Journal articles on the topic 'Promoter Recognition'
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Fickett, James W., and Artemis G. Hatzigeorgiou. "Eukaryotic Promoter Recognition." Genome Research 7, no. 9 (September 1, 1997): 861–78. http://dx.doi.org/10.1101/gr.7.9.861.
Full textMao, Steve. "Mechanism of promoter recognition." Science 362, no. 6421 (December 20, 2018): 1372.11–1374. http://dx.doi.org/10.1126/science.362.6421.1372-k.
Full textShen, Li, Xiaogeng Feng, Yuan Yuan, Xudong Luo, Thomas P. Hatch, Kelly T. Hughes, Jun S. Liu, and You-xun Zhang. "Selective Promoter Recognition by Chlamydial σ28 Holoenzyme." Journal of Bacteriology 188, no. 21 (August 25, 2006): 7364–77. http://dx.doi.org/10.1128/jb.01014-06.
Full textBajic, V. B., S. H. Seah, A. Chong, G. Zhang, J. L. Y. Koh, and V. Brusic. "Dragon Promoter Finder: recognition of vertebrate RNA polymerase II promoters." Bioinformatics 18, no. 1 (January 1, 2002): 198–99. http://dx.doi.org/10.1093/bioinformatics/18.1.198.
Full textBUSBY, S. "Promoter structure, promoter recognition, and transcription activation in prokaryotes." Cell 79, no. 5 (December 1994): 743–46. http://dx.doi.org/10.1016/0092-8674(94)90063-9.
Full textBrunner, M., and H. Bujard. "Promoter recognition and promoter strength in the Escherichia coli system." EMBO Journal 6, no. 10 (October 1987): 3139–44. http://dx.doi.org/10.1002/j.1460-2075.1987.tb02624.x.
Full textDeng, Wensheng, Barbora Malecová, Thomas Oelgeschläger, and Stefan G. E. Roberts. "TFIIB Recognition Elements Control the TFIIA-NC2 Axis in Transcriptional Regulation." Molecular and Cellular Biology 29, no. 6 (December 29, 2008): 1389–400. http://dx.doi.org/10.1128/mcb.01346-08.
Full textHutchinson, Gordon. "International workshop tackles promoter recognition problem." Trends in Genetics 12, no. 4 (April 1996): 159. http://dx.doi.org/10.1016/0168-9525(96)30021-8.
Full textLukashin, A. V., V. V. Anshelevich, B. R. Amirikyan, A. I. Gragerov, and M. D. Frank-Kamenetskii. "Neural Network Models for Promoter Recognition." Journal of Biomolecular Structure and Dynamics 6, no. 6 (June 1989): 1123–33. http://dx.doi.org/10.1080/07391102.1989.10506540.
Full textWang, Lei, Yuli Guo, and Jay D. Gralla. "Regulation of Sigma 54-Dependent Transcription by Core Promoter Sequences: Role of −12 Region Nucleotides." Journal of Bacteriology 181, no. 24 (December 15, 1999): 7558–65. http://dx.doi.org/10.1128/jb.181.24.7558-7565.1999.
Full textKoo, B. M., V. A. Rhodius, G. Nonaka, P. L. deHaseth, and C. A. Gross. "Reduced capacity of alternative s to melt promoters ensures stringent promoter recognition." Genes & Development 23, no. 20 (October 15, 2009): 2426–36. http://dx.doi.org/10.1101/gad.1843709.
Full textMiroslavova, Nora S., and Stephen J. W. Busby. "Investigations of the modular structure of bacterial promoters." Biochemical Society Symposia 73 (January 1, 2006): 1–10. http://dx.doi.org/10.1042/bss0730001.
Full textBrodolin, Konstantin L., Vasily M. Studitsky, and Andrei D. Mirzabekov. "Conformational changes inE.coliRNA polymerase during promoter recognition." Nucleic Acids Research 21, no. 24 (1993): 5748–53. http://dx.doi.org/10.1093/nar/21.24.5748.
Full textOhler, U., S. Harbeck, H. Niemann, E. Noth, and M. G. Reese. "Interpolated markov chains for eukaryotic promoter recognition." Bioinformatics 15, no. 5 (May 1, 1999): 362–69. http://dx.doi.org/10.1093/bioinformatics/15.5.362.
Full textBhuiyan, Tanja, and H. Th Marc Timmers. "Promoter Recognition: Putting TFIID on the Spot." Trends in Cell Biology 29, no. 9 (September 2019): 752–63. http://dx.doi.org/10.1016/j.tcb.2019.06.004.
Full textBajic, V. B., A. Chong, Seng Hong Seah, and V. Brusic. "An intelligent system for vertebrate promoter recognition." IEEE Intelligent Systems 17, no. 4 (July 2002): 64–70. http://dx.doi.org/10.1109/mis.2002.1024754.
Full textAuble, David T., and Pieter L. DeHaseth. "Promoter recognition by Escherichia coli RNA polymerase." Journal of Molecular Biology 202, no. 3 (August 1988): 471–82. http://dx.doi.org/10.1016/0022-2836(88)90279-3.
Full textAyers, Deborah G., David T. Auble, and Pieter L. deHaseth. "Promoter recognition by Escherichia coli RNA polymerase." Journal of Molecular Biology 207, no. 4 (June 1989): 749–56. http://dx.doi.org/10.1016/0022-2836(89)90241-6.
Full textMüller, Ferenc, and Làszlò Tora. "The multicoloured world of promoter recognition complexes." EMBO Journal 23, no. 1 (December 18, 2003): 2–8. http://dx.doi.org/10.1038/sj.emboj.7600027.
Full textRömer, Patrick, Simone Hahn, Tina Jordan, Tina Strauß, Ulla Bonas, and Thomas Lahaye. "Plant Pathogen Recognition Mediated by Promoter Activation of the Pepper Bs3 Resistance Gene." Science 318, no. 5850 (October 26, 2007): 645–48. http://dx.doi.org/10.1126/science.1144958.
Full textSOROKIN, ANATOLY A., ALEXANDR A. OSYPOV, TIMUR R. DZHELYADIN, PETR M. BESKARAVAINY, and SVETLANA G. KAMZOLOVA. "ELECTROSTATIC PROPERTIES OF PROMOTER RECOGNIZED BYE. COLIRNA POLYMERASE Eσ70." Journal of Bioinformatics and Computational Biology 04, no. 02 (April 2006): 455–67. http://dx.doi.org/10.1142/s0219720006002077.
Full textStawicki, Scott Stevenson, and C. Cheng Kao. "Spatial Perturbations within an RNA Promoter Specifically Recognized by a Viral RNA-Dependent RNA Polymerase (RdRp) Reveal That RdRp Can Adjust Its Promoter Binding Sites." Journal of Virology 73, no. 1 (January 1, 1999): 198–204. http://dx.doi.org/10.1128/jvi.73.1.198-204.1999.
Full textRoss, Wilma, Sarah E. Aiyar, Julia Salomon, and Richard L. Gourse. "Escherichia coli Promoters with UP Elements of Different Strengths: Modular Structure of Bacterial Promoters." Journal of Bacteriology 180, no. 20 (October 15, 1998): 5375–83. http://dx.doi.org/10.1128/jb.180.20.5375-5383.1998.
Full textVulliémoz, Diane, and Laurent Roux. "Given the Opportunity, the Sendai Virus RNA-Dependent RNA Polymerase Could as Well Enter Its Template Internally." Journal of Virology 76, no. 16 (August 15, 2002): 7987–95. http://dx.doi.org/10.1128/jvi.76.16.7987-7995.2002.
Full textGaal, Tamas, Wilma Ross, Shawn T. Estrem, Lam H. Nguyen, Richard R. Burgess, and Richard L. Gourse. "Promoter recognition and discrimination by EsigmaS RNA polymerase." Molecular Microbiology 42, no. 4 (November 2001): 939–54. http://dx.doi.org/10.1046/j.1365-2958.2001.02703.x.
Full textKnudsen, S. "Promoter2.0: for the recognition of PolII promoter sequences." Bioinformatics 15, no. 5 (May 1, 1999): 356–61. http://dx.doi.org/10.1093/bioinformatics/15.5.356.
Full textD'Alessio, J. A., R. Ng, H. Willenbring, and R. Tjian. "Core promoter recognition complex changes accompany liver development." Proceedings of the National Academy of Sciences 108, no. 10 (February 22, 2011): 3906–11. http://dx.doi.org/10.1073/pnas.1100640108.
Full textMatsunaga, Michio, and Judith A. Jaehning. "Intrinsic Promoter Recognition by a “Core” RNA Polymerase." Journal of Biological Chemistry 279, no. 43 (September 1, 2004): 44239–42. http://dx.doi.org/10.1074/jbc.c400384200.
Full textGordon, L., A. Ya Chervonenkis, A. J. Gammerman, I. A. Shahmuradov, and V. V. Solovyev. "Sequence alignment kernel for recognition of promoter regions." Bioinformatics 19, no. 15 (October 10, 2003): 1964–71. http://dx.doi.org/10.1093/bioinformatics/btg265.
Full textChristensen, Lisa Lystbæk, and Jytte Josephsen. "The Methyltransferase from the LlaDII Restriction-Modification System Influences the Level of Expression of Its Own Gene." Journal of Bacteriology 186, no. 2 (January 15, 2004): 287–95. http://dx.doi.org/10.1128/jb.186.2.287-295.2004.
Full textEggers, Christian H., Melissa J. Caimano, and Justin D. Radolf. "Analysis of Promoter Elements Involved in the Transcriptional Initiation of RpoS-Dependent Borrelia burgdorferi Genes." Journal of Bacteriology 186, no. 21 (November 1, 2004): 7390–402. http://dx.doi.org/10.1128/jb.186.21.7390-7402.2004.
Full textSchornack, Sebastian, Kristin Peter, Ulla Bonas, and Thomas Lahaye. "Expression Levels of avrBs3-Like Genes Affect Recognition Specificity in Tomato Bs4- But Not in Pepper Bs3-Mediated Perception." Molecular Plant-Microbe Interactions® 18, no. 11 (November 2005): 1215–25. http://dx.doi.org/10.1094/mpmi-18-1215.
Full textMans, Ruud M. W., and Dagmar Knebel-Mörsdorf. "In Vitro Transcription of pe38/Polyhedrin Hybrid Promoters Reveals Sequences Essential for Recognition by the Baculovirus-Induced RNA Polymerase and for the Strength of Very Late Viral Promoters." Journal of Virology 72, no. 4 (April 1, 1998): 2991–98. http://dx.doi.org/10.1128/jvi.72.4.2991-2998.1998.
Full textTsukihashi, Yoshihiro, Tsuyoshi Miyake, Masashi Kawaichi, and Tetsuro Kokubo. "Impaired Core Promoter Recognition Caused by Novel Yeast TAF145 Mutations Can Be Restored by Creating a Canonical TATA Element within the Promoter Region of the TUB2Gene." Molecular and Cellular Biology 20, no. 7 (April 1, 2000): 2385–99. http://dx.doi.org/10.1128/mcb.20.7.2385-2399.2000.
Full textRooney, R. J., P. Raychaudhuri, and J. R. Nevins. "E4F and ATF, two transcription factors that recognize the same site, can be distinguished both physically and functionally: a role for E4F in E1A trans activation." Molecular and Cellular Biology 10, no. 10 (October 1990): 5138–49. http://dx.doi.org/10.1128/mcb.10.10.5138-5149.1990.
Full textRooney, R. J., P. Raychaudhuri, and J. R. Nevins. "E4F and ATF, two transcription factors that recognize the same site, can be distinguished both physically and functionally: a role for E4F in E1A trans activation." Molecular and Cellular Biology 10, no. 10 (October 1990): 5138–49. http://dx.doi.org/10.1128/mcb.10.10.5138.
Full textZamudio-Ochoa, Angelica, Yaroslav I. Morozov, Azadeh Sarfallah, Michael Anikin, and Dmitry Temiakov. "Mechanisms of mitochondrial promoter recognition in humans and other mammalian species." Nucleic Acids Research 50, no. 5 (February 22, 2022): 2765–81. http://dx.doi.org/10.1093/nar/gkac103.
Full textSanfaçon, Hélène. "Regulation of mRNA formation in plants: lessons from the cauliflower mosaic virus transcription signals." Canadian Journal of Botany 70, no. 5 (May 1, 1992): 885–99. http://dx.doi.org/10.1139/b92-113.
Full textSchmitt-Ney, M., W. Doppler, R. K. Ball, and B. Groner. "Beta-casein gene promoter activity is regulated by the hormone-mediated relief of transcriptional repression and a mammary-gland-specific nuclear factor." Molecular and Cellular Biology 11, no. 7 (July 1991): 3745–55. http://dx.doi.org/10.1128/mcb.11.7.3745-3755.1991.
Full textSchmitt-Ney, M., W. Doppler, R. K. Ball, and B. Groner. "Beta-casein gene promoter activity is regulated by the hormone-mediated relief of transcriptional repression and a mammary-gland-specific nuclear factor." Molecular and Cellular Biology 11, no. 7 (July 1991): 3745–55. http://dx.doi.org/10.1128/mcb.11.7.3745.
Full textPupov, Danil, Daria Esyunina, Andrey Feklistov, and Andrey Kulbachinskiy. "Single-strand promoter traps for bacterial RNA polymerase." Biochemical Journal 452, no. 2 (May 10, 2013): 241–48. http://dx.doi.org/10.1042/bj20130069.
Full textAmaya, Edward, Anastasia Khvorova, and Patrick J. Piggot. "Analysis of Promoter Recognition In Vivo Directed by ςF of Bacillus subtilis by Using Random-Sequence Oligonucleotides." Journal of Bacteriology 183, no. 12 (June 15, 2001): 3623–30. http://dx.doi.org/10.1128/jb.183.12.3623-3630.2001.
Full textKlauck, Hugo André, Gabriel Dall’Alba, Scheila de Avila e Silva, and Ana Paula Longaray Delamare. "Prediction and Recognition of Gram-Negative Bacterial Promoter Sequences: An Analysis of Available Web Tools." Journal of Biotechnology Research, no. 67 (July 2, 2020): 90–97. http://dx.doi.org/10.32861/jbr.67.90.97.
Full textPotamias, George, and Alexandros Kanterakis. "Feature Selection for the Promoter Recognition and Prediction Problem." International Journal of Data Warehousing and Mining 3, no. 3 (July 2007): 60–78. http://dx.doi.org/10.4018/jdwm.2007070105.
Full textKondrakhin, Y. V., A. E. Kel, N. A. Kolchanov, A. G. Romashchenko, and L. Milanesi. "Eukaryotic promoter recognition by binding sites for transcription factors." Bioinformatics 11, no. 5 (1995): 477–88. http://dx.doi.org/10.1093/bioinformatics/11.5.477.
Full textWerner, T. "The state of the art of mammalian promoter recognition." Briefings in Bioinformatics 4, no. 1 (January 1, 2003): 22–30. http://dx.doi.org/10.1093/bib/4.1.22.
Full textYan, Yi-Yong, Jing Lin, Tian-Miao Ou, Jia-Heng Tan, Ding Li, Lian-Quan Gu, and Zhi-Shu Huang. "Selective recognition of oncogene promoter G-quadruplexes by Mg2+." Biochemical and Biophysical Research Communications 402, no. 4 (November 2010): 614–18. http://dx.doi.org/10.1016/j.bbrc.2010.10.065.
Full textLee, Dong-Hoon, Naum Gershenzon, Malavika Gupta, Ilya P. Ioshikhes, Danny Reinberg, and Brian A. Lewis. "Functional Characterization of Core Promoter Elements: the Downstream Core Element Is Recognized by TAF1." Molecular and Cellular Biology 25, no. 21 (November 1, 2005): 9674–86. http://dx.doi.org/10.1128/mcb.25.21.9674-9686.2005.
Full textRani, T. Sobha, and Raju S. Bapi. "Analysis of n-Gram based Promoter Recognition Methods and Application to Whole Genome Promoter Prediction." In Silico Biology 9, no. 1,2 (2009): S1—S16. http://dx.doi.org/10.3233/isb-2009-0388.
Full textKamzolova, S. G., V. S. Sivozhelezov, A. A. Sorokin, T. R. Dzhelyadin, N. N. Ivanova, and R. V. Polozov. "RNA Polymerase—Promoter Recognition. Specific Features of Electrostatic Potential of “Early” T4 Phage DNA Promoters." Journal of Biomolecular Structure and Dynamics 18, no. 3 (December 2000): 325–34. http://dx.doi.org/10.1080/07391102.2000.10506669.
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