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1

Kage, Daniel. "Studies on fluorophore-loaded polymer microbeads and luminescence lifetime encoding in flow cytometry." Doctoral thesis, Humboldt-Universität zu Berlin, 2019. http://dx.doi.org/10.18452/20608.

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Die Dissertation umfasst zwei Themenblöcke: Zum einen wurden die optisch-spektroskopischen Eigenschaften von fluoreszenten, farbstoffbeladenen Polymer-Mikropartikeln untersucht. Zum anderen wurde die Anwendbarkeit solcher Partikel für die Lumineszenzlebensdauer-Kodierung in der Durchflusszytometrie evaluiert. Die Charakterisierung der farbstoffbeladenen Mikropartikel erfolgte mittels optischer Spektroskopie. Am Beispiel mit Rhodamin 6G beladener Polymethylmethacrylat-Partikel konnte ein besseres Verständnis des Einbaus der Farbstoffmoleküle und der resultierenden Fluoreszenz-Charakteristika gewonnen werden. Es stellte sich heraus, dass die Beladungseffizienz stark vom mittleren Partikeldurchmesser und den Synthesebedingungen abhängt. In Verbindung mit den beobachteten optisch-spektroskopischen Eigenschaften wurde geschlussfolgert, dass sich eine farbstoffreiche Schicht an der Oberfläche der Partikel bildet, die sich wesentlich von den sterisch eingebauten Farbstoffmoleküle im Partikelvolumen unterscheidet. Hohe Farbstoffkonzentrationen in dieser Oberflächenschicht führen vermutlich zu Aggregation. Des Weiteren deuten Veränderungen der Fluoreszenzeigenschaften auf intrapartikuläre Energiewanderung bei zunehmender Farbstoffkonzentration hin. Diese Interpretation der experimentellen Ergebnisse konnte qualitativ durch einen Algorithmus zur Simulation der Energiewanderung bestätigt werden. Die Anwendbarkeit der Lumineszenzlebensdauer als Kodierungsparameter in der Zeitdomäne konnte unter Verwendung eines Durchflusszytometer-Prototypen analysiert werden. Die wohl größte Herausforderung bei der Lebensdauermessung in der Durchflusszytometrie ist die kurze Interaktionszeit zwischen Objekt und Anregungslicht. Synthetische Daten wurden herangezogen, um den Einfluss einzelner Messparameter und -bedingungen unabhängig voneinander abzuschätzen. Es konnte festgestellt werden, dass die Lumineszenzlebensdauer als Kodierungsparameter in der Zeitdomäne prinzipiell zugänglich ist.
This thesis comprises two main topics. First, the optical-spectroscopic properties of fluorescent microbeads loaded with organic dyes were studied. In the second part, the feasibility of time-domain luminescence lifetime encoding in flow cytometry based on such microbeads was assessed. The study of the dye-loaded polymer microbeads was based on optical spectroscopy. Poly(methyl methacrylate) beads loaded with rhodamine 6G were used as an example system to achieve a better understanding of the dye incorporation procedure. The dye loading efficiency turned out to be strongly dependent on the mean diameter of the beads and on the amounts of certain compounds used for the bead synthesis. In correlation with the observed fluorescence characteristics, it was deduced that a layer with high local dye concentration forms around each bead. The properties of this layer substantially differ from those of the sterically incorporated dye molecules in the bead core. The high dye concentration in this layer results in aggregation accompanied by the respective changes of the fluorescence characteristics of the beads. Moreover, the observed changes in fluorescence properties indicated the existence of an intra-particulate energy migration process at increased dye loading concentrations. A simulation of the energy migration process based on a random walk algorithm confirmed the interpretation of the experimental results. For the assessment of luminescence lifetime encoding in time-domain flow cytometry, a prototype setup was used. The main issue of lifetime determination in flow cytometry is represented by the short interaction time of only tens of microseconds of the objects with the excitation light spot. Synthetic data were used to study certain measurement parameters and conditions as well as the data analysis procedure independently of other influences. As a result, luminescence lifetime is generally applicable as an encoding parameter in time-domain flow cytometry.
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2

Kage, Daniel [Verfasser], Stefan [Gutachter] Kirstein, Oliver [Gutachter] Benson, and Michael [Gutachter] Kumke. "Studies on fluorophore-loaded polymer microbeads and luminescence lifetime encoding in flow cytometry / Daniel Kage ; Gutachter: Stefan Kirstein, Oliver Benson, Michael Kumke." Berlin : Humboldt-Universität zu Berlin, 2019. http://d-nb.info/1198207000/34.

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3

Khan, Ikram Ullah. "Microfluidic-assisted synthesis and release properties of multi-domain polymer microparticles drug carriers." Thesis, Strasbourg, 2014. http://www.theses.fr/2014STRAF042/document.

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Les caractéristiques et les propriétés de libération de microparticules chargées de médicament dépendent de la nature des matériaux employés, des propriétés physicochimiques des microparticules, du choix de la méthode de production, et enfin des propriétés des molécules encapsulées. A l'inverse de la plupart des méthodes conventionnelles, les méthodes microfluidiques présentent l’avantage de bien mieux contrôler la génération de gouttelettes, leur taille et leur distribution de tailles. Ainsi des dispositifs microfluidiques à base de capillaires ont été développés pour obtenir des microbilles de polymère mais également des microparticules de type janus, coeur-écorce ou troyenne, toutes monodisperses en taille et chargées de médicament(s). Ces particules ont été produites à partir de solutions de monomère qui furent polymérisées par irradiations UV de telle sorte à garder intacte l'activité des molécules chargées. Ces dispositifs peuvent être assemblés dans un court laps de temps et un simple changement dans leur conception permet d’obtenir des morphologies de particules très différentes. Ces particules ont été développées dans le but de résoudre les problèmes rencontrés dans l’administration orale de médicaments. Par exemple les microbilles peuvent être utilisées pour délivrer des anti-inflammatoires non stéroïdiens de manière continue tandis que les particules Janus peuvent libérer, simultanément et sur le même site, deux principes actifs possédant des propriétés complètement différentes (solubilité, compatibilité) également de manière prolongée. Quant aux particules coeur-écorce, elles ont été conçues pour cibler la région du côlon de l'intestin humain, et y libérer simultanément deux médicaments. Les particules troyennes furent synthétisées à l’aide d’un procédé microfluidique semi-continu qui a permis une manipulation plus sécurisée des nanoparticules vectrices ainsi que la libération continue d’un médicament dans un liquide gastrique simulé. Chaque système a été entièrement caractérisé pour assurer l’invariance entre lots et la reproductibilité. En général, la libération des ingrédients actifs a pu être facilement contrôlée/ajustée par le réglage des paramètres opératoires et de matériaux tels que les débits des différentes phases, la nature et la concentration du médicament, des (co)monomères, des agents tensioactif et de réticulation, le pH du milieu de libération. Ces différents paramètres influencent les propriétés des microparticules telles que leur morphologie, forme, taille et densité de réticulation du réseau polymère
Characteristics and release properties of drug loaded microparticles depend upon material used and choice of production method. Conversely to most of the conventional ones, microfluidic methods give an edge by improving the control over droplet generation, size and size distribution. Capillary-based microfluidic devices were successfully used to obtain monodisperse drug(s) loaded microbeads, janus, core-shell and trojan particles using UV initiated free radical polymerization while keeping activity of active loaded molecules. These devices can be assembled in a short period of time and a slight change in design gives completely different microparticles morphologies. These particles were developed with the aim to address different issues experienced in oral drug delivery. For instance microbeads can be used to deliver NASIDs in a sustained release manner while janus particles can release two APIs with completely different properties (solubility, compatibility) also in a sustained release manner. Core-shell particles were designed to target colonic region of human intestine for dual drug delivery. Trojan particles were synthesized in a new semi-continuous microfluidic process, thus improving nanoparticles safety handling and release in simulated gastric fluid. Each system was fully characterized to insure batch to batch consistency and reproducibility. In general, the release of active ingredients was controlled by tuning the operating and material parameters like phases flow rates, nature and concentration of drug, (co)monomers, surfactant and crosslinker, pH of release media with the result of different particle morphologies, sizes and shapes or matrix crosslinking density
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4

Wong, Christopher James, and chrisjwong@yahoo com au. "High Resolution Polymer Gel Dosimetry for Small and Micro Field Dosimetry, and Development of Innovative Polymer Gel Dosimeters." RMIT University. Medical Sciences, 2009. http://adt.lib.rmit.edu.au/adt/public/adt-VIT20091002.161512.

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Current radiotherapy techniques are focused on delivering effective treatments while sparing surrounding healthy tissues. As a result, radiotherapy treatments are using narrower and more tightly conforming therapy techniques. For these treatments to be effective an accurate measure of the dose delivered by these very narrow radiotherapy beams, both in and around the target volume, is required. It is a challenging task for the conventional type dosimeters to determine dose distribution in such small fields. The best example of such fields is microbeam beam radiotherapy (MRT), a developing treatment technique that takes this requirement even further. MRT delivers an array of micrometre size radiotherapy beams to the target. MRT has been shown to be highly effective, but reliable dosimetry of MRT is challenging due to the micrometre scales involved. Attempts to determine the MRT dose distribution have been documented for using special type dosimeters such as radioch romic film and MOSFET detectors, as well as Monte Carlo simulations. This thesis investigates polymer gels as a dosimeter for dose distribution measurements of small radiotherapy fields and microbeams. Polymer gel dosimetry is a technique which uses a tissue-equivalent gel to act as both a three-dimensional dosimeter and a phantom at the same time. These gels polymerise when exposed to ionising radiation and the response is locally dose dependent linearly. This thesis investigates the use of polymer gels for the dosimetry of small sub-centimetre (down to 3 × 3 mm2) and micrometre radiotherapy fields. A high resolution imaging technique is also required for such small beam dosimetry. This work used special high strength MRI scanners to analyse polymer gels at high resolution. This work explores the feasibility of polymer gels irradiated by microbeams and analysed using Raman spectroscopy as a dosimeter for synchrotron generated microbeams. MRT is characterised by very high doses, and special high-dose resistive types of gel were developed as part of this work. It is shown that polymer gels imagined using Raman spectroscopy techniques are capable of measuring the dose distribution of microbeam radiation techniques. This thesis also investigates the use of polymer gels to measure dose perturbations caused by metallic artefacts. Metallic artefacts, such as a surgical aneurysm clip, can be left in a patient and cause dose perturbations during radiotherapy procedures. Polymer gels were used to determine the degree of dose enhancement induced by an aneurysm clip placed inside when irradiated with a typical stereotactic radiotherapy procedure. In addition, this thesis used gels in several other innovative applications. Photonuclear interactions generated in gel by high energy x-ray beams were measured via secondary neutrons. Special clear-type gels that do not change colour with irradiation were developed. Polymer gels were investigated for dosimetry of an extremely high dose rate capacitor type linear accelerator. And polymer gels were for measurement of a high energy proton beam.
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5

Wu, Mei. "Polymer microarrays for microbial high-content screening." Thesis, University of Edinburgh, 2012. http://hdl.handle.net/1842/7664.

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Research on the interactions between microbes and polymeric materials constitutes an important part in antimicrobial identification and provides an insight into microbial response on the polymer surfaces. Herein, a high-content screening method with polymer microarray technology was developed to investigate microbe-polymer interactions, especially in studying adhesion/repellence of microbes (bacteria and parasites). Firstly, the polymer microarray approach was used to successfully identify polymers which either selectively captured or prevented the binding of major food-borne pathogen, Salmonella Typhimurium. A parallel study with a lab strain of Escherichia coli was also carried out, revealing polymers which either displayed a common binding activity or which exhibited species discrimination. Likewise, this polymer microarray technology was applied to more bacterial strains, such as Campylobacter, Clostridium, Streptococcus, Klebsiella and their cocktails to discover families of substrates that displayed strong broad-spectrum bacterial non-binding activity. These synthetic polymers represented a novel class of coating materials which can be used to prevent surface colonisation and subsequent formation of bacterial biofilms. The study of protozoan-polymer interactions was also explored in this thesis. Polymers were identified which either bound or prevented parasites (Crysporidium parvum and Giardia lamblia) binding. Material properties, including wettability, surface roughness and polymer composition were analysed to study correlation of parasite binding and the generation of polymer structure function relationships.
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6

Drew, D. W. "A novel MeV ion microbeam technique for measuring diffusion of small molecules in polymeric & biological matrices." Thesis, University of Surrey, 1996. http://epubs.surrey.ac.uk/843536/.

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This thesis describes initially the development of novel MeV ion micro-beam techniques. It then discusses their application to the measurement of the diffusion of small molecules in polymeric and biological matrices which hitherto were not possible. The matrices studied were skin tissue, human hair, polymeric cable insulation and hydrophilic polymers. The important novel aspects of the techniques are: Use of 3He scanning ion microbeam. Use of dual uncollimated charged particle detectors to measure induced nuclear reaction products. Use of a very thin window detector capable of detecting X-rays from elements heavier than beryllium. Fast freezing of samples with liquid nitrogen to freeze diffusion profiles and eliminate sample deformation. Use of a liquid nitrogen cooled target stage to both retain water and effectively eliminate beam heating effects when exposing samples to vacuum and the ion microbeam respectively.
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7

Zethof, Jeroen H. T. [Verfasser], Karsten [Gutachter] Kalbitz, Karsten [Akademischer Betreuer] Kalbitz, Georg [Gutachter] Guggenberger, and M. Estela [Gutachter] Nadal-Romero. "The role of extracellular polymeric substances from microbes in soil aggregate stabilization in semiarid grasslands / Jeroen H.T. Zethof ; Gutachter: Karsten Kalbitz, Georg Guggenberger, M. Estela Nadal-Romero ; Betreuer: Karsten Kalbitz." Dresden : Technische Universität Dresden, 2021. http://d-nb.info/1237320054/34.

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8

Souza, Cláudia Telles de. "Microestruturação de membranas de poli (tereftalato de etileno) por microfeixe de íons." reponame:Biblioteca Digital de Teses e Dissertações da UFRGS, 2013. http://hdl.handle.net/10183/83679.

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Neste trabalho, o processo de estruturação por microfeixe de íons foi utilizado para a produção de membranas microporosas em folhas comerciais de PET. O processo de estruturação por microfeixe de íons consiste basicamente na interação direta entre um feixe de íons de dimensões micrométricas com o material em questão. As zonas modificadas pelo feixe são removidas do restante do material através de um processo químico. Nesse contexto, durante o desenvolvimento deste trabalho, sistemáticas experimentais para o processo de estruturação foram desenvolvidas. Com o intuito de operacionalizar a linha de microfeixe presente no Laboratório de Implantação Iônica da UFRGS, foi necessário realizar um estudo aprofundado sobre o funcionamento de todo o sistema, verificando problemas e explorando a potencialidade de técnicas não convencionais de análise de materiais. O estudo sobre a sistemática de estruturação ocorreu através da investigação de parâmetros clássicos, como fluência utilizada durante a irradiação e tempo de ataque químico. Para atingir tais objetivos, amostras de poli (tereftalato de etileno) (Mylar) de 12 μm foram irradiadas com microfeixe de íons (H+ e He++) com energias de 3 e 2,2 MeV e fluências que variaram entre 1 x 1011 e 6 x 1015 íons/cm2. Posteriormente à irradiação, as amostras foram submetidas a um ataque químico com solução alcalina de hidróxido de sódio 6 M durante tempos que variaram de 0,5 à 60 minutos. A temperatura do ataque em todos os casos se manteve fixa em 60°C. A caracterização das amostras foi realizada através de microscopia eletrônica de varredura (MEV) e por microscopia de transmissão iônica (STIM). As amostras também foram caracterizadas através de medidas elétricas utilizando um circuito de corrente alternada. O processo de enxertia (grafting) foi testado nas membranas estruturadas, utilizando um hidrogel de PNIPAAm com concentrações de 0,340, 0,450 e 0,700 g/L. Tais resultados também foram analisados através de MEV. O estudo sobre a linha de microfeixe permitiu verificar a existência de problemas relacionados ao registro da carga elétrica durante as irradiações. Além disso, para o ajuste do foco do feixe de íons, foram feitas curvas de calibração de corrente para as lentes magnéticas considerando diferentes energias de feixe. O processo de estruturação através da técnica de microfeixe de íons se mostrou eficaz para a produção de estruturas regulares e definidas em folhas de PET. A fluência ótima de prótons a ser utilizada nos processos de estruturação foi estimada em 6 x 1014 íons/cm2. Para esta fluência, tempos de ataque químico inferiores a 1 minuto já são suficientes para corroer toda a parte irradiada. Entretanto, tempos um pouco mais longos (e.g. 2 minutos) tornam o processo mais reprodutível. Com relação à geometria das estruturas fabricadas, observou-se irregularidades em estruturas que, em princípio, deveriam ser simétricas. Esse problema foi atribuído à assimetria do feixe, proveniente de ajustes dos parâmetros de colimação do feixe. Finalmente, o estudo do processo de enxertia mostrou que o hidrogel adere nas paredes das estruturas, porém não as preenche. Para concentrações elevadas (e.g. 0,7 g/L) o processo não é tão eficiente, sendo que não é verificada a redução da área das microestruturas pela inserção do hidrogel. As medidas elétricas mostraram a existência de regimes distintos e dependentes da frequência da corrente alternada. Os polímeros apresentaram basicamente comportamentos resistivo e capacitivo.
In this work, the process of irradiation of PET foils with ion beams in the micrometer size range was used for the production of microporous membranes. Basically, this process consists on the direct interaction between the ion beam and the material under study. The regions modified by the beam are removed from the material through a chemical process. In this context, experimental procedures for the production process of the membranes were developed during the course of this work. In order to make the microbeam station of the Ion Implantation Laboratory of the Federal University of Rio Grande do Sul (UFRGS), it was necessary to perform a thorough study of the operational parameters of the system, thus allowing a proper identification of problems and providing grounds for pushing the technique to the frontier of materials science. To achieve such objectives, foils of polyethylene terephtalate (Mylar®) 12 μm thick were irradiated with H+ and He++ ions with 3 e 2,2 MeV respectively. Fluencies varied from 1 x 1011 and 6 x 1015 ions/cm2. After the irradiation, the foils were submitted to an etching procedure using alkaline solution of sodium hydroxide at 6 M during periods of time varying from 0,5 to 60 minutes. In all cases, the temperature of the etching was fixed at 60°C. The characterization of the samples was performed through scanning electron microscopy (SEM) and scanning transmission ion microscopy (STIM). The samples also were characterized by electric measurements using an AC current circuit. The process of grafting was tested on the structured membranes using a PNIPAAm hydrogel with concentrations of 0,340, 0,450 and 0,700 g/L. The results of this study were also analyzed through MEV. With the present study, it was possible to pinpoint problems related to the integration and recording of the charge during the irradiations. Besides that, calibration curves were obtained relating the electric currents needed on the magnetic lenses for an optimal ion beam focus and the beam energy. The irradiation process with ion beam proved itself efficient for the production of regular patterns on PET foils. The optimum dose of prótons to be used on the patterning processes was estimated in 6 x 1014 ions/cm2. For this dose, etching times smaller than 1 minute were enough to remove all the irradiated area. However, times slightly longer (e.g. 2 minutes) make the process more reproducible. Regarding the geometry of the patterns generated by the ion irradiation, asymmetries were observed on structures that were supposed to be symmetric. This problem was attributed to the asymmetry of the beam spot on the target due to the settings of the objective slits that collimates the beam. The study of the grafting process showed that the hydrogel adheres to the structures walls, but does not fill it. For high concentrations (e.g. 0,7 g/L), the process is not efficient, since no reduction of the area of the microstructures by the insertion of the hydrogel was observed. The electric measurements showed the existence of distinct regimes as a function of the frequency of the alternate current. Basically, the polymer foils present resistive and capacitive behaviors.
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Liong, Rolan Yuk Loong. "BACTERIAL GROWTH ON METAL AND NON-METAL SURFACES IN A STATIC BIOREACTOR." DigitalCommons@CalPoly, 2013. https://digitalcommons.calpoly.edu/theses/923.

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Research was conducted to observe bacterial growth on the surface of metals in a static bioreactor. Metal and non-metal samples were subjected to bacterial exposure (1 day and 9 days). The metal samples were surface treated prior to bacterial exposure. The microstructures of the surface treated samples were analyzed by optical microscopy. After exposure, the microstructures of the samples were analyzed by scanning electron microscopy (SEM). The analysis suggested that microbial attachment on the surface was related to the underlying microstructure of steel. The preferential attachment of microbes could potentially be influenced by cathodic and anodic regions created by the electrolytic cells.
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10

Lewis, Patrick C. "Polymer microbeads for optical and biological applications." 2004. http://link.library.utoronto.ca/eir/EIRdetail.cfm?Resources__ID=81186&T=F.

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11

Cheung, Vincent W. "Biocompatible polymer coatings for implants in the peripheral nervous system : in vivo study of polymer-coated microbeads in the rat sciatic model." Thesis, 2020. http://hdl.handle.net/1866/25183.

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Introduction: Les implants dans le système nerveux périphérique (SNP) peuvent potentiellement restaurer les capacités sensorielles et motrices chez les patients avec des amputations des membres supérieures. Cependant, la réaction à un corps étrangers affecte significativement la fonction à long-terme et la biocompatibilité de ces systèmes avec le temps. Le dendrimère (DND) et la Poly-D-Lysine (PDL) sont deux polymères synthétiques qui peuvent potentiellement améliorer la performance de ces implants. Pour cette étude, notre objectif est de déterminer si ces polymères peuvent promouvoir la formation d’éléments présynaptiques sur des surfaces synthétiques in vivo dans un modèle animal. Méthodes: Pour l’étude in vivo, nous avons utilisé un modèle d’écrasement du nerf sciatique chez le rat. Des billes enduites de DND et PDL et contrôle ont été injectées dans le nerf sciatique aux sites d’écrasement et 5 mm distaux au site d’écrasement. Après 4, 6 et 8 semaines, les nerfs ont été retirés et marqués avec des anticorps spécifiques au neurofilament et à la synaptophysine. Nous avons ensuite compté le nombre d’éléments présynaptiques retrouvant sur la surface de chaque bille pour toutes les conditions. Pour l’étude de l’électrode, deux électrodes ont été implantées dans le nerf sciatique du rat. Nous avons ensuite effectué des enregistrements nerveux à chaque semaine, et le potentiel d’action dans le nerf a été mesuré en variant uniquement la largeur de l’impulsion. Résultats: L’étude in vivo a démontré que les billes enduites de DND pouvaient promouvoir une accumulation significative de synaptophysine sur leurs surfaces comparé aux billes contrôles de 4 à 8 semaines. À 4 semaines, les billes dans la condition DND avaient également une accumulation de synaptophysine significativement supérieure à celles dans la condition PDL pour le site distal à l’écrasement. L’étude de l’électrode a démontré que les deux électrodes pouvaient stimuler et acquérir des signaux nerveux du nerf sciatique jusqu’à 1 et 2 semaines respectivement avant de ne plus fonctionner. Conclusion: Les résultats de notre étude suggèrent que DND possède une propriété à promouvoir la synaptogenèse qui est supérieure à PDL in vivo et que notre modèle d’électrode peut être utilisé pour évaluer la stabilité du signal des implants SNP.
Background: Implants in the peripheral nervous system (PNS) can potentially restore sensory feedback, improve motor control and alleviate phantom-limb pain in upper-limb amputees. However, nervous system implants have poor long-term function and biocompatibility when implanted into the body due to foreign body reaction. Dendrimer (DND) and Poly-D-Lysine (PDL) are two synthetic polymers with properties that could improve the performance of these interfaces. In my masters’ research, my objective is to determine whether these synthetic polymers could promote the formation of presynaptic elements on artificial surfaces in vivo making intraneural implants more biocompatible and long-lasting. Methods: In the coated microsphere in vivo experiment, a nerve crush injury model in the rat was used for the study. PDL-coated, DND-coated and uncoated beads were injected into the rat sciatic nerve at the crush site and 5 mm distal to the crush site. The nerves were then harvested after 4, 6 and 8 weeks and stained for neurofilament and synaptophysin. Synaptophysin puncta were then counted on the bead surface for each group. Additionally, in a proof-of-concept experiment, two uncoated electrodes were implanted into the rat sciatic nerve. Nerve recordings were then performed every week, and the threshold nerve potential in the sciatic nerve was measured by only varying the pulse duration of the stimulation. Results: The coated microsphere in vivo experiment demonstrated that DND-coated microspheres had a significantly higher number of synaptophysin puncta around their surface from 4 to 8 weeks compared to uncoated beads. At 4 weeks, the DND condition also showed a significantly higher number of synaptophysin puncta around its microbeads vs. the PDL condition for the distal site. In the uncoated electrode in vivo experiment, the results showed that the two implants could stimulate and record threshold nerve potentials in the rat sciatic nerve for one week and two weeks respectively before being non-functional. Conclusion: Our study showed for the first time that DND has a stable synapse-promoting property that is superior to PDL in vivo and that our electrode design can be used to assess the long-term signal stability of peripheral nerve implants.
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Pan, Hsiao-Chun, and 潘曉群. "Study on DNA hybridization using single-stranded oligonucleotides immobilized on magnetic and non-magnetic polymer microbeads." Thesis, 2005. http://ndltd.ncl.edu.tw/handle/18093270677831127868.

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碩士
國立中正大學
化學工程所
93
Immobilized oligonucleotides have been widely used in the studies of molecular biology and clinical analysis, including affinity chromatography, peptide and oligonucleotides synthesis, biosensor and DNA-microchip technology. In this study, non-magnetic polymer microbeads having a particle diameter of ca. 2.0 µm were prepared by the dispersion polymerization of glycidyl-methacrylate(GMA) and styrene. For the application in DNA hybridization, the copolymerized beads were chemically modified to introduce aldehyde and amino groups, which were allowed for covalent or non-covalent linking of single-stranded oligouncleotides. At the same time, magnetic polymer microbeads, taking the advantages of easy separation in particle use, were also prepared by entrapping of magnetic material in the polymer microbeads and employed for the immobilization of single-stranded oligonucleotides. The efficiencies of hybridization through the use of magnetic and non-magnetic microbeads were compared. In the present study, a specific sequence of immobilized single-stranded oligouncleotides was assigned as the probe for the hybridization. The most appropriate time for hybridization was determined to be in the range from 20 minutes to one hour. Moreover, increasing the incubated concentration of probe increased the amount of probe immobilized on the microbeads. As the amount of bound probe increased, the amount of hybridization of the target became greater. According to the results from ten-times repeated hybridizations, the efficiency of hybridization won’t be significantly affected neither by the repetitive runs of hybridization nor the freezing process. In the meanwhile, it was proved that the hybridization of fluorescent target DNA to the immobilized probe on the polymer microbeads was unique, suggesting an extremely high value of application. Analyzing the efficiency of hybridization from different kinds of microbeads coupled with single-stranded oligouncleotides, it was found that the best way to prepare immobilized probe was the binding of 5’ amino-containing oligonucleotide on microbeads. The immobilization of 5’ biotin-labeled oligonucleotide on the microbeads bound with avidin was the second choice. The inferior one was the binding of 5’ phosphate-containing oligonucleotide on microbeads. In all oligonucleotide-immobilized protocols, magnetic microbeads were always better than non-magnetic ones. However, during the surface modification process for the binding of 5’ phosphate-containing oligonucleotide on microbeads, magnetic material could be lost to some extant, which may be a defect in application.
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Lin, Hui-Jung, and 林慧蓉. "Preparation of immobilized polynucleotides on non-porous polymer microbeads and their applications for DNA hybridization and recombination." Thesis, 2002. http://ndltd.ncl.edu.tw/handle/83739957594998542425.

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碩士
國立中正大學
化學工程研究所
90
Abstract Immobilized oligonucleotides have been widely used in the studies of molecular biology and clinical analysis, including affinity chromatography, peptide and oligonucleotide synthesis, biosensor and DNA-microchip technology. In this study, non-porous polymer beads with a particle diameter of ca. 2.0 m were prepared by the dispersion polymerization of glycidyl methacrylate (GMA) and styrene. For the applications in recombinant DNA and DNA hybridization, the copolymerized beads were chemically modified to introduce aldehyde and amino groups, and then covalently linked with protein and oligonucleotide, respectively. To reduce the purification steps in the conventional recombinant DNA method and improve the efficiency by preventing lose of plasmid and cloned DNA fregment, a novel method of DNA recombination on the non-porous polymer beads was proposed. The separation of DNA could be easily done by centrifugation, according to this solid phase recombinant DNA method. The oligonucleotide-immobilized non-porous particles were also used for DNA hybridization. These beads were proved to be stable and reusable by the study of repeated hybridization. After repeated hybridization/denaturation for five times, the efficiency of hybridization could retain at its initial value. For the application of solid phase PCR, non-porous polystyrene beads were also prepared by the method dispersion polymerization, and then treated with nitration and hydrogenation to introduce the amino groups on the surface. After covalent coupling of the primer (oligonucleotide) on their surface via amino group, these heatproof polystyrene beads were able to go through PCR. After the solid phase PCR, non-porous beads immobilizing with a specific double-stranded DNA were obtained and can be reusable for any biological or clinical purpose.
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14

Wei, Lijuan. "Microbead-based Raman/surface enhanced Raman scattering immunoassays for multiplex detection." Thesis, 2014. http://hdl.handle.net/2440/92665.

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Abstract:
The aim of this thesis project was to develop polymer microbead-based Raman/surface enhanced Raman scattering (SERS) immunoassay systems for the multiplex, specific and sensitive detection of biological molecules. Immunoglobulin G (IgG) was used as model proteins. In the system, gold nanoparticles (AuNPs) serve as SERS-active substrates. Different Raman-active molecules, such as 4-mercaptobenzoic acid (4MBA), can be easily self-assembled on the AuNPs as SERS tags. Polymer microbeads offer as immune-solid supports and provide Raman signatures. This study focused on the fabrication of different SERS tags, SERS-active microbeads and Raman spectroscopic-encoded microbeads for microbead-based Raman/SERS immunoassay development. Polymer microbead-based Raman/SERS immunoassay system was first developed using 50 nm AuNPs and 130-600 μm carboxylated polystyrene (PS) microbeads synthesised by suspension polymerisation. Antibodies (FITC-labelled donkey anti-goat IgG) were conjugated to polymer microbeads by EDC/NHS coupling chemistry. The SERS tags were comprised of Raman-active molecules (4MBA) and AuNPs. Antigens (DyLight™649- labelled goat anti-human IgG) were successfully conjugated on SERS tags to form SERS reporters. The immunoassay was performed by mixing the protein conjugated polymer microbeads and SERS reporters together. Due to the specific recognition between antibody and antigen, AuNPs can be attached on the surface of polymer microbeads. The results were verified using fluorescence imaging and Raman/SERS analysis. Since flow cytometry can rapidly sort large number of cells and particles in a short time, our intention was to take the advantages of both flow cytometry and Raman effects to develop Raman flow cytometry for multiplex and rapid detection. Therefore, monodisperse polymer microbeads with unique Raman signatures need to be synthesised. The preparation of the monodisperse polymer microbeads with specific Raman signatures was carried out by two approaches. Firstly, the SERS-active microbeads were synthesised by the deposition of AuNPs on the surface of polymer microbeads and the addition of the Raman-active molecules prior to silica coating. The preparation of polystyrene microbead/AuNP composite microspheres was achieved through two methods (direct adsorption and in-situ growth). The mechanism for the silica coating of polystyrene/AuNP composite microspheres was discussed in details. 4-mercaptophenol (4MP) was self-assembled on the composite microspheres, followed by silica coating to obtain the SERS-active microbeads. Secondly, the Raman spectroscopic-encoded copolymer microbeads were fabricated using styrene (Sty), 4-tertbutylstyrene (4tBS), and 4-methylstyrene (4MS) by dispersion polymerisation. Acrylic acid (AA) was used as the co-monomer to generate carboxyl groups on the surface of polymer microbeads. Six kinds of copolymer microbeads with the average diameters between 1.07 and 1.69 μm, including poly(Sty-AA), poly(Sty-4tBS-AA), poly(4tBS-AA), poly(Sty-4MS-AA), poly(4MS-AA), and poly(4tBS-4MS-AA), were synthesised with narrow size distribution and unique Raman fingerprints, which could be employed as spectroscopic-encoded microbeads in microbead-based Raman/SERS immunoassay system. Monodisperse polystyrene microbeads with 1.6 μm diameter were also used to perform the polymer microbead-based Raman/SERS immunoassays. A similar immunoassay system as previous was applied for IgG recognition based on AuNPs and monodisperse PS microbeads, which were sorted and analysed using flow cytometry and Raman equipment. In summary, the thesis proposed a new strategy for multiplex detection and reported the preliminary studies on polymer microbead-based Raman/SERS immunoassay. Different SERS-active microbeads and Raman spectroscopic-encoded copolymer microbeads have been successfully synthesised.
Thesis (Ph.D.) -- University of Adelaide, School of Chemical Engineering, 2014
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15

Ya-TingHsieh and 謝雅婷. "Microscopic and Microbeam X-ray Studies on Lamellar Assembly in Biodegradable Polymers, Copolymers, and Blends." Thesis, 2014. http://ndltd.ncl.edu.tw/handle/72gh9n.

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博士
國立成功大學
化學工程學系
102
This study has been focused on the spherulitic morphology of biodegradable polyesters, copolymer, and blends by using microscopic and microbeam X-ray techniques. Double ring-banded spherulites of biodegradable poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV with 12 wt% 3HV) blending with 30 wt% amorphous poly(vinyl acetate) (PVAc) were examined using polarized light optical microscopy (POM), scanning electron microscopy (SEM), atomic-force microscopy (AFM), and micro-beam X-ray diffraction. A ring-banded spherulite of PHBV/PVAc 70/30 blend was linearly scanned across the bands in 5 μm steps by means of microbeam X-ray diffraction. Solvent-etching and fracturing were utilized for probing the interior lamellar textures of the blend samples. Detail interior lamellar orientations in bulk film of PHBV three-dimensional ring-banded spherulites were revealed. SEM and micro-beam X-ray diffraction results suggest that the PHBV lamellar orientation gradually change along the radial growth direction with right-handed rotation sense. The blending effect in band pattern (width and regularity) of PHBV/PVAc blend was also discussed. Subsequently, the spherulitic morphology of poly(ethylene adipate) (PEA), poly(1,4-butylene adipate) (PBA), poly(1,6-hexamethylene adipate) (PHA), and poly(epsilon-caprolactone) (PCL) thin films on different glass substrates were investigated by using POM and AFM. Polyester films were prepared by spin coating technique onto unmodified and two types of polymethacrylate (poly(benzyl methacrylate), PBzMA and poly(methyl methacrylate), PMMA) grafted glass slides. Melt-crystallized PEA, PBA, and PHA thin films on modified substrates exhibited the same spherulitic morphologies with their film samples on unmodified glass slides. However, two types of newfound spherulitic morphologies (negative- and non-birefringence mixed pattern and positive-type water lettuce-like pattern) were observed in PCL film samples. AFM observation shows that the negative-type birefringence crystals of PCL are composed of edge-on lamellae and the positive-type or non-birefringence crystals are composed of tilted flat-on lamellae (forward or backward along their radial direction). Furthermore, the melting and crystallization behaviors of PCL in PCL/PBzMA and PCL/PMMA blends have investigated in this study by using differential scanning calorimetry (DSC). DSC results suggest that the crystallinity of PCL on polymethacrylate grafted glass slides can be maintained at nearly 50% still.
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16

Zethof, Jeroen H. T. "The role of extracellular polymeric substances from microbes in soil aggregate stabilization in semiarid grasslands." 2003. https://tud.qucosa.de/id/qucosa%3A75438.

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Abstract:
Soil structural stability plays a pivotal role in landscape preservation when a protective vegetation cover is lacking. For example, under semiarid climates seasonal rainfall cannot sustain a full vegetation cover, but still causes soil erosion. With the loss of (fertile) soil material, ecosystem productivity reduces and less C can be stored. In natural semiarid systems, soil erosion is a spatially heterogeneous process, whereby local highly erodible spots are alternated by improved soil structure under the sparse canopy cover, creating a very heterogeneous landscape. Although the physical protection by the plant canopy is well understood, the potential influence of soil archaea and bacteria on soil structural stability in relation to plants and parent material is less well known. Mainly from studies under controlled conditions, we know that certain archaeal and bacterial species have the ability to produce extracellular polymeric substances (EPS), forming an extracellular matrix. As the formed matrix connects soil particles, EPS seem to have the potential of playing a substantial role in soil aggregation, thereby controlling soil erodibility. Little is known of this gluing process by EPS and its importance under natural conditions as most evidence is derived from controlled conditions in the laboratory. This dissertation aims to unravel the role of EPS from soil archaea and bacteria in soil aggregate stabilization in semiarid grasslands by considering the potential role of plant species and parent material in this process. The sparse vegetation in semiarid grasslands provide a useful gradient in soil organic C contents to study these processes. Improved conditions for soil microbes producing EPS can be found at the root surface, while the bare canopy interspaces lack in C/resources. Two sites were selected in southeast Spain, mainly differing in graphitic C, inorganic C and nitrogen contents. On both sites, soil adjacent to the widely occurring Anthyllis cytisoides legumes shrubs and Macrochloa tenacissima grass tussocks were sampled during two campaigns. The first sampling campaign in April 2017 focused on the top soil, whereby a distance gradient from the plant stem to the bare intercanopy area was sampled. The second sampling campaign in April 2018 focused more on the effect of plant roots on soil archaeal and bacterial communities by including the rhizosphere. As the parent material of the Rambla Honda site, i.e. one of the study sites, contains a substantial amount of graphitic C, several methods were tested to quantify the different types of C in these soils to understand their role in shaping EPS contents. Furthermore, the quantification of graphitic C contents opened the possibility to study a potential interaction between graphite minerals and microbes. Although graphitic C contents explained part of the variances in microbial community, no direct link with EPS-saccharide contents was found. EPS contents were relative high in the rhizosphere, most notable at the legumes shrub Anthyllis cytisoides, and were linked to the enrichment of N-fixing bacteria. However, outside the root influenced soil, EPS contents were still substantially high, whereby the abundance of microbial species, previously associated to biofilm formation in other environments, indicated that EPS synthesis is not only restricted to the rhizosphere. Soil aggregation was linked to EPS-saccharide contents, whereby two mechanisms were hypothesized. Firstly, the strong link between soil wettability and EPS-saccharide content in the soil of the carbonate poor Rambla Honda site, indicated that aggregates become stabilized by hydrophobic bonds created by the EPS. Secondly, results from the carbonate rich Alboloduy site indicates that EPS has a facilitating role in creating stable aggregates by precipitating carbonates on the EPS structure. This likely lead to a higher soil structural stability, as carbonate bindings are more stable when prolonged drought reduces soil biological activity and thereby EPS contents. Overall, EPS play a substantial role in soil aggregate stabilization in semiarid grasslands, whereby EPS contents were increased by legume plants, by means of enriching EPS producing bacteria.
Die Stabilität der Bodenstruktur spielt eine entscheidende Rolle in der Erhaltung der Landschaft, insbesondere wenn keine schützende Vegetationsbedeckung vorhanden ist. So ist beispielsweise unter semiariden Klimabedingungen wegen der Saisonalität der Niederschläge keine vollständige Vegetationsbedeckung vorhanden, was Bodenerosion verursacht. Durch den Verlust von (fruchtbarem) Bodenmaterial verringert sich die Produktivität des Ökosystems. Dadurch kann weniger Kohlenstoff (C) im Boden gespeichert werden. In natürlichen semiariden Systemen ist die Bodenerosion ein räumlich heterogener Prozess, bei dem sich stark erosionsanfällige Stellen mit solchen Bereichen abwechseln, welche durch günstige Bodenstruktur unter der spärlichen Pflanzendecke gekennzeichnet sind. Hierdurch entsteht eine sehr heterogene Landschaft. Während zum physikalischen Schutz durch Vegetationsüberschirmung viele Erkenntnisse vorliegen, ist über den möglichen Einfluss von Archaeen und Bakterien auf die strukturelle Stabilität des Bodens in Bezug auf Pflanzen und Ausgangsmaterial weit weniger bekannt. Hauptsächlich aus Studien unter kontrollierten Bedingungen wissen wir, dass bestimmte Archaen- und Bakterienarten die Fähigkeit besitzen, extrazelluläre polymere Substanzen (EPS) zu produzieren, die eine extrazelluläre Matrix bilden. Da die gebildete Matrix Bodenpartikel verbindet, scheint EPS das Potenzial für eine maßgebliche Beeinflussung der Bodenaggregation zu haben und dadurch die Erosionsanfälligkeit zu steuern. Über solche Klebemechanismen von EPS und deren Bedeutung unter natürlichen Bedingungen ist aber wenig bekannt; die meisten Hinweise stammen aus kontrollierten Bedingungen im Labor. Diese Dissertation zielt darauf ab, die Bedeutung von EPS von Archaeen und Bakterien hinsichtlich der Stabilisierung von Bodenaggregaten in semiariden Graslandschaften unter Berücksichtigung der möglichen Rolle von Pflanzenarten und Ausgangsmaterial in diesem Prozess aufzuklären. Zur Untersuchung solcher Prozesse bietet die spärliche Vegetation in semiariden Graslandschaften einen zweckdienlichen Gradienten bezüglich des Gehalt an organischem C im Boden. Günstige Bedingungen für EPS-produzierende Bodenmikroorganiosmen sind an der Wurzeloberfläche zu finden, während dem unbedeckten Boden zwischen Stellen ohne Pflanzenbedeckung C / Ressourcen fehlen. Es wurden zwei Standorte in Südostspanien ausgewählt, die sich hauptsächlich in den Gehalten an graphitischem C, anorganischem C und Stickstoff unterscheiden. An beiden Standorten wurden im Rahmen von zwei Feldkampagnen Böden in unmittelbarer Nähe zu der weit verbreiteten Leguminosenart Anthyllis cytisoides-Hülsenfrüchten und Grasbüscheln von Macrochloa tenacissima beprobt. Die erste Probenahmekampagne im April 2017 konzentrierte sich auf den obersten Boden, wobei ein Abstandsgradient vom Pflanzenspross zum unbedeckten Boden zwischen der Pflanzendecke beprobt wurde. Die zweite Probenahmekampagne im April 2018 konzentrierte sich mehr auf die Wirkung von Pflanzenwurzeln auf Archaeen- und Bakteriengemeinschaften durch Beprobung der Rhizosphäre. Am Rambla Honda-Standort enthält das Ausgangsmaterial eine erhebliche Menge an graphitischem C. Deshalb wurden verschiedene Methoden getestet, um die verschiedenen Arten von C in diesen Böden zu quantifizieren und ihre Rolle bei der Gestaltung des EPS-Gehalts zu verstehen. Darüber hinaus eröffnete die Quantifizierung des graphitischen C-Gehalts die Möglichkeit, die Wechselwirkung zwischen Graphitmineralen und Mikroorganismen zu untersuchen. Obwohl der Gehalt an graphitischem C einen Teil der Varianzen in der mikrobiellen Gemeinschaft erklärte, wurde kein direkter Zusammenhang mit dem EPS-Saccharidgehalt gefunden. Die EPS-Gehalte waren in der Rhizosphäre relativ hoch - am deutlichsten bei der Leguminosenart Anthyllis cytisoides - und mit der Anreicherung von N-fixierenden Bakterien verbunden. Außerhalb des von der Wurzel beeinflussten Bodens war der EPS-Gehalt jedoch immer noch deutlich erhöht. Dabei wies die Häufigkeit von Mikroorganismenarten, die zuvor mit der Bildung von Biofilmen in anderen Umgebungen in Verbindung gebracht wurden, darauf hin, dass die EPS-Synthese nicht nur auf die Rhizosphäre beschränkt ist. Die Bodenaggregation zeigte eine Verbindung mit dem EPS-Saccharidgehalt auf, wobei zwei Mechanismen angenommen wurden: Erstens wies der starke Zusammenhang zwischen der Bodenbenetzbarkeit und dem EPS-Saccharidgehalt im Boden des karbonatarmen Rambla Honda-Standorts auf eine Aggregatstabilisierung durch EPS-erzeugte hydrophobe Bindungen hin. Zweitens zeigen die Ergebnisse des Standorts Alboloduy-Standorts mit karbonatreichem Boden, dass EPS eine unterstützende Funktion bei der Erzeugung stabiler Aggregate besitzt, indem Karbonate auf der EPS-Struktur ausgefällt werden. Dies führt wahrscheinlich zu einer höheren Stabilität der Bodenstruktur, da Karbonatbindungen stabiler sind, wenn eine längere Trockenheit zu einer Verringerung der biologischen Aktivität im Boden und damit des EPS-Gehalts führt. Insgesamt spielt EPS eine wesentliche Rolle bei der Stabilisierung von Bodenaggregaten in semiariden Graslandschaften, wobei der EPS-Gehalt durch Leguminsosen, mittels Anreicherung von EPS-produzierenden Bakterien, erhöht wurde.
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17

Zethof, Jeroen Hendricus Theodoor. "The role of extracellular polymeric substances from microbes in soil aggregate stabilization in semiarid grasslands." 2021. https://tud.qucosa.de/id/qucosa%3A75438.

Full text
Abstract:
Soil structural stability plays a pivotal role in landscape preservation when a protective vegetation cover is lacking. For example, under semiarid climates seasonal rainfall cannot sustain a full vegetation cover, but still causes soil erosion. With the loss of (fertile) soil material, ecosystem productivity reduces and less C can be stored. In natural semiarid systems, soil erosion is a spatially heterogeneous process, whereby local highly erodible spots are alternated by improved soil structure under the sparse canopy cover, creating a very heterogeneous landscape. Although the physical protection by the plant canopy is well understood, the potential influence of soil archaea and bacteria on soil structural stability in relation to plants and parent material is less well known. Mainly from studies under controlled conditions, we know that certain archaeal and bacterial species have the ability to produce extracellular polymeric substances (EPS), forming an extracellular matrix. As the formed matrix connects soil particles, EPS seem to have the potential of playing a substantial role in soil aggregation, thereby controlling soil erodibility. Little is known of this gluing process by EPS and its importance under natural conditions as most evidence is derived from controlled conditions in the laboratory. This dissertation aims to unravel the role of EPS from soil archaea and bacteria in soil aggregate stabilization in semiarid grasslands by considering the potential role of plant species and parent material in this process. The sparse vegetation in semiarid grasslands provide a useful gradient in soil organic C contents to study these processes. Improved conditions for soil microbes producing EPS can be found at the root surface, while the bare canopy interspaces lack in C/resources. Two sites were selected in southeast Spain, mainly differing in graphitic C, inorganic C and nitrogen contents. On both sites, soil adjacent to the widely occurring Anthyllis cytisoides legumes shrubs and Macrochloa tenacissima grass tussocks were sampled during two campaigns. The first sampling campaign in April 2017 focused on the top soil, whereby a distance gradient from the plant stem to the bare intercanopy area was sampled. The second sampling campaign in April 2018 focused more on the effect of plant roots on soil archaeal and bacterial communities by including the rhizosphere. As the parent material of the Rambla Honda site, i.e. one of the study sites, contains a substantial amount of graphitic C, several methods were tested to quantify the different types of C in these soils to understand their role in shaping EPS contents. Furthermore, the quantification of graphitic C contents opened the possibility to study a potential interaction between graphite minerals and microbes. Although graphitic C contents explained part of the variances in microbial community, no direct link with EPS-saccharide contents was found. EPS contents were relative high in the rhizosphere, most notable at the legumes shrub Anthyllis cytisoides, and were linked to the enrichment of N-fixing bacteria. However, outside the root influenced soil, EPS contents were still substantially high, whereby the abundance of microbial species, previously associated to biofilm formation in other environments, indicated that EPS synthesis is not only restricted to the rhizosphere. Soil aggregation was linked to EPS-saccharide contents, whereby two mechanisms were hypothesized. Firstly, the strong link between soil wettability and EPS-saccharide content in the soil of the carbonate poor Rambla Honda site, indicated that aggregates become stabilized by hydrophobic bonds created by the EPS. Secondly, results from the carbonate rich Alboloduy site indicates that EPS has a facilitating role in creating stable aggregates by precipitating carbonates on the EPS structure. This likely lead to a higher soil structural stability, as carbonate bindings are more stable when prolonged drought reduces soil biological activity and thereby EPS contents. Overall, EPS play a substantial role in soil aggregate stabilization in semiarid grasslands, whereby EPS contents were increased by legume plants, by means of enriching EPS producing bacteria.
Die Stabilität der Bodenstruktur spielt eine entscheidende Rolle in der Erhaltung der Landschaft, insbesondere wenn keine schützende Vegetationsbedeckung vorhanden ist. So ist beispielsweise unter semiariden Klimabedingungen wegen der Saisonalität der Niederschläge keine vollständige Vegetationsbedeckung vorhanden, was Bodenerosion verursacht. Durch den Verlust von (fruchtbarem) Bodenmaterial verringert sich die Produktivität des Ökosystems. Dadurch kann weniger Kohlenstoff (C) im Boden gespeichert werden. In natürlichen semiariden Systemen ist die Bodenerosion ein räumlich heterogener Prozess, bei dem sich stark erosionsanfällige Stellen mit solchen Bereichen abwechseln, welche durch günstige Bodenstruktur unter der spärlichen Pflanzendecke gekennzeichnet sind. Hierdurch entsteht eine sehr heterogene Landschaft. Während zum physikalischen Schutz durch Vegetationsüberschirmung viele Erkenntnisse vorliegen, ist über den möglichen Einfluss von Archaeen und Bakterien auf die strukturelle Stabilität des Bodens in Bezug auf Pflanzen und Ausgangsmaterial weit weniger bekannt. Hauptsächlich aus Studien unter kontrollierten Bedingungen wissen wir, dass bestimmte Archaen- und Bakterienarten die Fähigkeit besitzen, extrazelluläre polymere Substanzen (EPS) zu produzieren, die eine extrazelluläre Matrix bilden. Da die gebildete Matrix Bodenpartikel verbindet, scheint EPS das Potenzial für eine maßgebliche Beeinflussung der Bodenaggregation zu haben und dadurch die Erosionsanfälligkeit zu steuern. Über solche Klebemechanismen von EPS und deren Bedeutung unter natürlichen Bedingungen ist aber wenig bekannt; die meisten Hinweise stammen aus kontrollierten Bedingungen im Labor. Diese Dissertation zielt darauf ab, die Bedeutung von EPS von Archaeen und Bakterien hinsichtlich der Stabilisierung von Bodenaggregaten in semiariden Graslandschaften unter Berücksichtigung der möglichen Rolle von Pflanzenarten und Ausgangsmaterial in diesem Prozess aufzuklären. Zur Untersuchung solcher Prozesse bietet die spärliche Vegetation in semiariden Graslandschaften einen zweckdienlichen Gradienten bezüglich des Gehalt an organischem C im Boden. Günstige Bedingungen für EPS-produzierende Bodenmikroorganiosmen sind an der Wurzeloberfläche zu finden, während dem unbedeckten Boden zwischen Stellen ohne Pflanzenbedeckung C / Ressourcen fehlen. Es wurden zwei Standorte in Südostspanien ausgewählt, die sich hauptsächlich in den Gehalten an graphitischem C, anorganischem C und Stickstoff unterscheiden. An beiden Standorten wurden im Rahmen von zwei Feldkampagnen Böden in unmittelbarer Nähe zu der weit verbreiteten Leguminosenart Anthyllis cytisoides-Hülsenfrüchten und Grasbüscheln von Macrochloa tenacissima beprobt. Die erste Probenahmekampagne im April 2017 konzentrierte sich auf den obersten Boden, wobei ein Abstandsgradient vom Pflanzenspross zum unbedeckten Boden zwischen der Pflanzendecke beprobt wurde. Die zweite Probenahmekampagne im April 2018 konzentrierte sich mehr auf die Wirkung von Pflanzenwurzeln auf Archaeen- und Bakteriengemeinschaften durch Beprobung der Rhizosphäre. Am Rambla Honda-Standort enthält das Ausgangsmaterial eine erhebliche Menge an graphitischem C. Deshalb wurden verschiedene Methoden getestet, um die verschiedenen Arten von C in diesen Böden zu quantifizieren und ihre Rolle bei der Gestaltung des EPS-Gehalts zu verstehen. Darüber hinaus eröffnete die Quantifizierung des graphitischen C-Gehalts die Möglichkeit, die Wechselwirkung zwischen Graphitmineralen und Mikroorganismen zu untersuchen. Obwohl der Gehalt an graphitischem C einen Teil der Varianzen in der mikrobiellen Gemeinschaft erklärte, wurde kein direkter Zusammenhang mit dem EPS-Saccharidgehalt gefunden. Die EPS-Gehalte waren in der Rhizosphäre relativ hoch - am deutlichsten bei der Leguminosenart Anthyllis cytisoides - und mit der Anreicherung von N-fixierenden Bakterien verbunden. Außerhalb des von der Wurzel beeinflussten Bodens war der EPS-Gehalt jedoch immer noch deutlich erhöht. Dabei wies die Häufigkeit von Mikroorganismenarten, die zuvor mit der Bildung von Biofilmen in anderen Umgebungen in Verbindung gebracht wurden, darauf hin, dass die EPS-Synthese nicht nur auf die Rhizosphäre beschränkt ist. Die Bodenaggregation zeigte eine Verbindung mit dem EPS-Saccharidgehalt auf, wobei zwei Mechanismen angenommen wurden: Erstens wies der starke Zusammenhang zwischen der Bodenbenetzbarkeit und dem EPS-Saccharidgehalt im Boden des karbonatarmen Rambla Honda-Standorts auf eine Aggregatstabilisierung durch EPS-erzeugte hydrophobe Bindungen hin. Zweitens zeigen die Ergebnisse des Standorts Alboloduy-Standorts mit karbonatreichem Boden, dass EPS eine unterstützende Funktion bei der Erzeugung stabiler Aggregate besitzt, indem Karbonate auf der EPS-Struktur ausgefällt werden. Dies führt wahrscheinlich zu einer höheren Stabilität der Bodenstruktur, da Karbonatbindungen stabiler sind, wenn eine längere Trockenheit zu einer Verringerung der biologischen Aktivität im Boden und damit des EPS-Gehalts führt. Insgesamt spielt EPS eine wesentliche Rolle bei der Stabilisierung von Bodenaggregaten in semiariden Graslandschaften, wobei der EPS-Gehalt durch Leguminsosen, mittels Anreicherung von EPS-produzierenden Bakterien, erhöht wurde.
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