Academic literature on the topic 'Phenix Bank'

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Journal articles on the topic "Phenix Bank"

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Liebschner, Dorothee, Pavel V. Afonine, Nigel W. Moriarty, Billy K. Poon, Vincent B. Chen, and Paul D. Adams. "CERES: a cryo-EM re-refinement system for continuous improvement of deposited models." Acta Crystallographica Section D Structural Biology 77, no. 1 (January 1, 2021): 48–61. http://dx.doi.org/10.1107/s2059798320015879.

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The field of electron cryomicroscopy (cryo-EM) has advanced quickly in recent years as the result of numerous technological and methodological developments. This has led to an increase in the number of atomic structures determined using this method. Recently, several tools for the analysis of cryo-EM data and models have been developed within the Phenix software package, such as phenix.real_space_refine for the refinement of atomic models against real-space maps. Also, new validation metrics have been developed for low-resolution cryo-EM models. To understand the quality of deposited cryo-EM structures and how they might be improved, models deposited in the Protein Data Bank that have map resolutions of better than 5 Å were automatically re-refined using current versions of Phenix tools. The results are available on a publicly accessible web page (https://cci.lbl.gov/ceres). The implementation of a Cryo-EM Re-refinement System (CERES) for the improvement of models deposited in the wwPDB, and the results of the re-refinements, are described. Based on these results, contents are proposed for a `cryo-EM Table 1', which summarizes experimental details and validation metrics in a similar way to `Table 1' in crystallography. The consistent use of robust metrics for the evaluation of cryo-EM models and data should accompany every structure deposition and be reported in scientific publications.
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Kowiel, Marcin, Dariusz Brzezinski, Miroslaw Gilski, and Mariusz Jaskolski. "Conformation-dependent restraints for polynucleotides: the sugar moiety." Nucleic Acids Research 48, no. 2 (December 4, 2019): 962–73. http://dx.doi.org/10.1093/nar/gkz1122.

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Abstract Stereochemical restraints are commonly used to aid the refinement of macromolecular structures obtained by experimental methods at lower resolution. The standard restraint library for nucleic acids has not been updated for over two decades and needs revision. In this paper, geometrical restraints for nucleic acids sugars are derived using information from high-resolution crystal structures in the Cambridge Structural Database. In contrast to the existing restraints, this work shows that different parts of the sugar moiety form groups of covalent geometry dependent on various chemical and conformational factors, such as the type of ribose or the attached nucleobase, and ring puckering or rotamers of the glycosidic (χ) or side-chain (γ) torsion angles. Moreover, the geometry of the glycosidic link and the endocyclic ribose bond angles are functionally dependent on χ and sugar pucker amplitude (τm), respectively. The proposed restraints have been positively validated against data from the Nucleic Acid Database, compared with an ultrahigh-resolution Z-DNA structure in the Protein Data Bank, and tested by re-refining hundreds of crystal structures in the Protein Data Bank. The conformation-dependent sugar restraints presented in this work are publicly available in REFMAC, PHENIX and SHELXL format through a dedicated RestraintLib web server with an API function.
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Jones, Laurel, Michael Tynes, and Paul Smith. "Prediction of models for ordered solvent in macromolecular structures by a classifier based upon resolution-independent projections of local feature data." Acta Crystallographica Section D Structural Biology 75, no. 8 (July 30, 2019): 696–717. http://dx.doi.org/10.1107/s2059798319008933.

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Current software tools for the automated building of models for macromolecular X-ray crystal structures are capable of assembling high-quality models for ordered macromolecule and small-molecule scattering components with minimal or no user supervision. Many of these tools also incorporate robust functionality for modelling the ordered water molecules that are found in nearly all macromolecular crystal structures. However, no current tools focus on differentiating these ubiquitous water molecules from other frequently occurring multi-atom solvent species, such as sulfate, or the automated building of models for such species. PeakProbe has been developed specifically to address the need for such a tool. PeakProbe predicts likely solvent models for a given point (termed a `peak') in a structure based on analysis (`probing') of its local electron density and chemical environment. PeakProbe maps a total of 19 resolution-dependent features associated with electron density and two associated with the local chemical environment to a two-dimensional score space that is independent of resolution. Peaks are classified based on the relative frequencies with which four different classes of solvent (including water) are observed within a given region of this score space as determined by large-scale sampling of solvent models in the Protein Data Bank. Designed to classify peaks generated from difference density maxima, PeakProbe also incorporates functionality for identifying peaks associated with model errors or clusters of peaks likely to correspond to multi-atom solvent, and for the validation of existing solvent models using solvent-omit electron-density maps. When tasked with classifying peaks into one of four distinct solvent classes, PeakProbe achieves greater than 99% accuracy for both peaks derived directly from the atomic coordinates of existing solvent models and those based on difference density maxima. While the program is still under development, a fully functional version is publicly available. PeakProbe makes extensive use of cctbx libraries, and requires a PHENIX licence and an up-to-date phenix.python environment for execution.
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Westbrook, John, Zukang Feng, Swanand Gore, Cathy Lawson, Tom Oldfield, Martha Quesada, Sanchayita Sen, Sameer Velankar, Huanwang Yang, and Jasmine Young. "The New wwPDB Deposition and Annotation System." Acta Crystallographica Section A Foundations and Advances 70, a1 (August 5, 2014): C1682. http://dx.doi.org/10.1107/s205327331408317x.

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In anticipation of continued growth in the number, size and complexity of the structures that are being studied and deposited in the PDB and EMDB, the Worldwide Protein Data Bank (wwPDB) has developed a new system for deposition and annotation of structural data. The new wwPDB Deposition & Annotation (D&A) system offers a single entry point for depositors from around the world to deposit X-ray, NMR, 3DEM data, receive detailed validation feedback, and preview annotations, all prior to submission. The system will assign not only PDB identifiers upon submission, but also EMDB and BMRB identifiers for 3DEM and NMR data, respectively. Furthermore, the new system is used at all wwPDB processing sites around the globe. After deposition, wwPDB annotators use the system for sequence annotation, ligand annotation, additional structure analysis and validation, and review. Validation functionality implements recommendations from the wwPDB X-ray Validation Task Force and produces a structure validation report for depositor review and submission to scientific journals. Depositors will have the option to use the new system or one of the legacy deposition tools (ADIT, AutoDep) through the end of 2014. At that time, the legacy tools will stop accepting new entries, and will only be available for a limited period of time to complete in-progress deposition sessions. An important feature of the new deposition system is its ability to accept and produce data in PDBx/mmCIF format, which has no limitations in the size or complexity of structures that can be represented. The PDBx/mmCIF Working Group, consisting of software developers from CCP4, Global Phasing Ltd., Phenix, and the wwPDB, have adapted structure determination software packages to produce PDBx/mmCIF format files suitable for deposition. The new wwPDB deposition and annotation will produce more consistent and higher quality archive entries, and will improve the efficiency and throughput of deposition and annotation. The modular design of the system will facilitate incorporating new functionalities and support for hybrid and other methods in the future. wwPDB members are RCSB PDB (supported by NSF, NIH, and DOE), PDBe (EMBL-EBI, Wellcome Trust, BBSRC, NIGMS, and EU), PDBj (NBDC-JST) and BMRB (NLM).
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McCumber, Michael P. "Back-to-back pair suppression at large transverse momentum in Au + Au collisions at PHENIX." Nuclear Physics A 855, no. 1 (April 2011): 408–11. http://dx.doi.org/10.1016/j.nuclphysa.2011.02.092.

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Anderson, Chris K., and Saram Han. "Living Without OTAs—Goodbye Columbus: Putting the Jenie Back in the Bottle." Cornell Hospitality Quarterly 59, no. 1 (November 17, 2017): 67–69. http://dx.doi.org/10.1177/1938965517735907.

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A recent Cornell Hospitality Quarterly article highlighted a unique natural experiment where an entire city had all its hotel delisted from all online travel agents for more than 4 years. The article provides great background to the delisting and highlights the impacts on hotel revenue and accommodation taxes for the county. The article estimates that even though the hotels relisted at all online travel agents (OTAs), there was a substantial gain to both hotels and accommodation tax collectors during the OTA delisting period. The impact estimates are based solely on the loss of demand realized in neighboring Phenix City, AL, once Columbus is relisted at OTAs. In the following, we highlight some concerns with these estimates and indicate that the losses may in fact be quite substantive and perhaps more indicative of why Columbus hotels relisted at the OTAs.
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Sofyan, Hamny, Noni Zakiah, Hasriati Hasriati, Frengki Frengki, Taufan Hidayat, and Siti Aisyah. "Polimorfisme Gen Aquaporin-3 dan Pengaruhnya Terhadap Ikatan dengan Ligand Uji Secara In Silico." Jurnal Veteriner 23, no. 2 (June 30, 2022): 157–65. http://dx.doi.org/10.19087/jveteriner.2022.23.2.157.

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Perubahan kode genetik dapat menjadi pemicu perubahan fungsi protein yang dihasilkannya. Perubahan genetik yang umum terjadi berupa single nucleotide polymorphism (SNP) seperti pada gen kelompok aquaporin (AQPs) yang berperan penting untuk menjaga kelembapan dan elastisitas epidermis kulit. Penelitian ini bertujuan menganalisis pengaruh mutasi pada salah satu kelompok protein AQPs yaitu aquaporin 3 (AQP3) secara in silico. Materi penelitian berupa data sequence dan struktur 3D AQP3 wild-type dan AQP3 mutant yang diunduh dari protein data bank (pdb id 1FX8 dan 1LDF). Kedua sequence ini disejajarkan dengan metode “ClustalW” untuk mengamati posisi mutasi, sedangkan struktur 3D keduanya juga disejajarkan menggunakan metode “Aligment” untuk mengamati perubahan daerah “site binding” native ligand. Dampak perubahan konformasi AQP3 mutant juga diamati terhadap beberapa senyawa sebagai ligand uji yang diketahui bekerja mendukung fungsi protein AQP3 seperti asiatic acid, madecassic acid, asiaticoside, dan alpha-retinoic acid melalui metode docking molekuler. Hasil pensejajaran sequence menunjukkan mutasi terjadi pada urutan residu ke-48 (tryptophan-phenil alanin) dan ke-200 (phenil alanin-threonine). Mutasi kedua residu menyebabkan terjadinya perubahan model interaksi semua ligand uji dibanding AQP3 tipe normal. Mutasi juga menyebabkan penurunan stabilitas AQP3. Namun, sebaliknya tidak menyebabkan fungsi AQP3 berubah tetapi hanya menurunkan kemampuan pengikatan molekul native ligand yang berimplikasi pada penurunan kemampuan pengikatan molekul air, gliserol dan ligan uji.
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Zass, Lyndon, Katherine Johnston, Alia Benkahla, Melek Chaouch, Judit Kumuthini, Fouzia Radouani, Liberata Alexander Mwita, et al. "Developing Clinical Phenotype Data Collection Standards for Research in Africa." Global Health 2023 (September 19, 2023): 1–9. http://dx.doi.org/10.1155/2023/6693323.

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Modern biomedical research is characterised by its high-throughput and interdisciplinary nature. Multiproject and consortium-based collaborations requiring meaningful analysis of multiple heterogeneous phenotypic datasets have become the norm; however, such analysis remains a challenge in many regions across the world. An increasing number of data harmonisation efforts are being undertaken by multistudy collaborations through either prospective standardised phenotype data collection or retrospective phenotype harmonisation. In this regard, the Phenotype Harmonisation Working Group (PHWG) of the Human Heredity and Health in Africa (H3Africa) consortium aimed to facilitate phenotype standardisation by both promoting the use of existing data collection standards (hosted by PhenX), adapting existing data collection standards for appropriate use in low- and middle-income regions such as Africa, and developing novel data collection standards where relevant gaps were identified. Ultimately, the PHWG produced 11 data collection kits, consisting of 82 protocols, 38 of which were existing protocols, 17 were adapted, and 27 were novel protocols. The data collection kits will facilitate phenotype standardisation and harmonisation not only in Africa but also across the larger research community. In addition, the PHWG aims to feed back adapted and novel protocols to existing reference platforms such as PhenX.
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L, Lianah. "EFEKTIVITAS PEMANFAATAN PUPUK BOKASI, CASTING DAN PUPUK GENDONING (LARVA KUMBANG KELAPA/Orcyctes rhinoceros)." Phenomenon : Jurnal Pendidikan MIPA 1, no. 2 (March 8, 2016): 19. http://dx.doi.org/10.21580/phen.2011.1.2.429.

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<div class="Section1"><p>Kotoran hewan dan sampah organik dapat mencemari di lingkungan air, udara dan tanah. Penelitian ini bertu- juan untuk membandingkn keefektifan antara pupuk gen- doning dan pupuk bokashi. Proses pengomposan dapat dipercepat dengan bantuan aktifator EM4 (Efektif Mik- roorganisme). Proses pengomposan tersebut juga dapat melibatkan hewan lain yaitu Cacing tanah dan larva kum- bang kelapa (Orcyctes rhinoceros) yang disebut dengan nama gendon (bahasa Jawa) yang bekerja sama dengan mikroba dalam proses dekomposer. Gendon dalam hal ini memakan bahan organik yang tidak terurai, mencampur bahan organik dan membuat lubang-lubang aerasi. Keha- diran gendon dapat mempercepat penghancuran bahan or- ganik karena mempunyai mulut yang tajam sebagai mesin pencacah sampah organik. Metode penelitian eksperimen sampah organik ditreatmen yaitu dengan menggunakan EM4, dan dengan menggunakan gendon. Peruraian oleh EM4 disebut pupuk Bokashi. Sedang keterlibatan gendon dalam proses pengomposan menghasilkan butir-butir kecil berwarna hitam dinamakan pupuk Gendoning (penemuan pribadi). Dari kedua pupuk tersebut dipraktekan untuk menanam labu air (Lagenaria leucantha). Dari experimen tersebut dapat diketahui bahwa pupuk gendoning ini ter- bukti lebih efektif dan efisien dari pupuk bokashi, karena gendon mampu melakukan dekomposisi lebih sempurna dari EM4. Dekomposisi tersebut dilakukan baik secara me- kanik maupun secara enzimatis. Pupuk gendoning adalah hasil bioteknologi sederhana yang dapat menjadi alternatif dalam mengatasi kelangkaan pupuk, sebagai pupuk organ- ik yang efektif dan efisien serta bernilai ekonomis sebagai.</p></div>
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Sri Hartati, Hernnie Rahayu,. "PENINGKATAN KUALITAS PEMBELAJARAN IPA MELALUI STRATEGI BELAJAR PQ4R BERBANTUAN MEDIA POWERPOINT." Phenomenon : Jurnal Pendidikan MIPA 6, no. 1 (July 17, 2016): 35. http://dx.doi.org/10.21580/phen.2016.6.1.943.

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Tujuan penelitian ini untuk meningkatkan kualitas pembelajaran IPA melalui strategi belajar <em>PQ4R </em>dengan media <em>powerpoint</em>. Desain penelitian ini menggunakan penelitian tindakan kelas yang berlangsung dalam tiga siklus meliputi tahap perencanaan, pelaksanaan, observasi, dan refleksi. Subjek penelitian ini adalah guru dan siswa SD Tunas Harum Bangsa Kota Semarang. Teknik pengumpulan data menggunakan tes dan non tes. Data dianalisis menggunakan teknik analisis deskriptif kuantitatif dan kualitatif. Hasil penelitian menunjukkan bahwa: (1) keterampilan guru pada siklus I mendapat skor 24 dengan kategori baik, pada siklus II mendapat skor 27 dengan kategori sangat baik, meningkat pada siklus III dengan skor 31 dengan kategori sangat baik, (2) aktivitas siswa pada siklus I mendapat skor 20,58 dengan kategori baik, pada siklus II mendapat skor 24,5 dengan kategori baik, meningkat menjadi 31,2 pada siklus III dengan kategori baik, (3) respon siswa pada siklus I sebesar 83,95% dengan kategori respon sangat positif, pada siklus II respon siswa sebesar 90,59%, meningkat pada siklus III dengan respon 100% dengan kategori respon sangat positif, (4) hasil belajar siswa pada siklus I mengalami ketuntasan klasikal sebesar 57,1% dengan kategori kurang, siklus II mengalami ketuntasan klasikal sebesar 71,4% dengan kategori cukup, dan mengalami peningkatan pada siklus III menjadi 92,85% dengan kategori sangat baik dari jumlah siswa. Simpulan dalam penelitian ini adalah melalui strategi belajar <em>PQ4R</em> dengan media <em>powerpoint </em>dapat meningkatkan kualitas pembelajaran IPA yang meliputi keterampilan guru, aktivitas siswa, respon siswa dan hasil belajar siswa.
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Dissertations / Theses on the topic "Phenix Bank"

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Amen-Chen, Carlos. "Softwood bark vacuum pyrolysis oils-phenol-formaldehyde resols for bonding oriented strandboard (OSB)." Thesis, National Library of Canada = Bibliothèque nationale du Canada, 2001. http://www.collectionscanada.ca/obj/s4/f2/dsk3/ftp04/NQ57954.pdf.

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Karlsson, Maria. "Quantum Chemical Investigations of Phenol and Larger Aromatic Molecules on TiO2 Surface." Thesis, Linköping University, The Department of Physics, Chemistry and Biology, 2004. http://urn.kb.se/resolve?urn=urn:nbn:se:liu:diva-2715.

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Adsorption of organic molecules at a surface of titanium dioxide (101) anatase is studied using quantum-chemical density functional theory. Anatase can be used in solar cells. For the clean anatase surface the band gap is so large that only UV-light can excite electrons. Different groups with conjugated systems are attached to obtain a more suitable band gap.

Phenol was attached in different positions to a cluster of anatase and geometry optimized using the B3LYP-functional. The geometry that was energetically most favorable was used to put in phenylmethanol, phenylethanol, naphthol, 2-phenanthrol, 1-pyrol and 2-perylol. To give a more realistic model of phenol at anatase, a study of a two- dimensional periodic anatase surface was also made.

Molecular orbitals were calculated to study the overlap between HOMO and LUMO orbitals. The calculation shows that phenol will remain as a molecule and will not dissociate. The band gap gets smaller when molecules are attached at the cluster and with 2-perylol it reaches the energy of visible light.

The molecular orbitals for HOMO, LUMO and LUMO of the adsorbed molecule were investigated. HOMO was localized at the molecule, LUMO at the cluster and LUMO of the adsorbed molecule move closer to the energy of LUMO when the number of rings increases.

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Vienola, Sari. "Lakningsförsök med furubarksflis : en utredning om utsläpp av fenolföreningar samt metallsorption." Thesis, Mälardalen University, Department of Public Technology, 2007. http://urn.kb.se/resolve?urn=urn:nbn:se:mdh:diva-597.

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The filters used today to purify water are often expensive and the need to find new filter materials is substantial. Studies of pine bark have shown that this is a material that may be used as an alternative to conventional filter materials, such as activated carbon. However, the study of pine bark has shown that a leakage of phenolic compounds may occur when using the material for water purification. Therefore, the purpose of this report is to investigate the release of phenols from pine bark, in order to evaluate the use of pine bark as a filter material. Another assignment is to investigate the amount of metals adsorbed by the filter material. The studies were carried out through three leaching experiments. As leachates, double deionised water and storm water were used. The phenol concentration in the leachate was determined for both double deionised water and storm water. The degree of metal sorption was measured only for the storm water. The measured phenol concentration in the double deionised water was 4.40 mg/L and in the storm water 4.81 mg/L. These concentrations exceed the Canadian guideline value, of 4.0 μg/L, more than a 1000 times. No metal sorption occurred as the metal content of the storm water was too low. Instead a release of metals from the pine bark into the eluate of the storm water occurred. The leaching attempts also resulted in a decline of the pH-values of the two different waters. The pH-values for the double deionised water and the storm water decreased from 7.0 to 4.3 and from 6.0 to 4.2 respectively. A release of phenols was ascertained with a significant difference in concentrations between double deionised water and storm water. Therefore it is not advisable to use pine bark filters for purification of water with low concentrations of metals, as the filter material may release metals into the water under such conditions.

Keywords: pine bark, phenol, filter materials, leaching, metal sorption, toxicity

Nyckelord: furubarksflis, fenol, filtermaterial, lakning, metallsorption, toxicitet

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Houwaart, Torsten. "Cobalt porphyrins on coinage metal surfaces - adsorption and template properties." Thesis, Lyon, École normale supérieure, 2014. http://www.theses.fr/2014ENSL0927.

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Cette thèse est une étude théorique sur la interface de porphyrine de cobalt avec des surfaces métalliques avec le code VASP DFT. Le cadre DFT nécessaire a été introduit dans le chapitre 1. La structure de la jBardeen, une programme ecrit en Java, pour la simulation de la STM est expliqué dans le chapitre 2 et le code source est jointe en annexe. Une étude de l'adsorption de CoTPP sur les surfaces métalliques a été entrepris dans le chapitre 3. Différents paramètres de calcul ont été évalués: Le site d'adsorption et de la géométrie à la fois la molécule et la surface ont été étudiés par rapport à la xc-fonctionnel et correction de la dispersion utilisée. Une adsorption site le plus stable est identifié. Par conséquent, ce site plus stable a été étudiée pour sa structure électronique. Calculés images STM avec le code jBardeen ont été comparés avec une experimentation de CoTPP Cu sur une surface (111) avec une couverture sous monocouche. Dans le chapitre 4, un adatome Fe a été présenté à la CoTPP sur Ag système (111). Trois sites de liaison symétrique différentes pour l'atome Fe ont été identifiés sur le macrocycle, marqué les , bi-, brd- et bru-positions. Un moment magnétique pouvait être attestée qui a été principalement situé sur l'atome Fe. Voies possibles entre les quatre, symétriquement équivalentes, sites bi- ont été étudiées avec des méthodes différentes. Simples calculs dans le vacuum et calculs de la “Nudged Elastic Band” (NEB) de l'ensemble du système a révélé une hauteur de barrière légèrement au-dessus de 0,2 eV allant de position bi à la posititon brd. Une analyse de vibration a montré que la commutation de l'atome Fe est susceptible, lorsqu'il est perturbé hors d'équilibre dans les positions brd et bru
This thesis is a theoretical study on the cobalt porphyrin - coinage metal surface interface with the DFT code VASP. The necessary DFT framework has been introduced in chapter 1. The structure of the Java program jBardeen for STM simulation is explained in chapter 2 and the source code is attached as Appendix. A study of the adsorption of CoTPP on coinage metal surfaces has been undertaken in chapter 3. Different parameters of the calculation have been evaluated: the adsorption site and the geometry of both the molecule and surface have been investigated with respect to the xc-functional and dispersion correction used. A most stable adsorption site -bridge down- is identified. Consequently, this most stable site was investigated for its electronic structure. Calculated STM images with the jBardeen code were compared with an experiment of CoTPP on a Cu(111) surface with sub monolayer coverage. In chapter 4 an Fe adatom was introduced to the CoTPP on Ag(111) system. Three symmetrically different binding sites for the Fe atom were identified on the macrocycle, labelled the bi-, brd- and bru-positions for bisector, bridge down and bridge up respectively. A magnetic moment could be evidenced which was mainly located on the Fe atom. Possible pathways between the four symmetrically equivalent bisector sites were investigated with different methods. Single point calculations in vacuum and Nudged Elastic Band (NEB) of the whole system revealed a barrier height of slightly above 0.2 eV going from bi- to the brd-position. A vibrational analysis showed that switching of the Fe atom is likely, when perturbed out of equilibrium in the brd- and bru- positions
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Lan, Wei-chuan, and 藍偉銓. "Cold-Setting Adhesives made from Copolymerization of Bark Extractives with Phenol and Resorcinol." Thesis, 2003. http://ndltd.ncl.edu.tw/handle/82939865089481462277.

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碩士
國立中興大學
森林學系
91
In this study, the feasibilities of the manufacture of cold-setting RTF、PRTF and PTF resins prepared from copolymerization of barks (acacia and China fir), phenol, resorcinol and formaldehyde were investigated. In addition to the effect of synthetic condition on the properties and bonding strength of synthetic resins and the curing behavior of copolymer resins were analyzed through differential scanning calorimetry(DSC), and the molecular bond structure was analyzed through Fourier transform infrared spectroscope(FT-IR). At last, cold-setting resins had been tried to manufacture laminated bamboo. The results obtained by this study are summarized: RTF resins would cure at the stage of resin synthesis, if resorcinol; bark extractive and formaldehyde were blended together to undergo the copolymerization reaction. On the other hand, bark extractives had been added after RF resins were prepared and copolymerized in acid condition, then they would produce RTF resins with cold-setting capacity and good bonding strength. PRTF resins those were prepared by both two-step and three-step copolymerization, they had lower viscosity, and their curing ability would be determined by the synthetic condition. The two-step copolymeriztion method, for PRTF resins made from acacia bark extractive, except PRTF-B2, they had cold-setting ability, but the resins made from China fir bark extractive, only PRTF-B7 appeared to have cold-setting property. The three-step copolymerization method, PRTF-C1 and PRTF-C3 which made from acacia bark extractive, PRTF-C7 and PRTF-C8 which made from China fir bark extractive, they showing had cold-setting ability. Cold-setting PRTF resin appeared to have better dry bonding strength. PRTF-B1、PRTF-B3 and PRTF-C3 had better wet bonding strength than PRF resins in hot water, but the wet bonding strength value was lower. All of PTF resins, no matter prepared from one-step or two-step copolymerization, they could not cure at room temperature. However, the thermosetting behavior analyzed by DSC revealed that the maximum temperature of exothermic peak and the heat of curing of PTF resins were lower than that of PF resin. Increase the rate of extractives would decrease the heat of curing. When PTF was used for manufacturing of plywood at 135 ℃ hot-pressing temperature, the bonding strength of PTF-A1 and PTF-A4 resins could reach the requirement of CNS standard for type I plywood. The wettability of the surface of bamboo could be improved by planning, sanding and 1 ﹪NaOH solution treatment. The worse contact between bamboo boards was the greatest defect when manufacturing laminated bamboo. The MOR and MOE of laminated bamboo made with RF could be improved by blending with bark extractives.
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Zhao, Yong. "Development of Bio-based Phenol Formaldehyde Resol Resins Using Mountain Pine Beetle Infested Lodgepole Pine Barks." Thesis, 2013. http://hdl.handle.net/1807/36080.

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Phenol formaldehyde (PF) resol resins have long been used widely as wood adhesives due to their excellent bonding performance, water resistance and durability. With the growing concern for fossil fuel depletion and climate change, there is a strong interest in exploring renewable biomass materials as substitutes for petroleum-based feedstock. Bark, rich in phenolic compounds, has demonstrated potential to partially substitute phenol in synthesizing bio-based PF resins. In this study, acid-catalyzed phenol liquefaction and alkaline extraction were used to convert mountain pine beetle (MPB; Dendroctonus ponderosae) infested lodgepole pine (Pinus contorta) barks to phenol substitutes, liquefied bark and bark extractives. Two types of bio-based phenol formaldehyde (PF) resol resins, namely liquefied bark-PF resin and bark extractive-PF resins, were then synthesized and characterized. It was found that acid-catalyzed phenol liquefaction and alkaline extraction were effective conversion methods to obtain phenol substitute with the maximum yield of 85% and 68%, respectively. The bio-based PF resol resins had higher molecular weights, higher polydispersity indices, shorter gel times, and faster curing rates than the lab synthesized control PF resin without the bark components. Based on the lap-shear tests, the bio-based PF resol resins exhibited comparable wet and dry bonding strength to lab PF resin and commercial PF resin. The post-curing thermal stability of the bio-based PF resins was similar to the lab control PF resin. The liquid-state 13C nuclear magnetic resonance (NMR) study revealed significant influences on the resin structures by the inclusion of the bark components. Methylene ether bridges, which were absent in the lab PF resin, were found in the bio-based PF resins. The bark components favored the formation of para-ortho methylene linkages in the bio-based bark extractive-PF resins. The liquefied bark-PF resin showed a higher ratio of para-para/ortho-para methylene link (-CH2-), a higher unsubstituted/substituted hydrogen (-H/-CH2OH) ratio and a higher methylol/methylene (-CH2OH/-CH2-) ratio than the bark extractive-PF resin. Both tannin components of bark alkaline extractives and phenolated barks contributed to the acceleration of the curing rate of the bio-based resins. This research demonstrated the promise of the bio-based PF resins containing either bark alkaline extractives or liquefied barks as environmentally friendly alternatives to PF adhesives derived solely from fossil fuel based phenol and proposed a novel higher value-added application of the largely available barks from the mountain pine beetle-infested lodgepole pine trees.
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Books on the topic "Phenix Bank"

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Potts, Kimberly. Kidz Bop be a pop star!: Start your own band, book your own gigs, and become a rock phenom! Avon, Mass: Adams Media, 2011.

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Kidz Bop : Be a Pop Star!: Start Your Own Band, Book Your Own Gigs, and Become a Rock and Roll Phenom! Adams Media Corporation, 2011.

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Book chapters on the topic "Phenix Bank"

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Calvert, Jack G., Roger Atkinson, Karl H. Becker, Richard M. Kamens, John H. Seinfeld, Timothy J. Wallington, and Greg Yarwood. "Reactions Of Monocyclic And Polycyclic Aromatic Compounds With N03 Radicals." In The Mechanisms Of Atmospheric Oxidation Of Aromatic Hydrocarbons, 135–66. Oxford University PressNew York, NY, 2002. http://dx.doi.org/10.1093/oso/9780195146288.003.0003.

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Abstract The gas-phase reactions of aromatic compounds with the N0 3 radical are only significant as a tropospheric loss process for compounds containing unsaturated &gt; C=C &lt; bonds in the substituent groups (e.g., styrene and acenaphthylene and related compounds) and for phenolic compounds (e.g., phenol and cresols). Analogous to the OH-radical reactions (see chapter II), the gas-phase reactions of the N03 radical with organic compounds appear to proceed by three pathways: (1) initial addition of the N03 radical to the carbon atoms of the aromatic ring to form an “NOraromatic adduct”; (2) H-atom abstraction from the C-H or 0-H bonds in the substituent group(s); or (3) N03-radical addition to the carbon atoms of &gt; C=C &lt; bonds in the substituent groups (Atkinson, 1991b). The data presently available indicate that the N03-radical addition pathway to the aromatic ring is reversible, with back-decomposition of the NO aromatic adduct dominating the atmospheric fate of the adduct (Atkinson, 1991b).
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Sahu, Dojalisa. "METAL OXIDE HETEROSTRUCTURE BASED PHOTOCATALYSTS FOR ENVIRONMENT REMEDIAL APPLICATIONS." In Futuristic Trends in Chemical Material Sciences & Nano Technology Volume 3 Book 14, 29–40. Iterative International Publishers, Selfypage Developers Pvt Ltd, 2024. http://dx.doi.org/10.58532/v3becs14p1ch4.

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The quest for sustainable solutions to address environmental challenges has led to significant research efforts in the development of advanced photocatalytic materials. Among these, metal oxide heterostructures have emerged as a promising class of materials with exceptional photocatalytic properties for environmental remediation applications. This article explores the recent advancements in the design, synthesis, and characterization of ZnO based metal oxide heterostructure-based photocatalysts, focusing on their applications in addressing environmental issues such as water and air pollution. In the present work, photocatalytic property of nanocomposites (NCs) of the metal oxides such as; ZnO and SnO2 has been discussed by synthesizing the samples by using the sol-gel method. By using X-ray diffraction (XRD) analysis, the structural parameters have been determined and the formation of two phased composite having tetragonal phases of rutile (SnO2) and wurtzite (ZnO) structures has been confirmed. FESEM study has been used to investigate the morphology along with the shape and surface property. The band gap of NC is higher than the band gaps of the individual oxides, according to optical absorbance investigation. Photocatalytic measurement shows improved degradation efficiency of the composites as compared to pristine samples. Prevention of rapid carrier recombination and the production of extremely reactive OH• and O2•- radicals are accountable for the breakdown of toxic substances like phenol and Rhodamine B(RB). This happens due to the hoarded electrons and holes on SnO2 and ZnO surfaces respectively. The photocatalytic mechanism has been explained thoroughly and after several iterations of experimentation, it was found that the nanocatalysts are incredibly stable and reusable.
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Delik, Anıl, and Yakup Ülger. "Treatment Approach in Patients with Decompensated Liver Cirrhosis." In Advances in Hepatology. IntechOpen, 2021. http://dx.doi.org/10.5772/intechopen.96155.

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Chronic liver disease and decompensated cirrhosis are the major causes of morbidity and mortality in the world. According to current data, deaths due to liver cirrhosis constitute 2.4% of the total deaths worldwide. Cirrhosis is characterized by hepatocellular damage that leads to fibrosis and regenerative nodules in the liver. The most common causes of cirrhosis include alcohol consumption, hepatitis C, hepatitis B, and non-alcoholic fatty liver disease. Dysbiosis and intestinal bacterial overgrowth play a role in the development of complications of cirrhosis through translocation. In liver cirrhosis, ascites, gastrointestinal variceal bleeding, spontaneous bacterial peritonitis infection, hepatic encephalopathy, hepatorenal syndrome, hepatocelluler carcinoma are the most common complications. In addition, there are refractory ascites, hyponatremia, acute on-chronic liver failure, relative adrenal insufficiency, cirrhotic cardiomyopathy, hepatopulmonary syndrome and portopulmonary hypertension. In the primary prophylaxis of variceal bleeding, non-selective beta blockers or endoscopic variceal ligation are recommended for medium and large variceal veins. In current medical treatment, vasoactive agents, antibiotics, blood transfusion, endoscopic band ligation are the standard approach in the treatment of acute variceal bleeding. Sodium-restricted diet, diuretics and large-volume paracentesis are recommended in the management of ascites. In the treatment of hepatic encephalopathy, lactulose, branched chain amino acids, rifaximin and L-ornithine L-aspartate can be used. New therapeutic approaches such as ornithine phenyl acetate spherical carbon and fecal microbiota transplantation have shown beneficial effects on hepatic encephalopathy symptoms. In addition to their antioxidative, anti-proliferative and anti-inflammatory properties, statins have been shown to reduce the risk of decompensation and death by reducing portal pressure in compensated cirrhosis. In the treatment of liver failure, some artificial liver devices such as molecular adsorbent recirculating system, the single albumin dialysis system, fractionated plasma separation and adsorption are used until transplantation or regeneration. The purpose of this chapter is to review the most up-to-date information on liver cirrhosis and to explain the complications assessment, current management and potential treatment strategies in decompensated cirrhosis.
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Taber, Douglass F. "The Deslongchamps Synthesis of (+)-Cassaine." In Organic Synthesis. Oxford University Press, 2017. http://dx.doi.org/10.1093/oso/9780190646165.003.0091.

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Although the Na+-K+-ATPase inhibitor (+)-cassaine 4 was isolated from the bark of Erythrophleum guineense in 1935, the structure was not established until 1959. Intriguing features of 4 include the unsaturated amide and the axial secondary methyl group, both pendant to the C ring. Pierre Deslongchamps, now at Université Laval, envisioned (Org. Lett. 2013, 15, 6270) that the relative stereochemistry of the second­ary methyl could be established kinetically by intramolecular Michael addition of the enolate formed by the addition of the anion of 2 to the enone 1 to give 3. The sulfoxide 2 was readily prepared by the addition (Tetrahedron Lett. 1990, 31, 3969) of the anion derived from methyl phenyl sulfoxide to methyl crotonate. The enone 1 was prepared from commercial dihydrocarvone 5. Robinson annula­tion with ethyl vinyl ketone 6 (Tetrahedron 2000, 56, 3409) led to 7, that was reduc­tively methylated, reduced further, and protected to give 8. Oxidative cleavage of the pendant isopropenyl group followed by Baeyer–Villiger oxidation, hydrolysis, and further oxidation gave the ketone 9, that was methoxycarbonylated, then oxidized further to 1. The addition of the anion derived from 2 to 1 presumably gave initially the axial adduct. Subsequent intramolecular Michael addition then proceeded selectively to one face of the residual enone to give, after elimination of the sulfoxide, the enone 3. The anionic cascade annulation that formed the C ring having been accomplished, the ester of 3 was removed by exposure to ethoxide to give 10, having the alkene con­jugated with the B-ring ketone. Selective reduction followed by protection gave 11. In the course of the hydrogenolytic deprotection of the A-ring alcohol, selective hydrogenation of the tetrasubstituted alkene was also observed. Increasing the H2 pressure and extending the reaction time gave complete conversion to the desired 12, the rela­tive configuration of which was established by X-ray crystallography. A series of protection, reduction, and oxidation steps led to the C-ring ketone, that was methoxycarbonylated to give 14. Reduction followed by dehydration gave the unsaturated ester, that was reduced to the saturated ester with Mg in methanol. Reduction followed by oxidation then delivered the aldehyde 15. After some investi­gation, it was found that the aldehyde could be converted to the desired enol triflate by exposure to KHMDS and the Comins reagent.
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Conference papers on the topic "Phenix Bank"

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Patel, K., B. J. James, and M. M. Hyland. "Valence Band XPS and FT-IR Evaluation of Thermal Degradation of HVAF Thermally Sprayed PEEK Coatings." In ITSC2008, edited by B. R. Marple, M. M. Hyland, Y. C. Lau, C. J. Li, R. S. Lima, and G. Montavon. Verlag für Schweißen und verwandte Verfahren DVS-Verlag GmbH, 2008. http://dx.doi.org/10.31399/asm.cp.itsc2008p1069.

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Abstract Coatings of poly(ether-ether-ketone) (PEEK) have been produced using the high-velocity air fuel (HVAF) thermal spray technique. These coatings have been produced at 50 and 100 mm nozzle lengths and 200, 300, and 400 mm gun-to-substrate distances on stainless steel 304 substrates. The techniques used to characterize and determine the extent of thermal degradation of the PEEK coatings were valence-band XPS and FTIR-ATR. Valence-band XPS showed that, in general, minimal degradation of the PEEK occurred during the HVAF thermal spraying process. FTIR-ATR results showed that more surface degradation of the PEEK coating occurred at the 200 mm gun-to-substrate distance for both nozzle lengths than at the larger gun-to-substrate distances. Specifically, absorption bands appeared at 2918 and 2850 cm-1, which correspond to alkane –CH2– asymmetric stretching modes. The resolution of the 672 cm-1 peak, which corresponds to C–H vibrations on the phenyl ring, increased from one to two peaks in the spectra of the 200 and 300 mm gun-to-substrate runs. This indicates a structural change in the phenyl ring, possibly indicating a change in the extent of crystallization of the PEEK polymer.
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Milenković, Dejan A., Marko N. Živanović, Milan S. Dekić, Marijana Stanojević Pirković, and Jelena R. Đorović Jovanović. "CYTOTOXIC ACTIVITY AND MOLECULAR DOCKING STUDY OF 4- SUBSTITUTED FLAVYLIUM SALT." In 1st INTERNATIONAL Conference on Chemo and BioInformatics. Institute for Information Technologies, University of Kragujevac,, 2021. http://dx.doi.org/10.46793/iccbi21.466m.

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In the present manuscript, the cytotoxic activity of flavylium cation substituted at 4- position with phenyl (FC-4Ph) was tested to two cells lines (human colorectal carcinoma, HCT-116, and human fibroblast lung, MRC-5). In vitro cytotoxicity experiments were performed to elucidate the possible anticancer activity of tested substance. Investigated compound did not show cytotoxic effect on HCT-116 after 24 h, while after 72 h exerted significant effect. A significant selectivity towards colorectal carcinoma cells was observed. On the other hand, this compound did not show any effect on MRC-5 cell line. The molecular interactions between receptor tyrosine kinase (RTK) and title compound was examined. The crystal structure of investigated receptor RTK was downloaded from Protein Data Bank. The native bound ligand ((E)-[4-(3,5-difluorophenyl)-3H-pyrrolo[2,3-b]pyridin-3-ylidene](3- methoxyphenyl)methanol was extracted from receptor and binding pocket analysis was performed. Re-docking was carried out with the FC-4Ph in order to generate the same docking pose as found in co-crystallized form of receptor. The obtained results of revealed that investigated compound binds at the same binding pockets to RTK, as well as native bound ligand, by weak non-covalent interactions. The most prominent interactions are hydrogen bonds, π-alkyl, and π-π interactions. The preliminary results suggest that investigated compound showed good binding affinity against RTK, as evident from the free binding energy (ΔGbind in kJ/mol).
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Tschanner, Julius, Jinchang Ren, Frances Jack, Stephen Marshall, and Huimin Zhao. "Employing NIR-SWIR hyperspectral imaging to predict the smokiness of scotch whisky." In OCM 2017 - 3rd International Conference on Optical Characterization of Materials. KIT Scientific Publishing, 2017. http://dx.doi.org/10.58895/ksp/1000063696-1.

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Scotch Whisky makes a significant contribution to the UK’s food and drinks export. The flavour of this high quality spirit is derived naturally from the whisky making process, with smoky aromas being a key character of certain Scotch whiskies. The level of smokiness is determined by the amount of phenolic compounds in the spirit. Phenols are introduced by exposing the barley malt to peat smoke during the kilning process. The current techniques to determine the levels of phenols, such as High Performance Liquid Chromatography (HPLC), are time consuming as they require distillation of the malt prior to analysis. To speed up this process and enable real-time detection before processing, the possibilities of Near-infrared to Short-wave-infrared (NIR-SWIR) Hyperspectral Imaging (HSI) to detect these phenols directly on malted barley are explored. It can be shown that via regression analysis, various levels of phenol concentration used as working levels for whisky production could be estimated to a satisfying degree. To further optimise industrial application, a hyperspectral band selection algorithm is applied that yields good results and reduces computational cost and may open possibilities to employ multispectral rather than hyperspectral cameras in future applications.
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Ozbay, N., and A. S. Yargic. "Liquefaction of oak tree bark with different biomass/phenol mass ratios and utilizing bio-based polyols for carbon foam production." In PROCEEDINGS OF THE 6TH INTERNATIONAL ADVANCES IN APPLIED PHYSICS AND MATERIALS SCIENCE CONGRESS & EXHIBITION: (APMAS 2016). Author(s), 2017. http://dx.doi.org/10.1063/1.4975454.

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Hormann, A., E. J. C. Olson, P. F. Barbara, M. R. Arkin, E. D. A. Stemp, R. E. Holmlin, and J. K. Barton. "Time Resolved Electron Transfer Studies Between Metallointercalators in DNA." In International Conference on Ultrafast Phenomena. Washington, D.C.: Optica Publishing Group, 1996. http://dx.doi.org/10.1364/up.1996.sab.6.

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This paper reports the first ultrafast studies on the rates of DNA-mediated forward and reverse electron transfer between photoexcited [M(phen)2dppz]2+ (M=Ru or Os, phen =1,10-phenanthroline, dppz = dipyrido[3,2:a-2′,3′:c]-phenazine) and various electron acceptors in order to ultimately determine the distance dependence of electron transfer kinetics with DNA as an environment.1,2 Previously Barton, Turro, and coworkers have presented evidence that electron transfer in DNA can occur rapidly over an extraordinarily large distance3 with a more shallow distance dependence than that for other media, such as liquids and proteins.4,5 Some theoretical work supports the shallow distance dependence which is attributed to a long range, thermally activated coherent mechanism involving virtual excitation of the DNA "bridge".6 Utilizing time-correlated single photon counting (TCSPC), we observe a substantial fraction of photoexcited [M(phen)2dppz]2+ (M=Ru, Os) exhibits fast oxidative quenching (kq > 3 x 1010 s−1) in the presence of intercalating Rh(III) acceptors while the remaining excited-state species exhibit a range of quenching constants less than 108 s_1. Transient-absorption experiments on the picosecond timescale indicate that, for a series of donors bound to mixed sequence DNA, the majority of back electron transfer is also very fast (ca. 1010 s−1). Importantly, the rate constant for the fast ground-state recovery is independent of loading of Rh(III) intercalators on DNA. As shown in Figure 1, regardless of whether the average loading of metal complexes is 1 in 33 basepairs or 1 in 10 basepairs, the fast bleach recovery exhibited by [Ru(phen)2dppz]2+ is well fit under all conditions by an exponential decay of 9 x 109s−1. Separate ultrafast data suggests that, like the recombination reaction, the fast quenching *M2+ is simple first-order at early time. If the early time electron transfer kinetics were not simple first order, and the electron transfer rate decayed with an exponential distance dependence (i.e. ≅ a factor of 30 per base step [3.4 Å]), our TCSPC apparatus should be able to observe some evidence of the slower components with rate constants in the range of 1010 - 108 s−1. The absence of rates in this range is evidence that the electron transfer is simple first order at time < 10 ns. This result has implications with regards to the donor-acceptor separations on DNA. Throughout most of the titration, intercalators are dilute on the double helix and statistics show that the amount of fast quenching and ground-state recovery observed is too great to be accounted for by random loading of nearest-neighbor pairs. Thus, either the electron transfer reaction must involve clustering of the donor and acceptor on the helix or the DNA-mediated interaction must occur over long distance.
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Kim, Hyuk Joo, Jae Hun Jung, Jung Hun Ham, and Tae Whan Kim. "Effect of C60 concentrations on the flat-band voltage shift of nonvolatile memory devices with a hybrid poly-4-vinyl-phenol and C60 active layer." In 2007 Digest of papers Microprocesses and Nanotechnology. IEEE, 2007. http://dx.doi.org/10.1109/imnc.2007.4456185.

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Takeya, H., S. Kawabata, T. Miyata, T. Morita, and S. Iwanaga. "A MODIFIED METHOD FOR PURIFICATION OF BOVINE FACTOR VII AND ITS PRIMARY STRUCTURE." In XIth International Congress on Thrombosis and Haemostasis. Schattauer GmbH, 1987. http://dx.doi.org/10.1055/s-0038-1643785.

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A modified method for purification of factor VII from bovine plasma was developed. The isolation procedures consisted of four steps with the ordinary barium citrate adsorption (1), DEAE-Sepharose chromatography (2), twice chromatographies on a benzamidine-Sepharose column (3) and affinity chromatography on Affigel-10 coupled with staphylocoagulase produced by Staphylococcus aureus, strain 213 (4). This final step was very effective for the removal of prothrombin contained in the pooled fraction of factor VII. Thus, these procedures allowed higher recovery of factor VII than the earlier methods and about 7 mg of the material was obtained from 15 liters of plasma. The purified preparation gave a single band on SDS-PAGE in the absence and presence of 2-mercaptoethanol and the apparent Mr was estimated as 53,000.To establish the whole primary structure at protein level, the isolated single chain factor VII was incubated with bovine factor Xlla and the resulting two chains-factor VII was reduced and S-pyridylethylated. The S-alkylated heavy and light chains were then separated on a TSK gel G3000SW followed by reversed phase HPLC on a Phenyl-5PWRP column. The amino acid sequence of the isolated light chain was determined by sequencing the peptides obtained from lysyl endopeptidase and α-chymotrypsin digests and from trypsin digest of the succinylated light chain. The light chain consisted of the total of 152 residues with 10 r-carboxyglutamic acids and contained one oligosaccharide chain at Asn-145. The light chain sequence was compared with that predicted from the cDNA sequence for human factor VII. It had 76 % sequence identity with the human's. The sequence of the factor Vll-heavy chain is being studied
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Reports on the topic "Phenix Bank"

1

Louisiana Pacific Corp. Use of bark-derived pyrolysis oils ass a phenol substitute in structural panel adhesives. Office of Scientific and Technical Information (OSTI), March 2004. http://dx.doi.org/10.2172/828163.

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