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Brice, Kylie L., Pankaj Trivedi, Thomas C. Jeffries, Michaela D. J. Blyton, Christopher Mitchell, Brajesh K. Singh, and Ben D. Moore. "The Koala (Phascolarctos cinereus) faecal microbiome differs with diet in a wild population." PeerJ 7 (April 1, 2019): e6534. http://dx.doi.org/10.7717/peerj.6534.
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BackgroundThe diet of the koala (Phascolarctos cinereus) is comprised almost exclusively of foliage from the genusEucalyptus(family Myrtaceae).Eucalyptusproduces a wide variety of potentially toxic plant secondary metabolites which have evolved as chemical defences against herbivory. The koala is classified as an obligate dietary specialist, and although dietary specialisation is rare in mammalian herbivores, it has been found elsewhere to promote a highly-conserved but low-diversity gut microbiome. The gut microbes of dietary specialists have been found sometimes to enhance tolerance of dietary PSMs, facilitating competition-free access to food. Although the koala and its gut microbes have evolved together to utilise a low nutrient, potentially toxic diet, their gut microbiome has not previously been assessed in conjunction with diet quality. Thus, linking the two may provide new insights in to the ability of the koala to extract nutrients and detoxify their potentially toxic diet.MethodThe 16S rRNA gene was used to characterise the composition and diversity of faecal bacterial communities from a wild koala population (n = 32) comprising individuals that predominately eat either one of two different food species, one the strongly preferred and relatively nutritious speciesEucalyptus viminalis, the other comprising the less preferred and less digestible speciesEucalyptus obliqua.ResultsAlpha diversity indices indicated consistently and significantly lower diversity and richness in koalas eatingE. viminalis. Assessment of beta diversity using both weighted and unweighted UniFrac matrices indicated that diet was a strong driver of both microbial community structure, and of microbial presence/absence across the combined koala population and when assessed independently. Further, principal coordinates analysis based on both the weighted and unweighted UniFrac matrices for the combined and separated populations, also revealed a separation linked to diet. During our analysis of the OTU tables we also detected a strong association between microbial community composition and host diet. We found that the phyla Bacteroidetes and Firmicutes were co-dominant in all faecal microbiomes, with Cyanobacteria also co-dominant in some individuals; however, theE. viminalisdiet produced communities dominated by the generaParabacteroidesand/orBacteroides, whereas theE. obliqua-associated diets were dominated by unidentified genera from the family Ruminococcaceae.DiscussionWe show that diet differences, even those caused by differential consumption of the foliage of two species from the same plant genus, can profoundly affect the gut microbiome of a specialist folivorous mammal, even amongst individuals in the same population. We identify key microbiota associated with each diet type and predict functions within the microbial community based on 80 previously identifiedParabacteroidesand Ruminococcaceae genomes.
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Dakskobler, Igor, Andrej Martinčič, and Daniel Rojšek. "Phytosociological Analysis Of Communities With Adiantum Capillusveneris In The Foothills Of The Julian Alps (Western Slovenia)." Hacquetia 13, no. 2 (December 1, 2014): 235–58. http://dx.doi.org/10.2478/hacq-2014-0016.
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Abstract We conducted a phytosociological study of the communities hosting the rare and endangered fern Adiantum capillus-veneris in the foothills of the Julian Alps, in Karst and in Istria. Based on a comparison with similar communities elsewhere in the southern Alps (northern Italy) we classified most of the recorded stands into the syntaxa Eucladio-Adiantetum eucladietosum and -cratoneuretosum commutati. Releves from the southern Julian Alps, located in comparatively slightly colder and moister local climate and the dolomite bedrock are classified into the new subassociation -hymenostylietosum recurvirostri subass. nova. Stands with the abundant occurrence of the liverwort Conocephalum conicum, are classified in to the new subassociation -conocephaletosum conici subass. nova. Stands in conglomerate rock shelters along the Soča at Solkan are classified into the new association Phyteumato columnae-Adiantetum ass. nova, a community of transitional character between the classes Adiantetea capilli-veneris and Asplenietea trichomanis.
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Babcock, Christopher A., and Craig R. Ely. "Classification of vegetation communities in which geese rear broods on the Yukon – Kuskokwim delta, Alaska." Canadian Journal of Botany 72, no. 9 (September 1, 1994): 1294–301. http://dx.doi.org/10.1139/b94-158.
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Plant communities are described from an area on the Yukon – Kuskokwim (Y-K) delta of Alaska that is used extensively for brood rearing by three species of geese. Earlier studies identified plant species important as food for young geese, but few studies describe or quantify plant communities. We classified species presence or absence information from over 700 quadrats using a two-way indicator species analysis (TWINSPAN) and then tested for agreement of signatures on colour infrared air photos with the identified communities. Sedges were found to dominate all but the wettest and driest communities. Most of the brood-rearing area was covered by Carex ramenskii and Carex rariflora meadows, ponds, Carex mackenziei-dominated pond margins, and C. ramenskii and grass levee meadows. Our interpretation of airphotos accurately predicted vegetation community classes, which will facilitate future studies of habitat selection by geese during the time they are rearing young. The TWINSPAN classification was comparable to classifications of studies conducted elsewhere on the Y-K delta. The interpretation of air photos will enable the identification and evaluation of wetland vegetation complexes and potential goose brood-rearing areas away from our study site. Key words: air-photo interpretation, Alaska, plant communities, salt marsh, Yukon – Kuskokwim delta.
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Sunpapao, Anurag, Nakarin Suwannarach, Jaturong Kumla, Reajina Dumhai, Kanamon Riangwong, Sunisa Sanguansub, Samart Wanchana, and Siwaret Arikit. "Morphological and Molecular Identification of Plant Pathogenic Fungi Associated with Dirty Panicle Disease in Coconuts (Cocos nucifera) in Thailand." Journal of Fungi 8, no. 4 (March 23, 2022): 335. http://dx.doi.org/10.3390/jof8040335.
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Dirty panicle disease in coconuts (Cocos nucifera) was first observed in the KU-BEDO Coconut BioBank, Nakhon Pathom province, Thailand. The occurrence of the disease covers more than 30% of the total coconut plantation area. The symptoms include small brown to dark brown spots and discoloration of male flowers. Herein, three fungal strains were isolated from infected samples. Based on the morphological characteristics the fungal isolates, they were classified into two genera, namely, Alternaria (Al01) and Fusarium (FUO01 and FUP01). DNA sequences of internal transcribed spacer (ITS), glyceraldehyde 3-phosphate dehydrogenase (GAPDH), translation elongation factor 1-α (tef1-α), and RNA polymerase II second largest subunit (rpb2) revealed Al01 as Alternaria burnsii, whereas DNA sequences of ITS, rpb2, and tef1-α identified FUO01 and FUP01 as Fusarium clavum and F. tricinctum, respectively. A pathogenicity test by the agar plug method demonstrated that these pathogens cause dirty panicle disease similar to that observed in natural infections. To the best of our knowledge, this is the first report on the novel dirty panicle disease in coconuts in Thailand or elsewhere, demonstrating that it is associated with the plant pathogenic fungi A. burnsii, F. clavum, and F. tricinctum.
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Jeffries, Peter. "Biology and ecology of mycoparasitism." Canadian Journal of Botany 73, S1 (December 31, 1995): 1284–90. http://dx.doi.org/10.1139/b95-389.
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The term mycoparasitism applies strictly to those relationships in which one living fungus acts as a nutrient source for another, but fungicolous relationships may also be included in which nutrient exchange has not been shown. Fungicolous fungi have a constant but indeterminate association with another fungus, and it can be difficult to demonstrate a true parasitic relationship. Mycoparasitic relationships can be necrotrophic or biotrophic, and can be classified on the basis of the host–parasite interface as contact necrotrophs, invasive necrotrophs, haustorial biotrophs, intracellular biotrophs, or fusion biotrophs depending on the intimacy of the relationship. In natural ecosystems, it is proposed that mycoparasitic relationships play an important role in the development of fungal communities. Two specific examples have been chosen to illustrate the general principles of mycoparasitism: the necrotrophic invasion of spores of arbuscular mycorrhizal fungi and the biotrophic invasion of mucoralean hosts by haustorial mycoparasites. Key words: mycoparasitism, fungicolous fungi, arbuscular mycorrhizal fungi, fungal ecology.
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Dakskobler, Igor, and Jernej Peljhan. "Viola Pyrenaica Ramond Ex Dc in the Northern Part of the Dinaric Mountains (The Plateaus of Trnovski Gozd and Nanos, Slovenia)." Hacquetia 6, no. 2 (December 1, 2007): 143–69. http://dx.doi.org/10.2478/v10028-007-0009-5.
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Viola PyrenaicaRamond Ex Dc in the Northern Part of the Dinaric Mountains (The Plateaus of Trnovski Gozd and Nanos, Slovenia)The article describes new localities of a south-European montane speciesViola pyrenaicain the Julian Alps and in the Trnovski gozd and Nanos plateaus (the northern part of the Dinaric mountains). It has been established that in the localities known so far in Slovenia, the species grows on similar sites as elsewhere in the Alps and other mountain ranges of the Balkan Peninsula, above all on overgrown screes, stony grasslands, on forest edges, in light forests on stony ground and in tall herb communities on calcareous bedrock in the submontane, montane and subalpine belt (450 to 1600 m a.s.l.). The floristic composition of the communities in which it grows is presented in four tables. On the Trnovski gozd plateau it was found in various successional stages of abandoned pastures or grasslands of the associationGenisto sericeae-Seslerietum kalnikensisand in open coppice stands of hop hornbeam and flowering ash, which are classified into the associationSeslerio autumnalis-Ostryetum carpinifoliae.
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Kegode, G. O., and S. J. Darbyshire. "The Biology of Canadian Weeds. 152.Artemisia biennisWilld." Canadian Journal of Plant Science 93, no. 4 (July 2013): 643–58. http://dx.doi.org/10.4141/cjps2012-328.
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Kegode, G. O. and Darbyshire, S. J. 2013. The Biology of Canadian Weeds. 152. Artemisia biennis Willd. Can. J. Plant Sci. 93: 643–658. Artemisia biennis Willd. (biennial wormwood, armoise bisannuelle) is an annual or biennial species native to western North America. Closely related species occur in Eurasia and South America which are sometimes considered conspecific. Spreading elsewhere in North America occurred along transportation corridors soon after European settlement and it has since been introduced to other parts of the world. As an economically important weed its impact appears to be increasing, possibly due in part to reduced tillage practices. The most significantly affected regions are the Prairie Provinces of Canada and the northern Great Plains in the United States. Many cereal, oilseed, pulse, vegetable and forage crops are affected where it can reduce yields at relatively low densities. A wide range of soil and moisture conditions are tolerated and it can form dense populations in disturbed habitats where its competitive ability is enhanced by prolific seed production, indeterminate seedling emergence and allelopathic effects. Although tolerant of a number of herbicides in different classes, good control can be achieved through careful timing and split application strategies.
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Bindewald, A., S. Miocic, A. Wedler, and J. Bauhus. "Forest inventory-based assessments of the invasion risk of Pseudotsuga menziesii (Mirb.) Franco and Quercus rubra L. in Germany." European Journal of Forest Research 140, no. 4 (March 26, 2021): 883–99. http://dx.doi.org/10.1007/s10342-021-01373-0.
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AbstractIn Europe, some non-native tree species (NNT) are classified as invasive because they have spread into semi-natural habitats. Yet, available risk assessment protocols are often based on a few limited case studies with unknown representativeness and uncertain data quality. This is particularly problematic when negative impacts of NNT are confined to particular ecosystems or processes, whilst providing valuable ecosystem services elsewhere. Here, we filled this knowledge gap and assessed invasion risks of two controversially discussed NNT in Germany (Quercus rubra L., Pseudotsuga menziesii (Mirb.) Franco) for broad forest types using large scale inventory data. For this purpose, establishment success of natural regeneration was quantified in terms of cover and height classes. The current extent of spread into protected forest habitats was investigated in south-west Germany using regional data. Establishment was most successful at sites where the NNT are abundant in the canopy and where sufficient light is available in the understory. Natural regeneration of both NNT was observed in 0.3% of the total area of protected habitats. In forest habitats with sufficient light in the understory and competitively inferior tree species, there is a risk that Douglas fir and red oak cause changes in species composition in the absence of management interventions. The installation of buffer zones and regular removal of unwanted regeneration could minimize such risks for protected areas. Our study showed that forest inventories can provide valuable data for comparing the establishment risk of NNT amongst ecosystem types, regions or jurisdictions. This information can be improved by recording the abundance and developmental stage of widespread NNT, particularly in semi-natural ecosystems.
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McNulty, A. K., and M. J. Saunders. "Purification and immunological detection of pea nuclear intermediate filaments: evidence for plant nuclear lamins." Journal of Cell Science 103, no. 2 (October 1, 1992): 407–14. http://dx.doi.org/10.1242/jcs.103.2.407.
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A major structural component of the inner face of the nuclear envelope in vertebrates and invertebrates is the nuclear lamina, an array of 1–3 extrinsic membrane proteins, lamins A, B and C. These proteins are highly homologous to intermediate filaments and are classified as type V. We report the first purification, antigenic characterization and immunocytochemical localization of putative plant lamin proteins from pea nuclei. We conclude that plant cells contain this ancestral class of intermediate filaments in their nuclei and that regulation of nuclear envelope assembly/disassembly and mitosis in plants may be similar to that in animal cells.
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Suriyanti, S. N. P., and G. Usup. "Morphology and molecular phylogeny of the marine diatom Nitzschia dentatum sp. nov. and N. johorensis sp. nov. (Bacillariophyceae) from Malaysia." Bangladesh Journal of Plant Taxonomy 24, no. 2 (December 30, 2017): 183–96. http://dx.doi.org/10.3329/bjpt.v24i2.35114.
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The marine diatom Nitzschia dentatum sp. nov. isolated from seawater samples of Kudat and N. johorensis sp. nov. isolated from beach sand samples of Sibu Island, Malaysia, have been described in this paper. Morphological identification, molecular phylogeny and toxin analyses were executed on the pure non-axenic algal cultures designated as KD89 and PS8, respectively. The main distinguishing feature of N. dentatum sp. nov. compared to other species is the jaggedcingulum structure which is only unique to this species. Meanwhile, N. johorensis sp. nov.is strongly characterized by the ‘hantzschioid’and ‘nitzschioid’ symmetry dimorphisms; a common diagnostic feature but rarely described in other Nitzschia species. Identification of both strains was made based on the frustule diagnostic features and verified using the partial large ribosomal subunit DNA sequences. The results have confirmed that these two speciesare independent entities and novel species that have not been documented elsewhere. A notable finding from the Maximum Likelihood (ML), Maximum Parsimony (MP) and Bayesian Index (BI) analyses have also revealed that Nitzschia species that have indentation in the middle of valves have been consistently grouped as same clade with high bootstrap values. The extracts of both species did not show detectable amount of domoicacid and have therefore, been classified as non-toxic. This discovery contributes to the documentation of Nitzschia species worldwide.Bangladesh J. Plant Taxon. 24(2): 183–196.
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Parrotta, Luigi, Umesh Kumar Tanwar, Iris Aloisi, Ewa Sobieszczuk-Nowicka, Magdalena Arasimowicz-Jelonek, and Stefano Del Duca. "Plant Transglutaminases: New Insights in Biochemistry, Genetics, and Physiology." Cells 11, no. 9 (May 3, 2022): 1529. http://dx.doi.org/10.3390/cells11091529.
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Transglutaminases (TGases) are calcium-dependent enzymes that catalyse an acyl-transfer reaction between primary amino groups and protein-bound Gln residues. They are widely distributed in nature, being found in vertebrates, invertebrates, microorganisms, and plants. TGases and their functionality have been less studied in plants than humans and animals. TGases are distributed in all plant organs, such as leaves, tubers, roots, flowers, buds, pollen, and various cell compartments, including chloroplasts, the cytoplasm, and the cell wall. Recent molecular, physiological, and biochemical evidence pointing to the role of TGases in plant biology and the mechanisms in which they are involved allows us to consider their role in processes such as photosynthesis, plant fertilisation, responses to biotic and abiotic stresses, and leaf senescence. In the present paper, an in-depth description of the biochemical characteristics and a bioinformatics comparison of plant TGases is provided. We also present the phylogenetic relationship, gene structure, and sequence alignment of TGase proteins in various plant species, not described elsewhere. Currently, our knowledge of these proteins in plants is still insufficient. Further research with the aim of identifying and describing the regulatory components of these enzymes and the processes regulated by them is needed.
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Davis, R. E., E. L. Dally, and R. H. Converse. "Molecular Identification of a Phytoplasma Associated with Witches'-Broom Disease of Black Raspberry in Oregon and Its Classification in Group 16SrIII, New Subgroup Q." Plant Disease 85, no. 10 (October 2001): 1121. http://dx.doi.org/10.1094/pdis.2001.85.10.1121a.
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Plants of Rubus occidentalis (black raspberry) ‘Munger’ exhibiting symptoms of black raspberry witches'-broom (BRWB) disease were observed in commercial fields in Oregon (1). Symptoms were often severe, leading to death of infected plants, and a phytoplasma (mycoplasmalike bodies) was observed in ultrathin sections of diseased plants (1). In the current work, the association of phytoplasma with BRWB was assessed using the polymerase chain reaction (PCR) for specific amplification of phytoplasmal rDNA. DNA template for use in the PCR was extracted from plants as described elsewhere (2). Phytoplasmal 16S rDNA was amplified from diseased black raspberry plants in PCR primed by primer pair P1/P7 and reamplified in nested PCR primed by primer pair R16F2n/R2 (F2n/R2) by a method described previously (2). These results indicated the presence of a phytoplasma, designated BRWB phytoplasma, in the diseased plants. Identification of BRWB phytoplasma was accomplished by restriction fragment length polymorphism (RFLP) analysis of DNA amplified in PCR primed by F2n/R2. Phytoplasma classification was done according to the system of Lee et al. (3). On the basis of collective RFLP patterns of the amplified 16S rDNA, the BRWB phytoplasma was classified as a member of group 16SrIII (group III, X-disease phytoplasma group). The HhaI RFLP pattern of BRWB 16S rDNA differed from that of its close relative, clover yellow edge (CYE) phytoplasma. The RsaI RFLP pattern of BRWB rDNA differed from that of rDNA from all phytoplasmas previously described in group III. Based on these results, BRWB phytoplasma was classified in a new subgroup, designated subgroup Q (III-Q) within group III. The 1.8 kbp DNA product of PCR primed by primer pair P1/P7 was cloned and its nucleotide sequence determined. The sequence was deposited in GenBank under Accession no. AF302841. Results from putative restriction site analysis of the cloned and sequenced rDNA were in excellent agreement with the results from enzymatic RFLP analysis of uncloned rDNA amplified from BRWB diseased black raspberry. Sequence similarity between the 1.8 kbp rDNA of BRWB phytoplasma and that of CYE phytoplasma was 99.4%. The nucleotide sequence data support the conclusion that the BRWB phytoplasma is related to, but is distinct from, other strains that are classified in group III. These findings contribute knowledge about the diversity of phytoplasmas affiliated with group III and provide information to aid the diagnosis of BRWB disease. References: (1) R. H. Converse et al. Plant Dis. 66:949, 1982. (2) R. Jomantiene et al. Int. J. Syst. Bacteriol. 48:269, 1998. (3) I.-M. Lee et al. Int. J. Syst. Bacteriol. 48:1153, 1998.
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Valiunas, D., A. Alminaite, J. Staniulis, R. Jomantiene, and R. E. Davis. "First Report of Alder Yellows Phytoplasma in the Eastern Baltic Region." Plant Disease 85, no. 10 (October 2001): 1120. http://dx.doi.org/10.1094/pdis.2001.85.10.1120b.
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Alnus glutinosa (alder) is widespread in Europe and is an important component of biological diversity in natural forest ecosystems in the Baltic Region. In 2000, diseased trees of A. glutinosa exhibiting characteristically phytoplasmal disease symptoms of shoot proliferation and leaf yellowing were observed in Aukstaitija National Park, Lithuania. In other parts of Europe, alder is affected by a phytoplasmal disease known as alder yellows, which is characterized by symptoms that include yellowing and reduced leaf size, die-back of branches, and decline of trees (2,3). Proliferation of shoots has not been previously reported with this disease. An association between alder yellows and infection by a phytoplasma has been reported in A. glutinosa in Germany and Italy, and a phytoplasma has been found in A. glutinosa in France and Hungary (2,4). We examined symptomatic alder from Lithuania using nested polymerase chain reaction (PCR) (1), primed by P1/P7 and followed by R16F2n/R16R2 (F2n/R2), for amplification of phytoplasmal ribosomal (r) DNA. The results indicated the presence of a phytoplasma, designated ALY-L, in the diseased alder. We classified the ALY-L phytoplasma through restriction fragment length polymorphism (RFLP) analysis of 16S rDNA. A 1.2-kbp fragment (F2n-R2 segment) of rDNA, amplified in PCR primed by F2n/R2, was analyzed using single endonuclease enzyme digestion with AluI, MseI, KpnI, HhaI, HaeIII, HpaI, HpaII, RsaI, HinfI, TaqI, Sau3AI, BfaI, and ThaI. On the basis of collective RFLP patterns, phytoplasma ALY-L was classified as a member of group 16SrV (group V, elm yellows group), subgroup C. The amplified 16S rDNA was cloned in Escherichia coli and sequenced, and the sequence was deposited in the GenBank data library (Accession No. AY028789). Nucleotide sequence alignment revealed that 16S rDNA from phytoplasma ALY-L shared 100% sequence similarity with 16S rDNA (GenBank Accession No. Y16387) from a phytoplasma associated with alder yellows (ALY) disease in Italy. The results support the conclusion that a strain of ALY phytoplasma is present in Lithuania. Phytoplasmas belonging to groups 16SrI (aster yellows phytoplasma group) and III (X-disease phytoplasma group) have been found in herbaceous plant species in Lithuania. This report records the first finding of a group V phytoplasma, and the first finding of a phytoplasma in a tree species in the eastern Baltic Region. These findings contribute knowledge about the diversity of phytoplasmas in the Baltic Region and the distribution of ALY phytoplasma in Europe. Apparently, A. glutinosa may be infected by the phytoplasma but not develop obvious disease symptoms, as has been reported elsewhere (3). Thus, it is possible that ALY-L phytoplasma is widespread, but as yet undetected, throughout the geographic range of alder in the Baltic Region. This possibility is supported by the finding of the monophagous leafhopper vector (Oncopsis alni) of ALY phytoplasma throughout Europe (cited in Maixner and Reinert [3]). Further research is needed to assess the impact of phytoplasmal infections such as those by ALY-related phytoplasma strains on trends in biological diversity in the natural forest ecosystems of the Baltic Region and elsewhere in Europe. References: (1) R. Jomantiene et al. Int. J. Syst. Bacteriol. 48:269, 1998. (2) W. Lederer and E. Seemüller. Eur. J. For. Pathol. 21:90, 1991. (3) M. Maixner and W. Reinert. Eur. J. Plant Pathol. 105:87, 1999. (4) R. Mäurer et al. Phytopathology 83:971, 1993.
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Sosilawaty, Sosilawaty, Belinda Hastari, and Ricardo Siregar. "Composition And Diversity Of Plant Species In The Two Types Of Land Cover Of Natural Laboratory Of Hampangen Educational Forest." International Journal of Biology and Biomedical Engineering 15 (May 14, 2021): 123–34. http://dx.doi.org/10.46300/91011.2021.15.16.
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Forests are natural resources that contribute to sustaining life support systems. The purpose of this study was to determine the composition and diversity of plant species in the Hampangen Educational Forest Nature Laboratory with the object of research on plant species diversity at growth rates of seedlings, poles, saplings, and trees in the observation plots of secondary swamp forest and swamp scrub. The research was conducted using a combination technique of paths and checkered lines in each of the 30 measurement plots in the two types of observation land. The results showed 52 types of plants found in all types of research land—a total of 42 species in secondary swamp forest and 26 species in scrublands. The types of plants that occupy the highest IVI at all growth levels are Akasia, Jambu-jambu, and Meranti. The Diversity Index of plant species in the study area on both land types was classified as moderate, namely in the range 1,871 - 2,968. The evenness index value (E) of plants in the land cover type of secondary swamp forest and swamp scrub was classified as high in the range of 0.753 - 0.849. The Species Richness Index (R) value of the secondary swamp forest land cover type is classified as high, whereas the swamp scrub land cover type is classified as low, while the average species similarity index in the two land cover types is low.
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Pietrowska-Borek, Małgorzata, Jędrzej Dobrogojski, Ewa Sobieszczuk-Nowicka, and Sławomir Borek. "New Insight into Plant Signaling: Extracellular ATP and Uncommon Nucleotides." Cells 9, no. 2 (February 2, 2020): 345. http://dx.doi.org/10.3390/cells9020345.
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New players in plant signaling are described in detail in this review: extracellular ATP (eATP) and uncommon nucleotides such as dinucleoside polyphosphates (NpnN’s), adenosine 5′-phosphoramidate (NH2-pA), and extracellular NAD+ and NADP+ (eNAD(P)+). Recent molecular, physiological, and biochemical evidence implicating concurrently the signaling role of eATP, NpnN’s, and NH2-pA in plant biology and the mechanistic events in which they are involved are discussed. Numerous studies have shown that they are often universal signaling messengers, which trigger a signaling cascade in similar reactions and processes among different kingdoms. We also present here, not described elsewhere, a working model of the NpnN’ and NH2-pA signaling network in a plant cell where these nucleotides trigger induction of the phenylpropanoid and the isochorismic acid pathways yielding metabolites protecting the plant against various types of stresses. Through these signals, the plant responds to environmental stimuli by intensifying the production of various compounds, such as anthocyanins, lignin, stilbenes, and salicylic acid. Still, more research needs to be performed to identify signaling networks that involve uncommon nucleotides, followed by omic experiments to define network elements and processes that are controlled by these signals.
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Wellman, Charles H., Hans Kerp, and Hagen Hass. "Spores of the Rhynie chert plant Horneophyton lignieri (Kidston & Lang) Barghoorn & Darrah, 1938." Transactions of the Royal Society of Edinburgh: Earth Sciences 94, no. 4 (December 2003): 429–43. http://dx.doi.org/10.1017/s0263593300000791.
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ABSTRACTDetailed studies have been undertaken on in situ spores of the plant Horneophyton lignieri (Kidston & Lang) Barghoorn & Darrah, 1938 preserved in the Rhynie chert. It is concluded that mature spores are trilete, with proximal radial ribbing, and a distal ornament of coni. These spores are identical to Emphanisporites decoratus Allen, 1965, a widely reported and morphologically distinctive dispersed spore taxon. Emphanisporites decoratus is a common element of dispersed spore assemblages from throughout the stratigraphical sequence of the Rhynie outlier, and it is concluded that the dispersed spore taxon E. decoratus was produced by H. lignieri. The nature (reproductive biology, ecology and distribution) of H. lignieri is interpreted on the basis of evidence from the dispersed spore record from the Rhynie outlier and elsewhere. It is concluded that H. lignieri was a common and widespread plant of the Lower Devonian. It flourished in the unusual hot springs environment of the Rhynie chert because it was preadapted to do so, not because it was a highly specialized and adapted plant. Integrated evidence from the in situ and dispersed spore records permits a detailed consideration of the biology of the plant H. lignieri.
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Larson, Brendon M. H., Paul M. Catling, and Gerald E. Waldron. "The biology of Canadian weeds. 135. Lonicera japonica Thunb." Canadian Journal of Plant Science 87, no. 2 (April 1, 2007): 423–38. http://dx.doi.org/10.4141/p06-063.
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Japanese honeysuckle (Lonicera japonica Thunb.) is a twining semi-evergreen vine native to Japan, Korea and eastern China. Over the past 150 yr it has been introduced as an ornamental and become established in temperate and tropical regions worldwide. It was first discovered in Canada in 1976 in southwestern Ontario woodlands and has since been found growing without cultivation in 15 localities. While L. japonica does not occur very frequently in southern Ontario, climate change models suggest that it may become more abundant in this region. Its predominance elsewhere derives from morphological and physiological characteristics that allow it to be particularly successful in the edge habitats of fragmented landscapes. Through extensive vegetative propagation and competitive ability it occupies space which may otherwise host a diverse native flora. The plant has many uses in Asian medicine and is a popular ornamental, but has been prohibited in some regions due to its displacement of other species. A combination of cutting and foliar application of glyphosate has proven to be an effective control method in some circumstances. Planting of L. japonica should be discouraged and horticulturalists should consider alternative attractive vines. The spread of L. japonica should be monitored in Ontario and control of newly established populations should be considered to avoid costly large scale control in the future. Key words: Invasive species, Lonicera japonica, weed biology, climate change
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Matsunaga, Sachihiro, Fumi Yagisawa, Maki Yamamoto, Wakana Uchida, Shunsuke Nakao, and Shigeyuki Kawano. "LTR retrotransposons in the dioecious plant Silene latifolia." Genome 45, no. 4 (August 1, 2002): 745–51. http://dx.doi.org/10.1139/g02-026.
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Conserved domains of two types of LTR retrotransposons, Ty1copia- and Ty3gypsy-like retrotransposons, were isolated from the dioecious plant Silene latifolia, whose sex is determined by X and Y chromosomes. Southern hybridization analyses using these retrotransposons as probes resulted in identical patterns from male and female genomes. Fluorescence in situ hybridization indicated that these retrotransposons do not accumulate specifically in the sex chromosomes. These results suggest that recombination between the sex chromosomes of S. latifolia has not been severely reduced. Conserved reverse transcriptase regions of Ty1copia-like retrotransposons were isolated from 13 different Silene species and classified into two major families. Their categorization suggests that parallel divergence of the Ty1copia-like retrotransposons occurred during the differentiation of Silene species. Most functional retrotransposons from three dioecious species, S. latifolia, S. dioica, and S. diclinis, fell into two clusters. The evolutionary dynamics of retrotransposons implies that, in the genus Silene, dioecious species evolved recently from gynodioecious species.Key words: retrotransposon, dioecious plant, sex chromosome.
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Bayón, Álvaro, and Montserrat Vilà. "Horizon scanning to identify invasion risk of ornamental plants marketed in Spain." NeoBiota 52 (November 11, 2019): 47–86. http://dx.doi.org/10.3897/neobiota.52.38113.
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Horticulture is one of the main pathways of deliberate introduction of non-native plants, some of which might become invasive. Of the 914 commercial ornamental outdoor plant species sold in Spain, 700 (77%) are non-native (archaeophytes excluded) marketed species. We classified these into six different lists based on their invasion status in Spain and elsewhere, their climatic suitability in Spain and their potential environmental and socioeconomic impacts. We found sufficient information for 270 species. We provide a Priority List of eight regulated invasive species that were still available on the market. We also established an Attention List with 68 non-regulated invasive and potentially invasive species that might cause various impacts. To prioritise the species within the Attention List, we further assessed the risk of invasion of these species by using an adaptation of the Australian WRA protocol and the level of societal interest estimated from values of the Google Trends tool. We also propose a Green List of seven species with probably no potential to become invasive, a Watch List with 27 potentially invasive species with few potential impacts and an Uncertainty List with 161 species of known status but with insufficient information to include them in any of the previous lists. We did not find sufficient information for 430 (61%) of the marketed non-native plant species, which were compiled into a Data Deficient List. Our findings of prohibited species for sale highlight the need for stronger enforcement of the regulations on invasive plant species in Spain. In addition, our results highlight the need for additional information on potential impacts and climate suitability of horticultural plants being sold in Spain, as insufficient information could be found to assess the invasion risk for most species.
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Editorial team, Collective. "Meeting report from the Third European Congress of Virology, 1-5 September 2007 in Nuremberg, Germany." Eurosurveillance 12, no. 12 (December 1, 2007): 15–16. http://dx.doi.org/10.2807/esm.12.12.00757-en.
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Nuremberg was the third European city to host the European Congress of Virology in September this year (http://www.eurovirology.org). Some 1,500 scientists from Europe and elsewhere came together to share their knowledge on basic and applied research in clinical, veterinary and plant virology. The main focus was on human pathogenic viruses, providing a platform where basic research and clinical application came into contact. The topics covered all areas of research in virology, from basic molecular biology and immunology to epidemiology, vaccine development, and diagnostics. For this meeting report, the Editorial team has selected some of our highlights out of the many excellent keynote lectures and workshop contributions.
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Amend, Anthony S., Gerald M. Cobian, Aki J. Laruson, Kristina Remple, Sarah J. Tucker, Kirsten E. Poff, Carmen Antaky, et al. "Phytobiomes are compositionally nested from the ground up." PeerJ 7 (March 18, 2019): e6609. http://dx.doi.org/10.7717/peerj.6609.
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Plant-associated microbes are critical players in host health, fitness and productivity. Despite microbes’ importance in plants, seeds are mostly sterile, and most plant microbes are recruited from an environmental pool. Surprisingly little is known about the processes that govern how environmental microbes assemble on plants in nature. In this study we examine how bacteria are distributed across plant parts, and how these distributions interact with spatial gradients. We sequenced amplicons of bacteria from the surfaces of six plant parts and adjacent soil of Scaevola taccada, a common beach shrub, along a 60 km transect spanning O’ahu island’s windward coast, as well as within a single intensively-sampled site. Bacteria are more strongly partitioned by plant part as compared with location. Within S. taccada plants, microbial communities are highly nested: soil and rhizosphere communities contain much of the diversity found elsewhere, whereas reproductive parts fall at the bottom of the nestedness hierarchy. Nestedness patterns suggest either that microbes follow a source/sink gradient from the ground up, or else that assembly processes correlate with other traits, such as tissue persistence, that are vertically stratified. Our work shines light on the origins and determinants of plant-associated microbes across plant and landscape scales.
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SURYAWAN, ADY, ISDOMO YULIANTORO, ANITA MAYASARI, and MARGARETTA CHRISTI. "Identification of Aves, Herpetofauna and Arthropods in Miangas Island (Indonesia), the borderline of Wallacea ecoregion." Biodiversitas Journal of Biological Diversity 18, no. 4 (October 7, 2017): 1528–37. http://dx.doi.org/10.13057/biodiv/d180430.
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Suryawan A, Yuliantoro I, Mayasari A, Christita M. 2016. Identification of Aves, Herpetofauna and Arthropods in Miangas Island (Indonesia), the borderline of Wallacea ecoregion. Biodiversitas 18: 1528-1537. Miangas Island is located on the northeast of Wallacea and bordered by the Philippines and it belongs to Talaud archipelago. This study aims to identify the species of terrestrial wildlife in Miangas Island. Observations used the direct encounter method starting at 7:00 to 17:00 pm and they were conducted through four times visits in October and December 2015, April and May 2016. Some species were found, such as 15 species of birds, 3 species of lizards, 1 snake and 1 species of Arthropods. Hirundapus caudacutus and Butastur indicus are migrant bird species. Lamprolepis smaragdina is green and classified as tree climber type. It is included to hybrid lizard type of the Pacific and the Philippines. Based on IUCN database, Eos histrio is classified as endangered group (E), Ducula pickeringii as vulnerable (V) Todirhamphus enigma enigma is classified as near threatened group (NT), Birgus latro is classified as Data deficient (DD), while Butastur indicus, Lanius Schach, Nectarinia jugular plateni, Todirhamphus chloris, Hirundo tahitica, Hirundapus caudacutus, Egretta sacra, Ardea alba, Anthus cervinus, Motacilla cinerea, Cuculus saturatus, Passer Montanus, Ducula pickeringii, Eutropis multicarinata multicarinata, Lamprolepis smaragdina, Emoia caeruleocauda and Laticauda laticauda are classified as low risk (LC).
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Kwon, Annie, Steven Scott, Rahil Taujale, Wayland Yeung, Krys J. Kochut, Patrick A. Eyers, and Natarajan Kannan. "Tracing the origin and evolution of pseudokinases across the tree of life." Science Signaling 12, no. 578 (April 23, 2019): eaav3810. http://dx.doi.org/10.1126/scisignal.aav3810.
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Protein phosphorylation by eukaryotic protein kinases (ePKs) is a fundamental mechanism of cell signaling in all organisms. In model vertebrates, ~10% of ePKs are classified as pseudokinases, which have amino acid changes within the catalytic machinery of the kinase domain that distinguish them from their canonical kinase counterparts. However, pseudokinases still regulate various signaling pathways, usually doing so in the absence of their own catalytic output. To investigate the prevalence, evolutionary relationships, and biological diversity of these pseudoenzymes, we performed a comprehensive analysis of putative pseudokinase sequences in available eukaryotic, bacterial, and archaeal proteomes. We found that pseudokinases are present across all domains of life, and we classified nearly 30,000 eukaryotic, 1500 bacterial, and 20 archaeal pseudokinase sequences into 86 pseudokinase families, including ~30 families that were previously unknown. We uncovered a rich variety of pseudokinases with notable expansions not only in animals but also in plants, fungi, and bacteria, where pseudokinases have previously received cursory attention. These expansions are accompanied by domain shuffling, which suggests roles for pseudokinases in plant innate immunity, plant-fungal interactions, and bacterial signaling. Mechanistically, the ancestral kinase fold has diverged in many distinct ways through the enrichment of unique sequence motifs to generate new families of pseudokinases in which the kinase domain is repurposed for noncanonical nucleotide binding or to stabilize unique, inactive kinase conformations. We further provide a collection of annotated pseudokinase sequences in the Protein Kinase Ontology (ProKinO) as a new mineable resource for the signaling community.
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Adam, Ishag, Mohammad Shafiul Alam, Sisay Alemu, Chanaki Amaratunga, Roberto Amato, Voahangy Andrianaranjaka, Nicholas M. Anstey, et al. "An open dataset of Plasmodium vivax genome variation in 1,895 worldwide samples." Wellcome Open Research 7 (April 14, 2022): 136. http://dx.doi.org/10.12688/wellcomeopenres.17795.1.
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This report describes the MalariaGEN Pv4 dataset, a new release of curated genome variation data on 1,895 samples of Plasmodium vivax collected at 88 worldwide locations between 2001 and 2017. It includes 1,370 new samples contributed by MalariaGEN and VivaxGEN partner studies in addition to previously published samples from these and other sources. We provide genotype calls at over 4.5 million variable positions including over 3 million single nucleotide polymorphisms (SNPs), as well as short indels and tandem duplications. This enlarged dataset highlights major compartments of parasite population structure, with clear differentiation between Africa, Latin America, Oceania, Western Asia and different parts of Southeast Asia. Each sample has been classified for drug resistance to sulfadoxine, pyrimethamine and mefloquine based on known markers at the dhfr, dhps and mdr1 loci. The prevalence of all of these resistance markers was much higher in Southeast Asia and Oceania than elsewhere. This open resource of analysis-ready genome variation data from the MalariaGEN and VivaxGEN networks is driven by our collective goal to advance research into the complex biology of P. vivax and to accelerate genomic surveillance for malaria control and elimination.
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Ames, Bruce N. "Prolonging healthy aging: Longevity vitamins and proteins." Proceedings of the National Academy of Sciences 115, no. 43 (October 15, 2018): 10836–44. http://dx.doi.org/10.1073/pnas.1809045115.
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It is proposed that proteins/enzymes be classified into two classes according to their essentiality for immediate survival/reproduction and their function in long-term health: that is, survival proteins versus longevity proteins. As proposed by the triage theory, a modest deficiency of one of the nutrients/cofactors triggers a built-in rationing mechanism that favors the proteins needed for immediate survival and reproduction (survival proteins) while sacrificing those needed to protect against future damage (longevity proteins). Impairment of the function of longevity proteins results in an insidious acceleration of the risk of diseases associated with aging. I also propose that nutrients required for the function of longevity proteins constitute a class of vitamins that are here named “longevity vitamins.” I suggest that many such nutrients play a dual role for both survival and longevity. The evidence for classifying taurine as a conditional vitamin, and the following 10 compounds as putative longevity vitamins, is reviewed: the fungal antioxidant ergothioneine; the bacterial metabolites pyrroloquinoline quinone (PQQ) and queuine; and the plant antioxidant carotenoids lutein, zeaxanthin, lycopene, α- and β-carotene, β-cryptoxanthin, and the marine carotenoid astaxanthin. Because nutrient deficiencies are highly prevalent in the United States (and elsewhere), appropriate supplementation and/or an improved diet could reduce much of the consequent risk of chronic disease and premature aging.
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Renner, Swen C., John H. Rappole, Peter Leimgruber, Daniel S. Kelly, Nay Myo Shwe, Thein Aung, and Myint Aung. "Land cover in the Northern Forest Complex of Myanmar: new insights for conservation." Oryx 41, no. 1 (January 2007): 27–37. http://dx.doi.org/10.1017/s0030605307001603.
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We classified land cover in the Northern Forest Complex in Myanmar using satellite imagery (MODIS/NDVI) and field surveys carried out in 2001, 2004 and 2005. Using Landsat TM/ETM+ images from 1991 and 1999 we determined deforestation rates. The c. 22,000 km2 Northern Forest Complex, including the Hkakabo Razi National Park in northern Kachin State, is characterized by tropical to subtropical pristine forests with low human impact. The area studied, which includes land beyond the boundaries of Hkakabo Razi National Park, is of special conservation importance because it provides a refuge for many rare plant and animal species. Less than 1.4% of the area is affected by humans (excluding hunting) and deforestation rates are low at <0.01% annually. We observed several bird and mammal species that are considered threatened elsewhere. Based on our data, those of previous surveys, and the fact that >10 new vertebrate species have been described in the region since 1999, it is likely there are still undescribed vertebrate species to be discovered. We recommend extending the boundaries of Hkakabo Razi National Park to the south and west, connecting it to Hpongkan Razi Wildlife Sanctuary, and/or adding an additional sanctuary in the Naung Mung area, to protect the vast yet still pristine rainforest habitats that are home to many of the most important aspects of the region's biodiversity.
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NAIK, SANJAY, and SANJIT KUMAR. "APPLICATIONS OF PLANT LECTINS IN BIOTECHNOLOGY AND THERAPEUTICS." Journal of microbiology, biotechnology and food sciences 11, no. 4 (February 1, 2022): e4224. http://dx.doi.org/10.55251/jmbfs.4224.
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Lectins are carbohydrate-binding proteins broadly used in various therapeutic and biomedical applications. The variable affinity of lectins towards variety of carbohydrates has raised attention for the biologist to explore functional aspects of lectins. Lectins express specificity to simple carbohydrates for example mannose, lactose, sialic acid, complex glycan, and glycoproteins. Lectins are classified based on their sugar specificity and are used as a tool to study protein-carbohydrate interactions. Lectins are ubiquitous in nature and identified from all sources such as bacteria, fungi, algae, and animals. Plants are the most abundant source of lectins, and till now, more than three hundred lectins were characterized from plants. These are distributed to various parts of a plant according to their requirements and function. The physiological role of lectins in a plant is still not well understood. The overabundant presence of lectins in plant seeds and storage tissues indicated their role in plant development. Plant lectins shows a broad range of activities like antibacterial, antifungal, insecticidal, anticancerous, antileishmanial, antiviral, and anticoagulants. In this review, we aim to highlight the plant lectins classification and their application in various biological aspects.
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Thomson, Melody B., Shane D. Campbell, and Anthony J. Young. "Ground pearls (Hemiptera: Margarodidae) in crops and pastures: biology and options for management." Crop and Pasture Science 72, no. 9 (2021): 762. http://dx.doi.org/10.1071/cp20235.
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Ground pearls (Hemiptera: Margarodidae), so called for their shiny spherical cyst stage, are important root-feeding pests of a broad range of plants predominantly belonging to the family Poaceae. In the tropical and subtropical regions of eastern Australia, ground pearl species cause significant damage on sugarcane and turf grasses and have been identified at multiple sites of pasture dieback in Queensland. The potential impact of ground pearls on pasture production in Australia and elsewhere is largely unknown. This paper reviews Australian and international literature on the biology and management of this poorly understood group of pests. Ground pearls have several features that make control difficult, including a resilient cyst which provides resistance to drought and excessive moisture, a relative impermeability to insecticides, and ease of dispersal through movement of soil. Ground pearls can also modulate the period of encystment to survive adverse environmental conditions, with some species capable of surviving for years while disassociated from a host. No insecticide effectively controls ground pearl cysts. Biological control agents have been identified for some species; however, these pathogens are relatively ineffective on subterranean ground pearl cysts. Cultural control methods such as cultivation and fallowing have helped to reduce ground pearl populations in sugarcane. In turf, practices that maintain plant health such as adequate irrigation and nutrition can mask signs of ground pearl infestation. The paucity of research conducted on the biology and impact of ground pearls represents a constraint to improving management of this pest.
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de Jesús-Pires, Carolline, José Ribamar Costa Ferreira-Neto, João Pacifico Bezerra-Neto, Ederson Akio Kido, Roberta Lane de Oliveira Silva, Valesca Pandolfi, Ana Carolina Wanderley-Nogueira, et al. "Plant Thaumatin-like Proteins: Function, Evolution and Biotechnological Applications." Current Protein & Peptide Science 21, no. 1 (January 27, 2020): 36–51. http://dx.doi.org/10.2174/1389203720666190318164905.
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Thaumatin-like proteins (TLPs) are a highly complex protein family associated with host defense and developmental processes in plants, animals, and fungi. They are highly diverse in angiosperms, for which they are classified as the PR-5 (Pathogenesis-Related-5) protein family. In plants, TLPs have a variety of properties associated with their structural diversity. They are mostly associated with responses to biotic stresses, in addition to some predicted activities under drought and osmotic stresses. The present review covers aspects related to the structure, evolution, gene expression, and biotechnological potential of TLPs. The efficiency of the discovery of new TLPs is below its potential, considering the availability of omics data. Furthermore, we present an exemplary bioinformatics annotation procedure that was applied to cowpea (Vigna unguiculata) transcriptome, including libraries of two tissues (root and leaf), and two stress types (biotic/abiotic) generated using different sequencing approaches. Even without using genomic sequences, the pipeline uncovered 56 TLP candidates in both tissues and stresses. Interestingly, abiotic stress (root dehydration) was associated with a high number of modulated TLP isoforms. The nomenclature used so far for TLPs was also evaluated, considering TLP structure and possible functions identified to date. It is clear that plant TLPs are promising candidates for breeding purposes and for plant transformation aiming a better performance under biotic and abiotic stresses. The development of new therapeutic drugs against human fungal pathogens also deserves attention. Despite that, applications derived from TLP molecules are still below their potential, as it is evident in our review.
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Majka, Christopher G., Yves Bousquet, Christine Noronha, and Mary E. Smith. "The distribution, zoogeography, and composition of Prince Edward Island Carabidae (Coleoptera)." Canadian Entomologist 140, no. 1 (February 2008): 128–41. http://dx.doi.org/10.4039/n07-024.
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AbstractFourteen species of Carabidae are added to Prince Edward Island’s (P.E.I.) faunal list, bringing the known fauna to 167 species. Bembidion nitidum (Kirby) and Bembidion obtusum Audinet-Serville are newly recorded for the Maritime Provinces. Six species are removed from P.E.I.’s faunal list. The history of collecting of Carabidae on P.E.I. is briefly recounted. Despite differences in land area and distance from the mainland between P.E.I., Cape Breton Island, and insular Newfoundland, their carabid faunas exhibit many similarities in size and composition. The native carabid fauna of P.E.I. comprises 49% of the species in the combined Maritime Provinces fauna, perhaps reflecting an island-related diminution of species diversity. The proportion of flightless species on P.E.I. (4.9%) is less than that in the Maritime Provinces as a whole (7.1%), an apparent indication that the Northumberland Strait has been a barrier to colonization. Twenty-seven introduced species are found on P.E.I., 26 of which can be classified as synanthropic and may have originated in dry-ballast quarries in southwestern England. Although the earliest dates of detection of many introduced species on P.E.I. are substantially later than elsewhere in the Maritimes, this reflects the paucity of early collecting. Land-management practices on P.E.I. (large-scale and early forest clearances, intensive agriculture, and the extensive use of biocides) may have had an impact on P.E.I.’s carabid fauna.
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Lavoie, Claude, and Jacques Brisson. "Training Environmental Managers to Control Invasive Plants: Acting to Close the Knowing–Doing Gap." Invasive Plant Science and Management 8, no. 4 (December 2015): 430–35. http://dx.doi.org/10.1614/ipsm-d-15-00033.1.
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AbstractMany conservation land managers working with invasive plants rely largely on their own experience and advice from fellow managers for controlling weeds, and rarely take into consideration the scientific literature, a concrete example of a knowing–doing gap. We argue that invasion scientists should directly teach managers best practices for control. In 2013, we created a training program on five invasive plant species, specifically tailored to Québec (Canada) environmental managers. The course material was science-based, and included details on methods and costs. Here, we explain how this idea emerged, how the program was constructed and which types of managers were targeted. With modest resources, we reached 163 managers in less than 18 mo, who collectively oversee invasive species management for 41% of the Québec population. We presented factual information for all control methods, giving the environmental managers the tools to critically and objectively assess various options. Participants especially appreciated the highly practical content of the training and that they could submit their own invasion case for discussion. This program represents significant progress in narrowing the knowing–doing gap associated with the control of invasive plants in Québec, and we encourage such initiatives elsewhere for all fields of invasion biology.
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Freitas, J. Renato de, and James J. Germida. "Plant growth promoting rhizobacteria for winter wheat." Canadian Journal of Microbiology 36, no. 4 (April 1, 1990): 265–72. http://dx.doi.org/10.1139/m90-046.
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The association of winter wheat (Triticum aestivum L. cv. Norstar) with root-colonizing bacteria (rhizobacteria) was studied in potted soil experiments in the growth chamber. Thirty-six known bacteria, some of which have been reported to stimulate plant growth, and 75 isolates obtained from the rhizosphere of winter wheat were tested for their effects on plant growth and development in two different soils. Two known bacteria and 12 isolates stimulated growth of winter wheat. Of these, the most effective were nine isolates that significantly (P < 0.01) increased plant height, root and shoot biomass, and number of tillers. The plant growth promoting effects of isolates were different in the two soils. Three of these strains were tentatively classified as Pseudomonas aeruginosa, and two each as Pseudomonas cepacia, Pseudomonas fluorescens, and Pseudomonas putida. Some isolates induced significant increases in seedling emergence rates and (or) demonstrated antagonism in vitro against Rhizoctonia solani and Leptosphaeria maculans. These results demonstrate the potential use of plant growth promoting rhizobacteria as inoculants for winter wheat. Key words: pseudomonads, plant growth promoting rhizobacteria, winter wheat, rhizosphere, bacterial inoculants.
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MINEYUKI, Y., and B. E. S. GUNNING. "A role for preprophase bands of microtubules in maturation of new cell walls, and a general proposal on the function of preprophase band sites in cell division in higher plants." Journal of Cell Science 97, no. 3 (November 1, 1990): 527–37. http://dx.doi.org/10.1242/jcs.97.3.527.
Full textAbstract:
Time-lapse video microscopy of dividing Tradescantia stamen hair cells that are undergoing cytokinesis has revealed that the maturation of the new cell wall is aided by factors at the site where the preprophase band of microtubules forms before mitosis. The wall changes from being fluid and wrinkled before it is inserted into the parental wall at the end of cytokinesis, to being stiff and flat by about 20 min after the time of attachment. This change occurs only if the new wall is inserted at the site formerly occupied by the preprophase band. The cell plate does not flatten when it is caused to insert elsewhere by drug treatments or by centrifugal displacement. If insertion at the correct site is delayed locally by centrifugation against the direction of expansion of the cell plate, then flattening is delayed at the same locality. In combination with a number of points from the literature of plant cell division, some of them very long-standing, our observations lead to a general proposal regarding the nature of the preprophase band site, its mode of action and timing of its operations, and how its role in spatial regulation of histogenesis is achieved.
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Gong, Xiaoping, and Shanhong Wang. "New Insights into Evolution of the ABC Transporter Family in Mesostigma viride, a Unicellular Charophyte Algae." Current Issues in Molecular Biology 44, no. 4 (April 11, 2022): 1646–60. http://dx.doi.org/10.3390/cimb44040112.
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ATP-binding cassette (ABC) transporters play an important role in driving the exchange of multiple molecules across cell membranes. The plant ABC transporter family is among the largest protein families, and recent progress has advanced our understanding of ABC classification. However, the ancestral form and deep origin of plant ABCs remain elusive. In this study, we identified 59 ABC transporters in Mesostigma viride, a unicellular charophyte algae that represents the earliest diverging lineage of streptophytes, and 1034 ABCs in genomes representing a broad taxonomic sampling from distantly related plant evolutionary lineages, including chlorophytes, charophytes, bryophytes, lycophytes, gymnosperms, basal angiosperms, monocots, and eudicots. We classified the plant ABC transporters by comprehensive phylogenetic analysis of each subfamily. Our analysis revealed the ancestral type of ABC proteins as well as duplication and gene loss during plant evolution, contributing to our understanding of the functional conservation and diversity of this family. In summary, this study provides new insight into the origin and evolution of plant ABC transporters.
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West, John B. "Alexander von Humboldt (1769–1859): early high-altitude explorer and renowned plant naturalist." American Journal of Physiology-Lung Cellular and Molecular Physiology 320, no. 4 (April 1, 2021): L583—L589. http://dx.doi.org/10.1152/ajplung.00404.2020.
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Alexander von Humboldt (1769–1859) was one of the most distinguished German scientists of the late 18th and early 19th centuries. His fame came chiefly from his extensive explorations in South America and his eminence as a plant naturalist. He attempted to climb the inactive volcano Chimborazo in Ecuador, which was thought to be the highest mountain in the world at the time, and he reached an altitude of about 5,543 m, which was a record height for humans. During the climb, he had typical symptoms of acute mountain sickness, which he correctly attributed to the low level of oxygen, and he was apparently the first person to make this connection. His ability as a naturalist enabled him to recognize the effect of high altitude on the distribution of plants, and by comparing his observations on Chimborazo with those in the European Alps and elsewhere, he inferred that the deleterious effects of high altitude were universal. During his return trip to Europe, he called on President Thomas Jefferson in Washington, where he was given a warm reception, and discussed conservation issues. He then returned to Paris, where he produced 29 volumes over a period of 31 years describing his travels. Here the effects of high altitude on the distribution of plants compared with animals are briefly reviewed. Following Humboldt’s death in 1859, there was extensive coverage of his contributions, but curiously, his fame has diminished over the years, and inexplicably, he now has a lower profile in North America.
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Marvaldi, A. E., R. G. Oberprieler, C. H. C. Lyal, T. Bradbury, and R. S. Anderson. "Phylogeny of the Oxycoryninae sensu lato (Coleoptera:Belidae) and evolution of host-plant associations." Invertebrate Systematics 20, no. 4 (2006): 447. http://dx.doi.org/10.1071/is05059.
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Phylogenetic relationships among the genera of the subfamily Oxycoryninae and other belids (Curculionoidea) were reconstructed by cladistic analysis using 21 terminals and 98 characters: 62 from imaginal morphology, 33 from larval morphology and three biological characters relating to host plants and larval feeding habits. Terminal taxa represent all extant genera of Oxycoryninae, two genera of each of the three tribes of Belinae plus two outgroup taxa used to root the tree. New information on the larvae and biology of the metrioxenines is used in phylogenetic reconstruction. In accord with the single optimal cladogram obtained, a revised classification of the Oxycoryninae is proposed. The subfamily is classified into three tribes (Oxycorynini, Metrioxenini and Aglycyderini), with the tribe Oxycorynini further classified into three subtribes (Oxycraspedina Marvaldi & Oberprieler, subtr. nov., Oxycorynina and Allocorynina) and the tribe Metrioxenini into two subtribes (Metrioxenina and Afrocorynina ( = Hispodini, syn. nov.)). Larval and adult unambiguous synapomorphies defining each clade are identified. Tracing the evolution of biological traits from the phylogenetic estimate indicates that drastic shifts to phylogenetically distant host plants occurred from the ancestral belid association with conifers. Structural, chemical and/or ecological similarities of the plant organs consumed apparently had a major influence in the colonisation of different plant taxa by this group of weevils.
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Huang, Qin, Alona Muzitansky, and Eugene J. Mark. "Pulmonary Neuroendocrine Carcinomas." Archives of Pathology & Laboratory Medicine 126, no. 5 (May 1, 2002): 545–53. http://dx.doi.org/10.5858/2002-126-0545-pnc.
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Abstract Context.—Primary pulmonary neuroendocrine tumors are traditionally classified into 3 major types: typical carcinoid (TC), atypical carcinoid (AC), and large cell neuroendocrine carcinoma (LC) or small cell neuroendocrine carcinoma (SC). Confusion arises frequently regarding the malignant nature of TC and the morphologic differentiation between AC and LC or SC. Objective.—To provide clinicopathologic evidence to streamline and clarify the histomorphologic criteria for this group of tumors, emphasizing the prognostic implications. Patients.—To minimize variability in diagnostic criteria and treatment plans, we analyzed a group of patients whose diagnosis and treatment occurred at a single institution. We reviewed 234 cases of primary pulmonary neuroendocrine tumors and thoroughly studied 50 cases of resected tumors from 1986 to 1995. Results.—On the basis of morphologic characteristics and biologic behaviors of the tumors, we agree with many previous investigators that these tumors are all malignant and potentially aggressive. Based on our accumulated data, we have modified Gould criteria and reclassified these tumors into 5 types: (1) well-differentiated neuroendocrine carcinoma (otherwise called TC) (14 cases, with less than 1 mitosis per 10 high-power fields [HPF] with or without minimal necrosis); (2) moderately differentiated neuroendocrine carcinoma (otherwise called low-grade AC) (6 cases, with less than 10 mitoses per 10 HPF and necrosis evident at high magnification); (3) poorly differentiated neuroendocrine carcinoma (otherwise called high-grade AC) (10 cases, with more than 10 mitoses per 10 HPF and necrosis evident at low-power magnification); (4) undifferentiated LC (5 cases, with more than 30 mitoses per 10 HPF and marked necrosis); and (5) undifferentiated SC (15 cases, with more than 30 mitoses per 10 HPF and marked necrosis). The 5-year survival rates were 93%, 83%, 70%, 60%, and 40% for well, moderately, and poorly differentiated, and undifferentiated large cell and small cell neuroendocrine carcinomas, respectively. We found nodal metastasis in 28% of TC in this retrospective review, a figure higher than previously recorded. Conclusion.—Using a grading system and terms comparable to those used for many years and used for neuroendocrine tumors elsewhere in the body, we found that classification of pulmonary neuroendocrine carcinomas as well, moderately, poorly differentiated, or undifferentiated provides prognostic information and avoids misleading terms and concepts. This facilitates communication between pathologists and clinicians and thereby improves diagnosis and management of the patient.
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Dong, Chen, Huigang Hu, and Jianghui Xie. "Genome-wide analysis of the DNA-binding with one zinc finger (Dof) transcription factor family in bananas." Genome 59, no. 12 (December 2016): 1085–100. http://dx.doi.org/10.1139/gen-2016-0081.
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DNA-binding with one finger (Dof) domain proteins are a multigene family of plant-specific transcription factors involved in numerous aspects of plant growth and development. In this study, we report a genome-wide search for Musa acuminata Dof (MaDof) genes and their expression profiles at different developmental stages and in response to various abiotic stresses. In addition, a complete overview of the Dof gene family in bananas is presented, including the gene structures, chromosomal locations, cis-regulatory elements, conserved protein domains, and phylogenetic inferences. Based on the genome-wide analysis, we identified 74 full-length protein-coding MaDof genes unevenly distributed on 11 chromosomes. Phylogenetic analysis with Dof members from diverse plant species showed that MaDof genes can be classified into four subgroups (StDof I, II, III, and IV). The detailed genomic information of the MaDof gene homologs in the present study provides opportunities for functional analyses to unravel the exact role of the genes in plant growth and development.
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Chau, Nguyen Ngoc Bao, and Le Thuy To Nhu. "Big-eged bugs Geocoris: Diets research and potential of use in prevention of a number of insect pests in Vietnam." ENGINEERING AND TECHNOLOGY 9, no. 1 (June 4, 2020): 70–77. http://dx.doi.org/10.46223/hcmcoujs.tech.en.9.1.353.2019.
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Big-eyed bugs Geocoris spp. (Lygaeidae, Hemiptera) are small insects that is found in many parts of the world. They are beneficial because they eat a multitude of insect pests in agriculture. Big-eyed bugs Geocoris spp. are insects that receive research attention in Florida and elsewhere because of the benefits that this species give to plants (Mead, 2001). Big-eyed bugs reproduce many generations in a year on weeds, perennial crops, bushes. In spring the female big-eyed bugs start laying eggs on the bud, the leaves of the host plant. Understanding the biology and the role of predator Geocoris spp. in ecosystem will provide an alternative method in sustainable agriculture development. In this short review, we discuss some convenient diets for the application of mass rearing Geocoris spp.
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Yin, Zhongwei, Fachao Shi, Hongmei Jiang, Daniel P. Roberts, Sanfeng Chen, and Bingquan Fan. "Phosphate solubilization and promotion of maize growth by Penicillium oxalicum P4 and Aspergillus niger P85 in a calcareous soil." Canadian Journal of Microbiology 61, no. 12 (December 2015): 913–23. http://dx.doi.org/10.1139/cjm-2015-0358.
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Alternative tactics for improving phosphorus nutrition in crop production are needed in China and elsewhere, as the overapplication of phosphatic fertilizers can adversely impact agricultural sustainability. Penicillium oxalicum P4 and Aspergillus niger P85 were isolated from a calcareous soil in China that had been exposed to excessive application of phosphatic fertilizer for decades. Each isolate excreted a number of organic acids into, acidified, and solubilized phosphorus in a synthetic broth containing insoluble tricalcium phosphate or rock phosphate. Isolate P4, applied as a seed treatment, increased maize fresh mass per plant when rock phosphate was added to the calcareous soil in greenhouse pot studies. Isolate P85 did not increase maize fresh mass per plant but did significantly increase total phosphorus per plant when rock phosphate was added. Significant increases in 7 and 4 organic acids were detected in soil in association with isolates P4 and P85, respectively, relative to the soil-only control. The quantity and (or) number of organic acids produced by these isolates increased when rock phosphate was added to the soil. Both isolates also significantly increased available phosphorus in soil in the presence of added rock phosphate and effectively colonized the maize rhizosphere. Studies reported here indicate that isolate P4 is adapted to and capable of promoting maize growth in a calcareous soil. Plant-growth promotion by this isolate is likely due, at least in part, to increased phosphorus availability resulting from the excretion of organic acids into, and the resulting acidification of, this soil.
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Beckie, Hugh J., Ardath Francis, and Linda M. Hall. "The Biology of Canadian Weeds. 27. Avena fatua L. (updated)." Canadian Journal of Plant Science 92, no. 7 (November 2012): 1329–57. http://dx.doi.org/10.4141/cjps2012-005.
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Beckie, H. J., Francis, A. and Hall, L. M. 2012. The Biology of Canadian Weeds. 27. Avena fatua L. (Updated). Can. J. Plant Sci. 92: 1329–1357. An updated review of biological information is provided for Avena fatua. A widespread species originating in Eurasia, A. fatua is one of the 10 worst annual weeds of temperate agricultural regions of the world. Key weediness traits of this highly selfing species include fecundity, seed shatter, and a large and persistent seed bank with variable degrees of primary seed dormancy. The species occurs in all Canadian provinces and most states in the USA. In Canada, it is most troublesome as a weed in the prairies, where it has spread throughout crop areas in all climatic zones. Depending upon plant density and relative time of emergence, A. fatua competition may reduce annual crop yields by as much as 70%. First cohort emergence of A. fatua coincides with planting and emergence of spring-seeded crops, although additional cohorts can emerge throughout the growing season. Avena fatua is more abundant in zero-than intensive-tillage systems; the former regime promotes earlier and greater emergence because of a shallower and less persistent seed bank. Despite the introduction of highly efficacious herbicides in the 1970s and 1980s, abundance of the species has not declined across the Canadian prairies or elsewhere. The continual evolution of herbicide-resistant A. fatua populations, seed spread via farm machinery, and limited herbicide modes of action for its control threaten sustained annual field crop production in many temperate agricultural areas. Further adoption and integration of multiple non-herbicidal weed management practices, such as enhanced crop seeding rate, competitive crops and cultivars, and precision fertilizer placement, should help mitigate A. fatua interference. The species has some beneficial uses as an alternative feed and food constituent or industrial feedstock, as well as potential in cultivated oat (Avena sativa L.) improvement.
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Rahmani, Mohamed Elhadi, Hadj Ahmed Bouarara, Abdelmalek Amine, Reda Mohamed Hamou, and Hanane Menad. "New Supervised Approach for Plant Leaves Classification using Artificial Social Bees." International Journal of Organizational and Collective Intelligence 6, no. 1 (January 2016): 15–28. http://dx.doi.org/10.4018/ijoci.2016010102.
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Life is based on plants, They are the major source of oxygen, food, and medicines. And biology is one of the major research in last years, but scientists don't stop on studying the biological life and understanding different mechanisms in life, they go further by inspiring from it, as organization on bee colony. This last is very impressive, especially in workplace. This work presents a new approach of supervised plant leaves classification using a meta-heuristic algorithm based on social bees. First, the authors used to represent leaves using three different features extracted from images: a fine-scale margin feature histogram, a Centroid Contour Distance Curve shape signature, or an interior texture feature histogram. Then the authors classified vectors by artificial social bees, and they evaluated the classification by its accuracy and error.
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Tiwari, Pragya, Abhishek Sharma, Subir Kumar Bose, and Kyeung-Il Park. "Advances in Orchid Biology: Biotechnological Achievements, Translational Success, and Commercial Outcomes." Horticulturae 10, no. 2 (February 6, 2024): 152. http://dx.doi.org/10.3390/horticulturae10020152.
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Orchids constitute the largest and most diverse group of flowering plants and are classified in the family Orchidaceae. Exhibiting significance as the most exotic and ubiquitous flowering plant, the cultivation of orchids on a commercial level is gaining momentum worldwide. In addition to its ornamental and aesthetic value, the orchid industry has successfully generated employment for people in developing countries. Recent advances in biotechnological interventions in orchids have substantially contributed to the development of exotic varieties with novel traits, not to forget the inputs of traditional plant breeding methods and tissue culture approaches. In addition, the scientific developments in orchid biology have remarkably bridged the knowledge gaps in areas of orchid classification, phytochemistry, and cultivation strategies. This has facilitated the commercialization of novel varieties, opening new avenues in the orchid industry, and their global marketing as cut flowers and artificially propagated plants. Orchids constitute the first floriculture crops that revolutionized the orchid industry; however, they also hold several challenges in the natural propagation and conservation of several species that are on the verge of extinction. International organizations like CITES have come forward to address challenges associated with illegal global trade and indiscriminate use of orchid varieties, aiming for conservation and legal commercial goals. This thematic review is one-of-a-kind in providing comprehensive insights into the emerging momentum of orchid biology and how its globalization projects to considerably impact the orchid industry in the coming times. However, it is imperative to understand the challenges in the cultivation and conservation of orchid varieties and ensure legislative guidelines both on domestic and global levels to ensure a multipronged approach to the conservation and commercialization of orchids.
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Alexander, Jake M. "Evolution under changing climates: climatic niche stasis despite rapid evolution in a non-native plant." Proceedings of the Royal Society B: Biological Sciences 280, no. 1767 (September 22, 2013): 20131446. http://dx.doi.org/10.1098/rspb.2013.1446.
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A topic of great current interest is the capacity of populations to adapt genetically to rapidly changing climates, for example by evolving the timing of life-history events, but this is challenging to address experimentally. I use a plant invasion as a model system to tackle this question by combining molecular markers, a common garden experiment and climatic niche modelling. This approach reveals that non-native Lactuca serriola originates primarily from Europe, a climatic subset of its native range, with low rates of admixture from Asia. It has rapidly refilled its climatic niche in the new range, associated with the evolution of flowering phenology to produce clines along climate gradients that mirror those across the native range. Consequently, some non-native plants have evolved development times and grow under climates more extreme than those found in Europe, but not among populations from the native range as a whole. This suggests that many plant populations can adapt rapidly to changed climatic conditions that are already within the climatic niche space occupied by the species elsewhere in its range, but that evolution to conditions outside of this range is more difficult. These findings can also help to explain the prevalence of niche conservatism among non-native species.
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Tuma, RS, JA Stolk, and MB Roth. "Identification and characterization of a sphere organelle protein." Journal of Cell Biology 122, no. 4 (August 15, 1993): 767–73. http://dx.doi.org/10.1083/jcb.122.4.767.
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Sphere organelles are nuclear structures in amphibian oocytes that are easily visible by light microscopy. These structures are up to 10 microns in diameter and have been described morphologically for decades, yet their function remains obscure. The present study defines a protein component of the sphere organelle, named SPH-1, which is recognized by a mAb raised against purified Xenopus laevis oocyte nucleoplasm. SPH-1 is an 80-kD protein which is localized specifically to spheres and is undetectable elsewhere on lampbrush chromosomes or in nucleoli. We show using confocal microscopy that SPH-1 is localized to the cortex of sphere organelles. Furthermore, we have isolated a cDNA that can encode SPH-1. When epitope-tagged forms of SPH-1 are expressed in X. laevis oocytes the protein specifically localizes to spheres, demonstrating that the cloned cDNA encodes the sphere antigen. Comparison of the predicted amino acid sequence with sequence databases shows SPH-1 is related to p80-coilin, a protein associated with coiled bodies; coiled bodies are nuclear structures found in plant and animal cells. The sphere-specific mAb stains X. laevis tissue culture cells in a punctate nuclear pattern, showing that spheres or sphere antigens are present in somatic cells as well as germ cells and suggesting a general and essential function for spheres in all nuclei.
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Silva, Matheus R. e., Bruno C. Barbosa, and Ana Paula G. de Faria. "Reproductive biology and flower-visitor interactions of two bromeliad species from the Brazilian Atlantic Forest." Plant Ecology and Evolution 155, no. 1 (March 30, 2022): 16–28. http://dx.doi.org/10.5091/plecevo.84464.
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Background and aims – The Bromeliaceae family has great importance in the maintenance of neotropical communities. In the Brazilian Atlantic Forest, bromeliads are among the major groups responsible for maintaining the local flora and fauna and participate in important ecological interactions with insects, anurans, and hummingbirds. This work reports on aspects of the reproductive biology and the interactions between two endemic bromeliad species from the Atlantic Forest (Aechmea bruggeri and Quesnelia indecora) and their floral visitors to assess the impact of these relationships on the reproductive success and conservation of these plants.Material and methods – Reproductive phenology, floral biology, pollination experiments, and the reproductive success of both species were investigated. To determine the floral visitors, we made direct observations on flowers and collected floral visitors that could not be identified in the field.Key results – Aechmea bruggeri and Quesnelia indecora presented the individual and population flowering phenological pattern classified as annual with intermediate duration. The species are partially and totally self-incompatible, respectively. Both species presented a varied visitation guild, and although Q. indecora presented flowers with ornitofilous characteristics, no hummingbirds were recorded for this species. The hummingbird Thalurania glaucopis was the main visitor for Aechmea bruggeri and the bee Trigona cf. braueri was the main visitor for Quesnelia indecora. Nectar thieving by lepidopterans was observed for both species. Pollen robbing by beetles and nectar robbing by bees were registered for Aechmea bruggeri and Quesnelia indecora, respectively. Fruit and seed set of both species were highly affected by herbivory, which may negatively affect their reproductive success.Conclusion – Our work highlights the important role of bromeliads in neotropical communities, showing how floral visitors and plants interact by participating in maintaining biological diversity in the studied forest remnant.
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Adekiya, Aruna Olasekan, Christopher Muyiwa Aboyeji, Oluwagbenga Dunsin, Ojo Vincent Adebiyi, and Oreoluwa Titilope Oyinlola. "Effect of Urea Fertilizer and Maize Cob Ash on Soil Chemical Properties, Growth, Yield, and Mineral Composition of Okra, Abelmoschus esculentus (L.) MOENCH." Journal of Horticultural Research 26, no. 1 (June 1, 2018): 67–76. http://dx.doi.org/10.2478/johr-2018-0008.
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Abstract Field experiments were carried out at the Teaching and Research Farm, Landmark University, Omu-Aran, Kwara State, Nigeria, in the cropping seasons of 2015 and 2016. The soil at the site of the experiment is an Alfisol classified as an Oxichaplustalf or a Luvisol. The trial consisted of sole and combined applications of urea fertilizer (U) applied at 0, 60, and 120 kg·ha−1 and maize cob ash (M) applied at 0, 3, and 6 t·ha−1. The results showed that U and M alone or in combinations increased the soil chemical properties, growth, yield, and mineral composition of okra compared with the control. M alone at 3 t·ha−1 produced optimum soil chemical properties, yield, and mineral composition of okra fruit. U alone at 60 kg·ha−1 produced optimum yield of okra, while growth and mineral composition were increased when urea fertilizer was applied at 120 kg·ha−1. The treatment with U applied at 60 kg·ha−1 in combination with M applied at 3 t·ha−1 (U60M3) produced the highest values of okra yield, while U applied at 120 kg·ha−1 in combination with M applied at 3 t·ha−1 (U120M3) has the highest growth and highest N, K, Ca, Cu, and Fe contents of okra fruit. Compared with the control and using the mean of the two years, U60M3 increased okra fruit yield by 93.3%. Therefore, for viable production of okra in low nutrient soil of the Nigeria derived savanna or similar soils elsewhere, 60 kg·ha−1 U + 3 t·ha−1 M (U60M3) is recommended. However, for improved mineral quality of okra, 120 kg·ha−1 U + 3 t·ha−1 M (U120M3) is recommended.
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Crandall, I. E., and P. C. Newell. "Changes in cell surface glycoproteins during Dictyostelium development analysed using monoclonal antibodies." Development 107, no. 1 (September 1, 1989): 87–94. http://dx.doi.org/10.1242/dev.107.1.87.
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We have produced a series of monoclonal antibodies that recognize carbohydrate epitopes on cell surface glycoproteins of developing amoebae of Dictyostelium discoideum. The antibodies were found to have differential specificity for amoebae at different stages of development and were classified into types A to E on the basis of their temporal pattern of reactivity with the developing amoebal cell surface. Evidence from Western Blots and digestion of the glycoproteins with alkaline phosphatase were consistent with previous reports that the cell surface glycoproteins are extensively processed during development, leading at 16 h of development to the exposure of a highly antigenic core recognized by antibodies in group E. The nature of this core structure is indicated by the finding that antibodies in group E were found also to bind with high avidity to the plant glycoprotein horse radish peroxidase.
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Maghfiroh, Siti. "PERLAKUAN AKUNTANSI ASET BIOLOGIS BERDASARKAN IAS NO. 41 DAN PSAK NO. 69." El Muhasaba: Jurnal Akuntansi 8, no. 2 (April 18, 2018): 203. http://dx.doi.org/10.18860/em.v8i2.4975.
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The goal research is knowing biology asset accounting treatment in recognition, measurement, and display in financial statement and also to know comparison biology asset company accounting treatment based on Financial Accounting Standard, IAS 41 Agricultutreand PSAK 69 Agriculture. This research uses qualitative descriptive approach with case study approach that conducted in PT. Perkebunan Nusantara XII (Persero). This research is Ex Post Facto research that this goal research is to research event in the past and then trace to the back from that data to discover pre-factors or determine enable causes to event that researched. Research subject is PT. Perkebunan Nusantara XII (Persero). Research result shows that PT. Perkebunan Nusantara XII (Persero) that moves in plantation field recognize biology asset as plantation plant is classified to “immature plant” and “produce plant”. Biology asset is being measured by result cost and display in constant asset. PT. Perkebunan Nusantara XII (Persero) still doesn’t apply IAS 41 Agriculture and PSAK 69 Agriculture, depend on financial statement of company that measure biological asset in result cost with unproper price.
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Meidanis, Joao, Marilia D. V. Braga, and Sergio Verjovski-Almeida. "Whole-Genome Analysis of Transporters in the Plant Pathogen Xylella fastidiosa." Microbiology and Molecular Biology Reviews 66, no. 2 (June 2002): 272–99. http://dx.doi.org/10.1128/mmbr.66.2.272-299.2002.
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SUMMARY The transport systems of the first completely sequenced genome of a plant parasite, Xylella fastidiosa, were analyzed. In all, 209 proteins were classified here as constitutive members of transport families; thus, we have identified 69 new transporters in addition to the 140 previously annotated. The analysis lead to several hints on potential ways of controlling the disease it causes on citrus trees. An ADP:ATP translocator, previously found in intracellular parasites only, was found in X. fastidiosa. A P-type ATPase is missing—among the 24 completely sequenced eubacteria to date, only three (including X. fastidiosa) do not have a P-type ATPase, and they are all parasites transmitted by insect vectors. An incomplete phosphotransferase system (PTS) was found, without the permease subunits—we conjecture either that they are among the hypothetical proteins or that the PTS plays a solely metabolic regulatory role. We propose that the Ttg2 ABC system might be an import system eventually involved in glutamate import rather than a toluene exporter, as previously annotated. X. fastidiosa exhibits fewer proteins with ≥4 α-helical transmembrane spanners than any other completely sequenced prokaryote to date. X. fastidiosa has only 2.7% of all open reading frames identifiable as major transporters, which puts it as the eubacterium having the lowest percentage of open reading frames involved in transport, closer to two archaea, Methanococcus jannaschii (2.4%) and Methanobacterium thermoautotrophicum (2.4%).