Academic literature on the topic 'Paternity Australia'

Female sea turtles are promiscuous, with clutches of eggs often sired by multiple males and rates of multiple paternity varying greatly within and across species. We investigated levels of multiple paternity in loggerhead sea turtles (Caretta caretta) from three rookeries in Western Australia by analysing polymorphic species-specific genetic markers. We predicted that the level of multiple paternity would be related to female population size and hence the large rookery at Dirk Hartog Island would have higher rates of multiple paternity than two smaller mainland rookeries at Gnaraloo Bay and Bungelup Beach. Contrary to our prediction, we found highly variable rates of multiple paternity among the rookeries that we sampled, which was unrelated to female population size (25% at Bungelup Beach, 86% at Gnaraloo Bay, and 36% at Dirk Hartog Island). Approximately 45 different males sired 25 clutches and the average number of sires per clutch ranged from 1.2 to 2.1, depending on the rookery sampled. The variance in rates of multiple paternity among rookeries suggests that operational sex ratios are variable in Western Australia. Periodic monitoring would show whether the observed patterns of multiple paternity for these three rookeries are stable over time, and our data provide a baseline for detecting shifts in operational sex ratios.

The grey nurse shark (Carcharius taurus) is listed as threatened throughout much of its global distribution, and as critically endangered in eastern Australia. Captive breeding programs have thus far been largely unsuccessful and little is known of its mating system in this context. Here we carry out a paternity analysis to determine if the mating system in captivity is characterised by multiple mating, and whether poor offspring survival is associated with a particular male. Tissue samples from grey nurse sharks were collected from three potential sires, the two dams and nine pups housed at Manly SEA LIFE Sanctuary in eastern Australia. Each individual was genotyped at seven microsatellite markers and three cases of multiple paternity were inferred. No paternal link to stillborn (5), or scoliotic (2) pups was indicated. For the first time, we show the natural wild phenomenon of multiple paternity occurring in a captive environment.

Although the majority of passerine birds are socially monogamous, true genetic monogamy is rare, with extra-pair paternity (EPP) occurring in almost 90% of surveyed socially monogamous species. We present the first molecular data on the genetic breeding system of the long-tailed finch,Poephila acuticauda, a grass finch endemic to the tropical northern savannah of Australia. Although the species forms socially monogamous pair bonds during the breeding season, we found that extra-pair males sired 12.8% of 391 offspring, in 25.7% of 101 broods. Our findings provide only the second estimate of extra-pair paternity in the estrildid finch family.

Estimates of outcrossing rate were determined for four populations of Eucalyptus marginata from the jarrah forest in south-west Western Australia. The mean multilocus outcrossing rate (t = 0.81) was high in all populations and was towards the high end of the range of outcrossing rates that have been observed in other mass-flowering eucalypt species. A significant proportion of the inbreeding detected appeared to be due to biparental inbreeding, and the levels of correlated paternity were unexpectedly high. Differences between populations were generally not significant, although trees from a disturbed site affected by disease showed lower outcrossing, higher biparental inbreeding and higher correlated paternity, suggesting an increase in population structure compared with trees from disease-free sites.

A combination of demographic and genetic data was collected from 354 feral pigs (Sus scrofa), caught using standard trapping methods in south-western Australia, to provide preliminary information on their social biology. This included attempts to identify the putative parentage of 172 juvenile and foetal pigs, characterisation of the genetic mating system observed, and examination of the demographics of those individuals captured by current trapping methods. Findings revealed that in south-western Australia (a) feral pigs displayed moderately polygynous, but not polyandrous, mating behaviour, (b) breeding boars were significantly heavier than non-breeding boars, (c) the most reproductively successful boars, large individuals weighing >90 kg, moved the furthest in order to secure paternity, and (d) that a large proportion of breeding adults, particularly boars, were not captured under the standard trapping method employed. Ultimately, these data may be useful for the improvement of existing control programs, and exotic disease preparedness strategies.

Rutidosis leptorrynchoides is a perennial forb endemic to grasslands and grassy woodlands in southeastern Australia. Studies of seed dispersal, spatial genetic structure and clonality were carried out in four populations around the Canberra region that varied in levels of correlated paternity to examine: (1) whether R. leptorrhynchoides populations exhibit fine-scale spatial genetic structure and whether this varies between populations as a function of correlated paternity; (2) whether there is a correlation between seed dispersal distance and genetic relatedness within populations; and (3) whether clonal reproduction occurs in this species and to what degree this could account for the observed spatial genetic structure. The results show that there is variation in the magnitude and extent of spatial genetic structure between R. leptorrhynchoides populations. The three larger populations, with low to moderate full-sib proportions, showed significant patterns of coancestry between plants over scales of up to one metre, whereas the smallest population, with a high full-sib proportion, had erratically high but non-significant coancestry values. The observed patterns of genetic clumping could be explained by a combination of limited seed dispersal and correlated mating owing to limited mate availability resulting from the species' sporophytic self-incompatibility system. Clonality does not appear to be an important factor contributing to genetic structure in this species.

We isolated 25 new polymorphic microsatellite markers from the eastern mosquitofish, Gambusia holbrooki. Initially, 454 shotgun sequencing was used to identify 1187 loci for which primers could be designed. Of these 1187, we trialled 48 in the target species, 40 of which amplified a product of expected size. Subsequently, those 40 loci were screened for variation in 48 individuals from a single population in Canberra, Australia. Twenty loci were in Hardy–Weinberg equilibrium and polymorphic, with observed heterozygosity ranging from 0.04 to 0.72 (mean: 0.45 ± 0.18) and the number of alleles per locus ranged from 2 to 5 (mean: 3.20 ± 1.05). These loci will be useful in understanding genetic variation, paternity analysis and in managing this species across both its native and invasive range.

Male bottlenose dolphins (Tursiops sp.) in Shark Bay, WA, form several levels of alliances. Determining the relationship between paternity, relatedness and alliance membership is crucial in seeking evolutionary adaptive explanations for alliance formation. Previous behavioural data have revealed a social system whose complexity is unparalleled outside humans. Pairs or trios of male dolphins cooperate as stable first-order (1? alliances to sequester and control reproductive females. Two 1?alliances sometimes cooperate as small second-order (2? alliances to attack other 1?alliances or defend against attacks. Some males choose a different strategy by forming large superalliances of approximately fourteen individuals to attack 1?and 2?alliances. Kinship appears to play a role in the structuring of male alliances, but its importance differs with the alliance type. Relatedness analyses showed that on average, males in 1?and 2?alliances are strongly related, while members of the superalliance are not. Further, the strength of the association of partners within the superalliance was not correlated with their genetic relatedness. Thus, within one sex, it appears that there may be more than one simultaneous mode of group formation and its evolution. There was also an association between alliance behaviour and reproductive success as predicted by some theories of group formation. I assigned nine paternities to six out of 107 mature males. Males with alliance partners were significantly more successful in fathering offspring than males without partners. Compared to non-allied males, the chance of obtaining a paternity was significantly higher for members of 1?alliances, and reproductive success was significantly skewed among 1?alliance members. Assessment of kinship and relatedness required a number of technical developments and some preliminary data. I first refined a biopsy system in order to obtain tissue samples from free-ranging dolphins with minimum behavioural effects irrespective of age-group or gender. Then I carried out population genetics analyses, which demonstrated that there was only weak population structure within Shark Bay. Microsatellites showed a weak pattern of isolation by distance, and eight haplotypes of the mitochondrial DNA control region suggested weak female philopatry. The high number of migrants between locations allowed all samples from East Shark Bay to be pooled for subsequent analyses.

The Australian magpie (Gymnorhina tibicen) is a large, sedentary, omnivorous passerine. In some populations, individuals live in groups, and some of these groups breed cooperatively. The white-backed magpie (G. t. tyrannica) from the south-eastern corner of the continent, has had relatively little study, and few details are known of its mating system, social structure, and method of parental care. I conducted an observational study on a population of white-backed magpies, recording details of their demography, dispersal, breeding system, and parental care. In conjunction, I conducted a genetic analysis of the population, to determine if the genetic mating system matched the observed social system, to detect instances of extra-group mating, and to sex juvenile birds. Extra-pair paternity (EPP) is a common feature of the mating systems of many birds. The rate of EPP may vary between species, races and populations. I made a comparison of extra-group paternity (EGP) rates between two races of the Australian magpie, to determine if similar mating systems were being employed. The two populations had similar social structure, but differed in group size and dispersal. I predicted that dispersal differences would have a profound effect on the rate of EGP between the populations, as the population with the lower rate of dispersal and higher chance of breeding with a close relative would engage in EGPs more frequently. Eight microsatellite loci were used to determine parentage in the white-backed Australian magpie. The rate of EGP was found to be 44%. Dispersal rates were estimated from observational data. Over half of the juvenile magpie cohort from the previous breeding season leave the territorial group. These results contrast sharply with the results found by other researchers in a population of western Australian magpies (G t. dorsalis). In this population, 82% EGP is recorded and dispersal of juveniles is close to nil. The results indicate that dispersal rate is a potentially important predictor of rates of extra-group fertilisations between populations of this species, and suggest that females maximise their reproductive output by avoiding breeding with close kin. The reproductive success of a male bird is often correlated with measurable traits that predict his intrinsic quality. Females are thought to select mates based on their quality to gain their 'good genes'. Male Australian magpies of the white-backed race were trapped in two breeding seasons. Measurements were taken of morphometric and other characteristics in order to discover whether particular traits of males were associated with: a) number of fledglings produced in the territory per season; b) percentage of offspring sired in the territory; and c) whether females select males for their 'good genes'. The only variable that was correlated with number of territorial offspring was feather lice load. Males with high numbers of lice were less likely to produce territorial fledglings in one season and across both seasons. Males of inferior quality may be subject to increased conspecific territorial intrusions, leading to more time spent on defence, more failed breeding attempts, less time allocated to grooming and thus high parasite loads. Males that produced many territorial fledglings were more likely to gain genetic paternity of at least some of them, although again this was significant for only one season. Also, across both seasons, a high number of females in the group was correlated with increased paternity within the group. The general lack of correlation between the variables and level of genetic paternity may be due to females engaging in extra-group mating primarily to avoid breeding with a close relative rather than to choose a quality male. In this scenario, males would not have to be 'high quality', but merely genetically different to the female's social mate. Extra-group paternity (EGP) can affect paternal effort. It may also influence the helping effort of auxiliary birds in cooperatively breeding species. If helping is driven by kin selection, helpers should decline to provision unrelated young. Relatedness becomes difficult to assess however, when females mate outside the group. Alternative rewards may then become important in helper decisions. In my study population of Australian magpies, 38% of fledglings were sired by males outside the territorial group. In a second population (G. t. dorsalis), 82% of fledglings were sired by extra-group males. I observed within-group male and helper feeding effort over three breeding seasons in the first population and obtained data recorded over a single season in the second population. In both populations, males provisioned young regardless of relatedness, as did helpers. Males provisioned less than the nesting female on average. Paternal effort did not reduce with an increase in the rate of EGP between populations. In the population with intermediate levels of EGP, the white-backed magpies, I observed helpers in about half of the sampled territories that produced fledglings. Helpers did not increase the production of young. In the population with high levels of EGP, western magpies, I detected helping behaviour in proportionally more territories. It appears that Australian magpie helpers provide help in order to pay 'rent' and remain on the natal territory. I discuss these results in light of the differences between the two races of magpie and the major theories regarding male parenting decisions and helper activity. Finally, I examine the relatively high rates of EGP's in the Australian magpie from a phylogenetic perspective. Although inbreeding avoidance is strongly supported by this study as the major reason EGP is so common in magpie populations, there may be an element of phylogenetic inertia that maintains the frequency of this behavioural trait. I comment upon the use of single-population estimates of species EGP rates in comparative analyses, given the intraspecific variation discovered between Australian magpie populations. Future directions for the study of mate choice in the Australian magpie are outlined with a proposal to study variation at the major histocompatibility complex between mated pairs.

Le lion de mer Australien a un cycle de reproduction non-annuel et asynchrone entre les colonies.Contrairement aux autres pinnipèdes, ce système unique offre l’opportunité aux mâles de se reproduiredans plusieurs sites lors d’une saison de reproduction. L’accès des mâles à plusieurs sites dereproduction pourrait contrecarrer le fort degré de structure génétique de population chez les femellesdûe à une fidélité extrême au site de reproduction. J'ai utilisé deux méthodes indépendantes maiscomplémentaires, moléculaire et acoustique, afin d’étudier la structure de la population et le systèmede reproduction. Pour l'analyse moléculaire, j'ai développé une banque de microsatellites spécifiques àl'espèce. Ces marqueurs ont été utilisés pour examiner le flux génétique des mâles dans les différentescolonies de reproduction, le succès reproducteur, et les taux de paternité inter- et intra-colonies. Deplus, j'ai mesuré la variation géographique dans les cris des mâles, ce qui représente une approchealternative pour mesurer les convergences/divergences entre colonies. J'ai montré que si les mâlesprésentent une certaine dispersion entre colonies, elle est limitée à une courte échelle en dépit del’opportunité des mâles de se reproduire dans différents sites. Les analyses acoustiques des cris demâles ont révélé des variations géographiques significatives entre colonies, qui ne reflètent pas lastructure génétique. Les analyses de paternité indiquent un faible taux de polygynie, la majorité desmâles ne produisant qu’un ou deux jeunes par saison. Des stratégies alternatives de reproduction(nomade ou sédentaire) sont présentes dans cette espèce, certains mâles se déplaçant activement entredifférentes colonies proches. Le système de reproduction unique du lion de mer Australien semblefortement influer à la fois les modalités de dispersion, mais aussi la structure de population et lesystème de reproduction
The Australian sea lion has a non-annual and asynchronous breeding cycle across geographically closecolonies. In contrast to other pinnipeds, this unique reproductive system provides the opportunity formales to breed in different colonies during one breeding cycle. Male mating success across differentcolonies could counteract the high degree of structure driven by extreme site fidelity in females. I usedtwo, independent but complementary methods, molecular and acoustic to investigate their populationstructure and mating system. For molecular analysis I developed a species-specific microsatellitelibrary. These markers were used to examine the extent and rate of male mediated gene-flow acrossbreeding colonies but also to determine the breeding success and paternity both within and acrossspatially close colonies. Also, I investigated the geographical variation in male barking call. Thisrepresents an alternative approach to measure boundaries and relationships between colonies. Malesexhibit dispersal; however, this is limited to remarkably small scale in regards to the high potential fordispersal and opportunity to breed in different colonies. Acoustic analyses of the male barking callsrevealed significant geographical variation across sites; however this observed acoustic variation didnot reflect the genetic structure. Paternity analyses revealed that males display relatively modest ratesof polygyny with the majority of successful males siring only one or two pups per breeding cycle. Thepresence of alternative mating strategies (roaming vs staying) is apparent in this species with somemales actively moving and breeding between close colonies. It appears that the unique breedingbiology of Australian sea lion influences dispersal patterns, population structure and mating system

Acacia saligna is a native species complex with a widespread natural distribution throughout the south west of Western Australia. It is being developed as an agroforestry crop to produce low value, bulk biomass products in the low rainfall agricultural areas of southern Australia. This thesis develops knowledge to assist the domestication and breeding program of A. saligna as an agroforestry cultivar. It also furthers development of a risk management plan for utilisation of the Acacia saligna species complex. Highly informative microsatellite markers for A. saligna were developed for use in mating system studies, paternity analysis and in the development of a diagnostic tool for the identification of individuals and populations at the subspecific level. Microsatellites developed in other Acacia species were also screened for utility in A. saligna. A high level of outcrossing (mean multilocus outcrossing rate of 0.98) and little true selfing was found for a planted stand of A. saligna subspecies saligna. Paternity analysis indicated heterogeneity in pollen clouds experienced by maternal trees and an essentially random pattern of mating within the stand. Inter-subspecific pollen immigration into the stand from trees of subspecies lindleyi was detected for 14% of progeny analysed and occurred over distances greater than 1500 m. Extensive intra-subspecific pollen-mediated gene flow is maintained between remnant natural populations of A. saligna subspecies lindleyi, and a high level of inter-subspecific pollen immigration from trees in the planted stand of A. saligna subspecies saligna was detected in remnant populations of subspecies lindleyi (32% of analysed progeny) occurring over distances greater than 1500 m. Polymorphic microsatellite markers used to investigate genetic structuring within A. saligna revealed a high level of genetic divergence between subspecific entities congruent with a taxonomic reclassification of the species complex. Selected microsatellite markers also proved suitable for use as a rapid diagnostic tool that can be used to characterise populations into one of the proposed subspecies of A. saligna with high probability. These results indicate that high levels of outcrossing and essentially random patterns of mating that maintain genetic diversity in seed crops should be achievable with the suitable management of seed production stands of A. saligna. Appropriate management techniques that limit genetic contamination into seed production stands will need to be employed to achieve this goal. Management techniques will also be required to minimise the risk of genetic contamination from stands planted for agroforestry purposes into remnant natural populations. Isolation distances greater than 1500 m between genetically divergent agroforestry crops and natural populations are suggested in both cases and key areas of further research are suggested.
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Thesis (Ph.D.) -- University of Adelaide, School of Agriculture, Food and Wine, 2008

Acacia saligna is a native species complex with a widespread natural distribution throughout the south west of Western Australia. It is being developed as an agroforestry crop to produce low value, bulk biomass products in the low rainfall agricultural areas of southern Australia. This thesis develops knowledge to assist the domestication and breeding program of A. saligna as an agroforestry cultivar. It also furthers development of a risk management plan for utilisation of the Acacia saligna species complex. Highly informative microsatellite markers for A. saligna were developed for use in mating system studies, paternity analysis and in the development of a diagnostic tool for the identification of individuals and populations at the subspecific level. Microsatellites developed in other Acacia species were also screened for utility in A. saligna. A high level of outcrossing (mean multilocus outcrossing rate of 0.98) and little true selfing was found for a planted stand of A. saligna subspecies saligna. Paternity analysis indicated heterogeneity in pollen clouds experienced by maternal trees and an essentially random pattern of mating within the stand. Inter-subspecific pollen immigration into the stand from trees of subspecies lindleyi was detected for 14% of progeny analysed and occurred over distances greater than 1500 m. Extensive intra-subspecific pollen-mediated gene flow is maintained between remnant natural populations of A. saligna subspecies lindleyi, and a high level of inter-subspecific pollen immigration from trees in the planted stand of A. saligna subspecies saligna was detected in remnant populations of subspecies lindleyi (32% of analysed progeny) occurring over distances greater than 1500 m. Polymorphic microsatellite markers used to investigate genetic structuring within A. saligna revealed a high level of genetic divergence between subspecific entities congruent with a taxonomic reclassification of the species complex. Selected microsatellite markers also proved suitable for use as a rapid diagnostic tool that can be used to characterise populations into one of the proposed subspecies of A. saligna with high probability. These results indicate that high levels of outcrossing and essentially random patterns of mating that maintain genetic diversity in seed crops should be achievable with the suitable management of seed production stands of A. saligna. Appropriate management techniques that limit genetic contamination into seed production stands will need to be employed to achieve this goal. Management techniques will also be required to minimise the risk of genetic contamination from stands planted for agroforestry purposes into remnant natural populations. Isolation distances greater than 1500 m between genetically divergent agroforestry crops and natural populations are suggested in both cases and key areas of further research are suggested.
Thesis (Ph.D.) -- University of Adelaide, School of Agriculture, Food and Wine, 2008

There are few other structures in nature from which evolution has generated such wide diversity as the flower or inflorescence, and this diversity is commonly attributed to the influence of their animal visitors. By outsourcing their mate choice to pollinators, plants have left themselves - and especially their flowers - subject to the selective forces imposed by the behaviour, cognition and perception of the pollinators that serve them. The orchids provide some of the most remarkable and extreme examples of adaptations to specific animal pollinators. Perhaps one of the most peculiar of these strategies is sexual deception, whereby male insects are lured to the flower by mimicry of the female sex pheromone. This seemingly unlikely strategy has evolved multiple times independently on different continents in different parts of the orchid phylogeny which raises the question of what adaptive advantages might underlie such a strategy. This multidisciplinary thesis studies gene flow and pollinator behaviour in two sympatric sexually deceptive orchids in the genus Chiloglottis. The two species attract their specific wasp pollinators through emission of distinct species - specific semiochemicals. Since floral volatiles play a pre-eminent role in pollinator attraction, Chiloglottis provides an excellent case study for examining the interaction between floral volatile chemistry, pollinator behaviour and the evolutionary dynamics of populations. The thesis begins with a review of floral volatiles and their role in pollinator attraction and plant speciation. The literature is used to develop a research framework of six testable hypotheses under which we might productively explore the influence of floral volatiles on plant evolution. These hypotheses are then explored in the study system over the following chapters. A study of pollinator specificity, neutral genetic differentiation and floral chemistry demonstrates that the chemical mimicry crucial to sexual deception is responsible for reproductive isolation and potentially even speciation. Mating system and paternity analysis provide the first genetic evidence for multiple paternity in orchid broods. Extensive outcrossing is found to predominate and paternity assignment shows evidence for long distance pollen flow supporting the hypothesis that sexual deception promotes outcrossing and so minimizes the potentially deleterious effects of selfing. Lastly, an innovative new method is developed for tracking wasps in the field. Application of this technique to a population of orchid-pollinating wasps reveals detailed information about their movement and mating behaviour. The findings support the conclusion that sexual deception is a superb adaptive solution to the problem flowers face of simultaneously attracting pollinators and persuading them to leave quickly.