Academic literature on the topic 'Phylogenetic analyses'
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Journal articles on the topic "Phylogenetic analyses"
Sanderson, Michael J., and H. Bradley Shaffer. "Troubleshooting Molecular Phylogenetic Analyses." Annual Review of Ecology and Systematics 33, no. 1 (November 2002): 49–72. http://dx.doi.org/10.1146/annurev.ecolsys.33.010802.150509.
Full textKuhn, Kristen L., and Thomas J. Near. "Phylogeny of Trematomus (Notothenioidei: Nototheniidae) inferred from mitochondrial and nuclear gene sequences." Antarctic Science 21, no. 6 (December 2009): 565–70. http://dx.doi.org/10.1017/s0954102009990253.
Full textLI, JIA-XIN, MAO-QIANG HE, and RUI-LIN ZHAO. "Three new species of Micropsalliota (Agaricaceae, Agaricales) from China." Phytotaxa 491, no. 2 (March 19, 2021): 167–76. http://dx.doi.org/10.11646/phytotaxa.491.2.6.
Full textMoore, Jenna M., Eijiroh Nishi, and Greg W. Rouse. "Phylogenetic analyses of Chaetopteridae (Annelida)." Zoologica Scripta 46, no. 5 (March 14, 2017): 596–610. http://dx.doi.org/10.1111/zsc.12238.
Full textMichu, E. "A short guide to phylogeny reconstruction." Plant, Soil and Environment 53, No. 10 (January 7, 2008): 442–46. http://dx.doi.org/10.17221/2194-pse.
Full textFarmer, Susan. "Phylogenetic Analyses and Biogeography of Trilliaceae." Aliso 22, no. 1 (2006): 579–92. http://dx.doi.org/10.5642/aliso.20062201.45.
Full textSullivan, Patrick S., and Alexandra M. Oster. "Phylogenetic analyses of local HIV transmission." Lancet HIV 5, no. 6 (June 2018): e270-e271. http://dx.doi.org/10.1016/s2352-3018(18)30101-2.
Full textSTUDLEY, WILLIAM KEITH, MUTSUO YAMAGUCHI, YOUSSEF HATEFI, and MILTON H. SAIER. "Phylogenetic Analyses of Proton-Translocating Transhydrogenases." Microbial & Comparative Genomics 4, no. 3 (January 1999): 173–86. http://dx.doi.org/10.1089/omi.1.1999.4.173.
Full textIrinyi, László, György Kövics, and Erzsébet Sándor. "Phylogenetic analysis of Phoma species." Acta Agraria Debreceniensis, no. 26 (July 16, 2007): 100–107. http://dx.doi.org/10.34101/actaagrar/26/3062.
Full textMortimer, Sebastian M. E., James Boyko, Jeremy M. Beaulieu, and David C. Tank. "Synthesizing Existing Phylogenetic Data to Advance Phylogenetic Research in Orobanchaceae." Systematic Botany 47, no. 2 (June 15, 2022): 533–44. http://dx.doi.org/10.1600/036364422x16512564801560.
Full textDissertations / Theses on the topic "Phylogenetic analyses"
Fujisawa, Tomochika. "Statistical analyses of genealogical-phylogenetic data." Thesis, Imperial College London, 2012. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.556548.
Full textBandoni, Susan Marie. "Phylogenetic analyses of the Amphilinidea and Gyrocotylidea : (Cercomeria: Brooks, 1982)." Thesis, University of British Columbia, 1985. http://hdl.handle.net/2429/24472.
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Zoology, Department of
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Thomas, Gavin Huw. "Sexual conflict, ecology and breeding systems in shorebirds : phylogenetic analyses." Thesis, University of Bath, 2004. https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.413066.
Full textDonati, Beatrice. "Graph models and algorithms in (co-)evolutionary contexts." Thesis, Lyon 1, 2014. http://www.theses.fr/2014LYO10235/document.
Full textIn the results presented in the present manuscripts, graph theory and combinatorial optimizationtecniques, have been used to model and solve biological problems. The manuscript is divided in twoparts, each one containing the mathematical and biological background of a given application and ouroriginal contributions to it.Part I groups a set of results designed for phylogenetics analysis, and in particular for reconstructingthe co-evolution of two groups of organisms (the so called co-phylogeny reconstruction problem).Although the addressed problem was treated in the available there was no method that solved suchproblem in a complete and efficient way. We thus developed and implemented a new one, calledEucalypt, with this purpose in mind. This not only provides a novel and usable software for cophylogenyreconstruction but also allows to investigate how the event-based model performs inpractice in terms of thenumber and quality of the solutions obtained. We compared our method to the available software. Bylooking at the results obtained, some interesting considerations about the advantages anddisadvantages of the commonly accepted mathematical model could be drawn. Finally, we introduceda new version of the problem where the host-switches are distance bounded: the k-bounded-All-MPRproblem. Eucalypt solves both problems in polynomial delay. These results have been accepted forpublication by the jounal Algorithms for Molecular Biology. The relative software is publicyavailable.Our studies show that the 'most parsimonious scenario' approach presents some limitationsthat cannot be ignored. To deal with these problems, we developed a second algorithm, called Coala,based on an approximate Bayesian computation approach for estimating the frequency of the events.The benefits of this method are twofold: it provides more confidence in the set of costs to be used in areconciliation, and it allows to estimate the frequency of the events in the cases where a reconciliationmethod cannot be applied. These results are currently under review by the jounal Systematic Biology.The relative software is publicy available.In Part 2 another set of studies is presented. Our original model for the contig scaffolding problem,and our algorithm MeDuSa, are presented and tested. Unlike traditional software, it does not rely eitheron paired-end information of sequencing reads or on a phylogenetic distance of the microorganismsused in the analysis. This drastically increases the usability of our software and, at the same time,reduces the computational time required for genome scaffolding. We show that the algorithmimplemented in MeDuSa, in most cases, is capable of producing less and longer scaffolds incomparison to commonly used scaffolders, while maintaining high accuracy and correctness of thepredicted joins. These results are currently under revision by the journal Bioinformatics.Finally, during the development of this method we encountered some pure theoretical open problemsand we decided to dedicate part of our job to their analysis. The last chapter is then dedicated to a setof problems, all related to the Implicit Hitting set enumeration problem. After some formal definitions,an original NP-completeness result is presented and the future directions of our work are described
Milton, Joseph J. "Phylogenetic analyses and taxonomic studies of Senecioninae : southern African Senecio section Senecio." Thesis, St Andrews, 2009. http://hdl.handle.net/10023/701.
Full textStaron, Anna. "Phylogenetic and functional analyses of stress-responsive bacterial transmembrane signal transducing systems." Diss., lmu, 2012. http://nbn-resolving.de/urn:nbn:de:bvb:19-149558.
Full textBorner, Janus [Verfasser], and Thorsten [Akademischer Betreuer] Burmester. "Molecular phylogenetic analyses of Ecdysozoa and Haemosporida / Janus Borner ; Betreuer: Thorsten Burmester." Hamburg : Staats- und Universitätsbibliothek Hamburg, 2017. http://d-nb.info/1140166573/34.
Full textLehmann, Jörg. "Relative Timing of Intron Gain and a New Marker for Phylogenetic Analyses." Doctoral thesis, Universitätsbibliothek Leipzig, 2014. http://nbn-resolving.de/urn:nbn:de:bsz:15-qucosa-144067.
Full textGarcia-Pena, Gabriel Ernesto. "Phylogenetic comparative analyses of breeding systems and life-history strategies in shorebirds." Thesis, University of Bath, 2010. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.527144.
Full textLong, Peter. "Ecological and life-history basis of wetland bird conservation : phylogenetic and spatial analyses." Thesis, University of Bath, 2008. https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.512313.
Full textBooks on the topic "Phylogenetic analyses"
Owen, Robert D. Phylogenetic analyses of the bat subfamily Stenodermatinae (Mammalia:Chiroptera). Lubbock, Tex: Texas Tech University Press, 1987.
Find full textSimone, Luiz Ricardo Lopes de. Phylogenetic analyses of Cerithioidea (Mollusca, Caenogastropoda) based on comparative morphology. São Paulo: Museu de Zoologia da Universidade de São Paulo, 2001.
Find full textCiochon, Russell L. Evolution of the cercopithecoid forelimb: Phylogenetic and functional implications from morphometric analyses. Berkeley: University of California Press, 1993.
Find full textWeksler, Marcelo. Phylogenetic relationships of oryzomine rodents (Muroidea, Sigmodontinae): Separate and combined analyses of morphological and molecular data. New York, NY: American Museum of Natural History, 2006.
Find full textVoss, Robert S. Phylogenetic studies on didelphid marsupials.: Separate and combined analyses of didelphine relationships with denser taxon samplings. New York, NY: American Museum of Natural History, 2003.
Find full textReitner, J. Coralline Spongien: Der Versuch einer phylogenetisch-taxonomischen Analyse = Coralline sponges : an attempt of a phylogenetic-taxonomic analysis. Berlin: Selbstverlag Fachbereich Geowissenschaften, 1992.
Find full textBasic phylogenetic combinatorics. New York: Cambridge University Press, 2011.
Find full textDuellman, William Edward. Frogs of the Hyla armata and the Hyla pulchella groups in the Andes of South America, with definitions and analyses of phylogenetic relationships of Andean groups of Hyla. Lawrence, Kan: Natural History Museum, The University of Kansas, 1997.
Find full textJ, Wiens John, ed. Phylogenetic analysis of morphological data. Washington, D.C: Smithsonian Institution Press, 2000.
Find full textInc, ebrary, ed. Phylogenetics: Theory and practice of phylogenetics systematics. 2nd ed. Hoboken, N.J: Wiley-Blackwell, 2011.
Find full textBook chapters on the topic "Phylogenetic analyses"
Bleidorn, Christoph. "Phylogenetic Analyses." In Phylogenomics, 143–72. Cham: Springer International Publishing, 2017. http://dx.doi.org/10.1007/978-3-319-54064-1_8.
Full textGoloboff, Pablo A. "Summarizing and comparing phylogenetic trees." In Refining Phylogenetic Analyses, 1–51. Boca Raton: CRC Press, 2022. http://dx.doi.org/10.1201/9780367823412-1.
Full textGoloboff, Pablo A. "Measuring degree of group support." In Refining Phylogenetic Analyses, 119–83. Boca Raton: CRC Press, 2022. http://dx.doi.org/10.1201/9780367823412-3.
Full textGoloboff, Pablo A. "Morphometric characters." In Refining Phylogenetic Analyses, 185–227. Boca Raton: CRC Press, 2022. http://dx.doi.org/10.1201/9780367823412-4.
Full textGoloboff, Pablo A. "Scripting." In Refining Phylogenetic Analyses, 229–68. Boca Raton: CRC Press, 2022. http://dx.doi.org/10.1201/9780367823412-5.
Full textGoloboff, Pablo A. "Character weighting." In Refining Phylogenetic Analyses, 53–117. Boca Raton: CRC Press, 2022. http://dx.doi.org/10.1201/9780367823412-2.
Full textFraix-Burnet, Didier. "First Phylogenetic Analyses of Galaxy Evolution." In Astrophysics and Space Science Library, 301–5. Dordrecht: Springer Netherlands, 2004. http://dx.doi.org/10.1007/978-1-4020-2862-5_27.
Full textSantos, Juan C. "Phylogenetic Analyses of Chemokine Receptors from Sequence Retrieval to Phylogenetic Trees." In Methods in Molecular Biology, 313–43. New York, NY: Springer US, 2020. http://dx.doi.org/10.1007/978-1-0716-0247-8_27.
Full textMay-Collado, Laura J., Carlos Zambrana-Torrelio, and Ingi Agnarsson. "Global Spatial Analyses of Phylogenetic Conservation Priorities for Aquatic Mammals." In Biodiversity Conservation and Phylogenetic Systematics, 305–18. Cham: Springer International Publishing, 2016. http://dx.doi.org/10.1007/978-3-319-22461-9_15.
Full textSen, Gao, Yuan Zihao, Ning Li, Jiaren Zhang, and Zhanjiang Liu. "Determining Sequence Identities: BLAST, Phylogenetic Analysis, and Syntenic Analyses." In Bioinformatics in Aquaculture, 30–42. Chichester, UK: John Wiley & Sons, Ltd, 2017. http://dx.doi.org/10.1002/9781118782392.ch2.
Full textConference papers on the topic "Phylogenetic analyses"
Limbeck, Maggie R., Colin D. Sumrall, and Bradley Deline. "PHYLOGENETIC AND MORPHOLOGIC ANALYSES ELUCIDATE RELATIONSHIPS IN PARACRINOIDEA (ECHINODERMATA)." In 67th Annual Southeastern GSA Section Meeting - 2018. Geological Society of America, 2018. http://dx.doi.org/10.1130/abs/2018se-312231.
Full textEly, Ricardo Carlos. "PHYLOGENETIC AND GEOMETRIC MORPHOMETRIC ANALYSES OF LYGOSOMINE SKINK MANDIBLES." In GSA Annual Meeting in Indianapolis, Indiana, USA - 2018. Geological Society of America, 2018. http://dx.doi.org/10.1130/abs/2018am-322579.
Full textBrammer, Grant, and Tiffani L. Williams. "Using decision trees to study the convergence of phylogenetic analyses." In 2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB). IEEE, 2010. http://dx.doi.org/10.1109/cibcb.2010.5510326.
Full textHaiyan Li. "Predicting protein folding cores based on complex network and phylogenetic analyses." In 2009 International Conference on Future BioMedical Information Engineering (FBIE). IEEE, 2009. http://dx.doi.org/10.1109/fbie.2009.5405844.
Full textSaporetti, Camila M., Leonardo Goliatt, Leonardo C. De Oliveira, and Egberto Pereira. "Computational Intelligence Techniques and Phylogenetic Trees for Identification of Sedimentary Petrofacies." In XV Encontro Nacional de Inteligência Artificial e Computacional. Sociedade Brasileira de Computação - SBC, 2018. http://dx.doi.org/10.5753/eniac.2018.4437.
Full textOikkonen, Jaana, Nil Campamà Sanz, Antti Häkkinen, Yilin Li, Ingrid Schulman, Mikko Kivikoski, Kaisa Huhtinen, et al. "Abstract A60: Phylogenetic analyses reveal variable patterns of tumor evolution in HGSOC." In Abstracts: AACR Special Conference on Advances in Ovarian Cancer Research; September 13-16, 2019; Atlanta, GA. American Association for Cancer Research, 2020. http://dx.doi.org/10.1158/1557-3265.ovca19-a60.
Full textNishimura, Yuki, Toshiyuki Amagasa, Yuji Inagaki, Tetsuo Hashimoto, and Hiroyuki Kitagawa. "A System for Phylogenetic Analyses over Alignments of Next Generation Sequence Data." In 2016 10th International Conference on Complex, Intelligent, and Software Intensive Systems (CISIS). IEEE, 2016. http://dx.doi.org/10.1109/cisis.2016.51.
Full textFedonenko, Yu P., I. M. Ibrahim, E. N. Sigida, V. I. Safronova, M. S. Kokoulin, A. Yu Muratova, and S. A. Konnova. "Bioremediation potential of a halophilic bacterium Chromohalobacter salexigens EG1QL3: exopolysaccharide production, crude oil degradation, and heavy metal tolerance." In 2nd International Scientific Conference "Plants and Microbes: the Future of Biotechnology". PLAMIC2020 Organizing committee, 2020. http://dx.doi.org/10.28983/plamic2020.070.
Full textMcClure, Sheila, Jenna T. Baughman, Jess Pelaez, and Justin R. Pardo. "PRELIMINARY GEOHYDROLOGIC APPLICATIONS OF SPATIAL PHYLOGENETIC BIODIVERSITY ANALYSES IN THE MOJAVE NATIONAL PRESERVE." In GSA Annual Meeting in Denver, Colorado, USA - 2016. Geological Society of America, 2016. http://dx.doi.org/10.1130/abs/2016am-283455.
Full textZhang, Yunfeng, Yang Zhang, and Mingzhu Yang. "Investigating Cultural Macroevolution through Biological Phylogenetic Analyses of Chinese Dai People Costumes Pattern." In 2015 International Conference on Social Science, Education Management and Sports Education. Paris, France: Atlantis Press, 2015. http://dx.doi.org/10.2991/ssemse-15.2015.24.
Full textReports on the topic "Phylogenetic analyses"
Perk, Shimon, Maricarmen Garcia, Alexander Panshin, Caroline Banet-Noach, Irina Gissin, Mark W. Jackwood, and David Stallknecht. Avian Influenza Virus H9N2: Characterization and Control Strategies. United States Department of Agriculture, June 2007. http://dx.doi.org/10.32747/2007.7709882.bard.
Full textPace, Norman R. Phylogenetic Analysis of Marine Picoplankton Using rRNA Sequences. Fort Belvoir, VA: Defense Technical Information Center, June 1989. http://dx.doi.org/10.21236/ada209595.
Full textPace, Norman R. Phylogenetic Analysis of Marine Picoplankton Using Tau RNA Sequences. Fort Belvoir, VA: Defense Technical Information Center, February 1991. http://dx.doi.org/10.21236/ada254451.
Full textBiffinger, Justin C., Lisa A. Fitzgerald, Emily R. Petersen, Kristina M. Myers, Jeffrey A. Cramer, Anthony P. Malanoski, Tyler M. Huggins, and Robert E. Morris. Analysis of Fatty Acid and Growth Profiles in Ten Shewanella spp. to Associate Phylogenetic Relationships. Fort Belvoir, VA: Defense Technical Information Center, October 2015. http://dx.doi.org/10.21236/ad1000479.
Full textMichel Jr., Frederick C., Harry A. J. Hoitink, Yitzhak Hadar, and Dror Minz. Microbial Communities Active in Soil-Induced Systemic Plant Disease Resistance. United States Department of Agriculture, January 2005. http://dx.doi.org/10.32747/2005.7586476.bard.
Full textPace, N. R. Phylogenetic analysis of hyperthermophilic natural populations using ribosomal RNA sequences. Final report, July 15, 1995--July 14, 1996. Office of Scientific and Technical Information (OSTI), June 1997. http://dx.doi.org/10.2172/491420.
Full textWu, Liyou, T. Y. Yi, Joy Van Nostrand, and Jizhong Zhou. Phylogenetic Analysis of Shewanella Strains by DNA Relatedness Derived from Whole Genome Microarray DNA-DNA Hybridization and Comparison with Other Methods. Office of Scientific and Technical Information (OSTI), May 2010. http://dx.doi.org/10.2172/986917.
Full textMizrahi, Itzhak, and Bryan A. White. Uncovering rumen microbiome components shaping feed efficiency in dairy cows. United States Department of Agriculture, January 2015. http://dx.doi.org/10.32747/2015.7600020.bard.
Full textPerl-Treves, Rafael, M. Kyle, and Esra Galun. Development and Application of a Molecular Genetic Map for Melon (Cucumis melo). United States Department of Agriculture, October 1993. http://dx.doi.org/10.32747/1993.7568094.bard.
Full textVakharia, Vikram, Shoshana Arad, Yonathan Zohar, Yacob Weinstein, Shamila Yusuff, and Arun Ammayappan. Development of Fish Edible Vaccines on the Yeast and Redmicroalgae Platforms. United States Department of Agriculture, February 2013. http://dx.doi.org/10.32747/2013.7699839.bard.
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