174/1877946811303010006.
Full textFayos, Rosa, Giuseppe Melacini, Marceen G. Newlon, Lora Burns, John D. Scott, and Patricia A. Jennings. "Induction of Flexibility through Protein-Protein Interactions." Journal of Biological Chemistry 278, no. 20 (February 25, 2003): 18581–87. http://dx.doi.org/10.1074/jbc.m300866200.
Full textVasilache, Simina, Nazanin Mirshahi, Soo-Yeon Ji, James Mottonen, Donald J. Jacobs, and Kayvan Najarian. "A Signal Processing Method to Explore Similarity in Protein Flexibility." Advances in Bioinformatics 2010 (December 20, 2010): 1–8. http://dx.doi.org/10.1155/2010/454671.
Full textEhrlich, Lutz P., Michael Nilges, and Rebecca C. Wade. "The impact of protein flexibility on protein-protein docking." Proteins: Structure, Function, and Bioinformatics 58, no. 1 (October 28, 2004): 126–33. http://dx.doi.org/10.1002/prot.20272.
Full textGupta, S. P. "Protein Flexibility and Drug Design." Current Chemical Biology 12, no. 1 (July 16, 2018): 2. http://dx.doi.org/10.2174/221279681201180716130139.
Full textZhao, Qinyi. "Protein Flexibility as a Biosignal." Critical Reviews™ in Eukaryotic Gene Expression 20, no. 2 (2010): 157–70. http://dx.doi.org/10.1615/critreveukargeneexpr.v20.i2.60.
Full textRadivojac, P. "Protein flexibility and intrinsic disorder." Protein Science 13, no. 1 (January 1, 2004): 71–80. http://dx.doi.org/10.1110/ps.03128904.
Full textKumar, S., H. J. Wolfson, and R. Nussinov. "Protein flexibility and electrostatic interactions." IBM Journal of Research and Development 45, no. 3.4 (May 2001): 499–512. http://dx.doi.org/10.1147/rd.453.0499.
Full textTeilum, Kaare, Johan G. Olsen, and Birthe B. Kragelund. "Functional aspects of protein flexibility." Cellular and Molecular Life Sciences 66, no. 14 (March 24, 2009): 2231–47. http://dx.doi.org/10.1007/s00018-009-0014-6.
Full textHespenheide, Brandon M., Michael F. Thorpe, and Leslie A. Kuhn. "Protein flexibility and unfolding pathways." Journal of Molecular Graphics and Modelling 18, no. 4-5 (2000): 550. http://dx.doi.org/10.1016/s1093-3263(00)80113-8.
Full textBerjanskii, Mark, and David S. Wishart. "NMR: prediction of protein flexibility." Nature Protocols 1, no. 2 (July 6, 2006): 683–88. http://dx.doi.org/10.1038/nprot.2006.108.
Full textSeidl, Michael F., and Jörg Schultz. "Evolutionary flexibility of protein complexes." BMC Evolutionary Biology 9, no. 1 (2009): 155. http://dx.doi.org/10.1186/1471-2148-9-155.
Full textTeilum, Kaare, Johan G. Olsen, and Birthe B. Kragelund. "Protein stability, flexibility and function." Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1814, no. 8 (August 2011): 969–76. http://dx.doi.org/10.1016/j.bbapap.2010.11.005.
Full textVihinen, Mauno, Esa Torkkila, and Pentti Riikonen. "Accuracy of protein flexibility predictions." Proteins: Structure, Function, and Genetics 19, no. 2 (June 1994): 141–49. http://dx.doi.org/10.1002/prot.340190207.
Full textGrünberg, Raik, Michael Nilges, and Johan Leckner. "Flexibility and Conformational Entropy in Protein-Protein Binding." Structure 14, no. 4 (April 2006): 683–93. http://dx.doi.org/10.1016/j.str.2006.01.014.
Full textGrünberg, Raik, Michael Nilges, and Johan Leckner. "Flexibility and Conformational Entropy in Protein-Protein Binding." Structure 14, no. 7 (July 2006): 1205. http://dx.doi.org/10.1016/j.str.2006.06.003.
Full textBastard, Karine, Chantal Prévost, and Martin Zacharias. "Accounting for loop flexibility during protein-protein docking." Proteins: Structure, Function, and Bioinformatics 62, no. 4 (December 21, 2005): 956–69. http://dx.doi.org/10.1002/prot.20770.
Full textLi, Liwei, Shide Liang, Meaghan M. Pilcher, and Samy O. Meroueh. "Incorporating receptor flexibility in the molecular design of protein interfaces." Protein Engineering, Design and Selection 22, no. 9 (July 30, 2009): 575–86. http://dx.doi.org/10.1093/protein/gzp042.
Full textHuber, Robert. "Flexibility and Rigidity of Proteins and Protein–Pigment Complexes." Angewandte Chemie International Edition in English 27, no. 1 (January 1988): 79–88. http://dx.doi.org/10.1002/anie.198800791.
Full textDong, Qiwen, Kai Wang, Bin Liu, and Xuan Liu. "Characterization and Prediction of Protein Flexibility Based on Structural Alphabets." BioMed Research International 2016 (2016): 1–7. http://dx.doi.org/10.1155/2016/4628025.
Full textPeters, G. H., and R. P. Bywater. "Computational analysis of chain flexibility and fluctuations in Rhizomucor miehei lipase." Protein Engineering, Design and Selection 12, no. 9 (September 1999): 747–54. http://dx.doi.org/10.1093/protein/12.9.747.
Full textOpron, Kristopher, Kelin Xia, Zach Burton, and Guo-Wei Wei. "Flexibility-rigidity index for protein-nucleic acid flexibility and fluctuation analysis." Journal of Computational Chemistry 37, no. 14 (March 1, 2016): 1283–95. http://dx.doi.org/10.1002/jcc.24320.
Full textHrabe, Thomas, Zhanwen Li, Mayya Sedova, Piotr Rotkiewicz, Lukasz Jaroszewski, and Adam Godzik. "PDBFlex: exploring flexibility in protein structures." Nucleic Acids Research 44, no. D1 (November 28, 2015): D423—D428. http://dx.doi.org/10.1093/nar/gkv1316.
Full textAndersen, Claus A. F., Arthur G. Palmer, Søren Brunak, and Burkhard Rost. "Continuum Secondary Structure Captures Protein Flexibility." Structure 10, no. 2 (February 2002): 175–84. http://dx.doi.org/10.1016/s0969-2126(02)00700-1.
Full textMaguid, Sandra, Sebastián Fernández-Alberti, Gustavo Parisi, and Julián Echave. "Evolutionary Conservation of Protein Backbone Flexibility." Journal of Molecular Evolution 63, no. 4 (October 2006): 448–57. http://dx.doi.org/10.1007/s00239-005-0209-x.
Full textGünther, Stefan, Kristian Rother, and Cornelius Frömmel. "Molecular flexibility in protein–DNA interactions." Biosystems 85, no. 2 (August 2006): 126–36. http://dx.doi.org/10.1016/j.biosystems.2005.12.007.
Full textPeskin, Charles S., Dwight You., and Timothy C. Elston. "Protein Flexibility and the Correlation Ratchet." SIAM Journal on Applied Mathematics 61, no. 3 (January 2000): 776–91. http://dx.doi.org/10.1137/s0036139999353942.
Full textTeodoro, Miguel L., George N. Phillips, and Lydia E. Kavraki. "Understanding Protein Flexibility through Dimensionality Reduction." Journal of Computational Biology 10, no. 3-4 (June 2003): 617–34. http://dx.doi.org/10.1089/10665270360688228.
Full textMandell, Daniel J., and Tanja Kortemme. "Backbone flexibility in computational protein design." Current Opinion in Biotechnology 20, no. 4 (August 2009): 420–28. http://dx.doi.org/10.1016/j.copbio.2009.07.006.
Full textTaghizadeh, Mohammad, and Bahram Goliaei. "A Quantitative Measure of Protein Flexibility." Biophysical Journal 104, no. 2 (January 2013): 228a. http://dx.doi.org/10.1016/j.bpj.2012.11.1286.
Full textPatel, Shruti N., and Steffen P. Graether. "Increased flexibility decreases antifreeze protein activity." Protein Science 19, no. 12 (November 11, 2010): 2356–65. http://dx.doi.org/10.1002/pro.516.
Full textJacobs, Donald J., A. J. Rader, Leslie A. Kuhn, and M. F. Thorpe. "Protein flexibility predictions using graph theory." Proteins: Structure, Function, and Genetics 44, no. 2 (2001): 150–65. http://dx.doi.org/10.1002/prot.1081.
Full textRauh, Daniel, Gerhard Klebe, and Milton T. Stubbs. "Understanding Protein–Ligand Interactions: The Price of Protein Flexibility." Journal of Molecular Biology 335, no. 5 (January 2004): 1325–41. http://dx.doi.org/10.1016/j.jmb.2003.11.041.
Full textWei, Yufeng. "Death Effector Domain Flexibility in Mediating Protein-Protein Interactions." Biophysical Journal 108, no. 2 (January 2015): 513a. http://dx.doi.org/10.1016/j.bpj.2014.11.2809.
Full textKingsley, Laura J., and Markus A. Lill. "Including ligand-induced protein flexibility into protein tunnel prediction." Journal of Computational Chemistry 35, no. 24 (July 5, 2014): 1748–56. http://dx.doi.org/10.1002/jcc.23680.
Full textBrown, Craig, Karen Campos-León, Madeleine Strickland, Christopher Williams, Victoria Fairweather, R. Leo Brady, Matthew P. Crump, and Kevin Gaston. "Protein flexibility directs DNA recognition by the papillomavirus E2 proteins." Nucleic Acids Research 39, no. 7 (December 3, 2010): 2969–80. http://dx.doi.org/10.1093/nar/gkq1217.
Full textOpron, Kristopher, Kelin Xia, and Guo-Wei Wei. "Fast and anisotropic flexibility-rigidity index for protein flexibility and fluctuation analysis." Journal of Chemical Physics 140, no. 23 (June 21, 2014): 234105. http://dx.doi.org/10.1063/1.4882258.
Full textRoss, Eric D., Philip R. Hardwidge, and L. James Maher. "HMG Proteins and DNA Flexibility in Transcription Activation." Molecular and Cellular Biology 21, no. 19 (October 1, 2001): 6598–605. http://dx.doi.org/10.1128/mcb.21.19.6598-6605.2001.
Full textTanchuk, V. Yu, V. O. Tanin, and A. I. Vovk. "Analysis of conformational flexibility of loop 110-120 of protein tyrosine phosphatase 1B." Ukrainian Biochemical Journal 85, no. 6 (October 28, 2013): 73–80. http://dx.doi.org/10.15407/ubj85.05.073.
Full textHogues, Hervé, Francis Gaudreault, Christopher R. Corbeil, Christophe Deprez, Traian Sulea, and Enrico O. Purisima. "ProPOSE: Direct Exhaustive Protein–Protein Docking with Side Chain Flexibility." Journal of Chemical Theory and Computation 14, no. 9 (August 14, 2018): 4938–47. http://dx.doi.org/10.1021/acs.jctc.8b00225.
Full textZhou, Qi, Helin Li, Fang Li, Benpeng Zhang, Xiaojuan Wu, and Wei Wu. "Strategy and Mechanism of Rice Bran Protein Emulsion Stability Based on Rancidity-Induced Protein Oxidation: An Ultrasonic Case Study." Foods 11, no. 23 (December 2, 2022): 3896. http://dx.doi.org/10.3390/foods11233896.
Full textMAMONOVA, TATYANA B., ANNA V. GLYAKINA, MARIA G. KURNIKOVA, and OXANA V. GALZITSKAYA. "FLEXIBILITY AND MOBILITY IN MESOPHILIC AND THERMOPHILIC HOMOLOGOUS PROTEINS FROM MOLECULAR DYNAMICS AND FOLDUNFOLD METHOD." Journal of Bioinformatics and Computational Biology 08, no. 03 (June 2010): 377–94. http://dx.doi.org/10.1142/s0219720010004690.
Full textKnegtel, Ronald M. A., Rolf Boelens, and Robert Kaptein. "Monte Carlo docking of protein-DNA complexes: incorporation of DNA flexibility and experimental data." "Protein Engineering, Design and Selection" 7, no. 6 (1994): 761–68. http://dx.doi.org/10.1093/protein/7.6.761.
Full textMerkley, Eric D., William W. Parson, and Valerie Daggett. "Temperature dependence of the flexibility of thermophilic and mesophilic flavoenzymes of the nitroreductase fold." Protein Engineering, Design and Selection 23, no. 5 (January 18, 2010): 327–36. http://dx.doi.org/10.1093/protein/gzp090.
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