Academic literature on the topic 'Oligonucleotide microarray'
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Journal articles on the topic "Oligonucleotide microarray"
Kyselková, M., J. Kopecký, M. Ságová-Marečková, G. L. Grundmann, and Y. Moënne-Loccoz. "Oligonucleotide microarray methodology for taxonomic and functional monitoringof microbial community composition." Plant, Soil and Environment 55, No. 9 (October 14, 2009): 379–88. http://dx.doi.org/10.17221/140/2009-pse.
Full textChizhikov, Vladimir, Avraham Rasooly, Konstantin Chumakov, and Dan D. Levy. "Microarray Analysis of Microbial Virulence Factors." Applied and Environmental Microbiology 67, no. 7 (July 1, 2001): 3258–63. http://dx.doi.org/10.1128/aem.67.7.3258-3263.2001.
Full textRussell, R. "Designing microarray oligonucleotide probes." Briefings in Bioinformatics 4, no. 4 (January 1, 2003): 361–67. http://dx.doi.org/10.1093/bib/4.4.361.
Full textZhang, Yongqing, Antonio Ferreira, Cheng Cheng, Yongchun Wu, and Jiong Zhang. "Modeling Oligonucleotide Microarray Signals." Applied Bioinformatics 5, no. 3 (2006): 151–60. http://dx.doi.org/10.2165/00822942-200605030-00003.
Full textKoslov, I. A., F. Kaper, L. Zhou, and M. S. Chee. "Microarray based oligonucleotide synthesis." Nucleic Acids Symposium Series 52, no. 1 (September 1, 2008): 723. http://dx.doi.org/10.1093/nass/nrn365.
Full textLehner, Angelika, Alexander Loy, Thomas Behr, Helga Gaenge, Wolfgang Ludwig, Michael Wagner, and Karl-Heinz Schleifer. "Oligonucleotide microarray for identification ofEnterococcusspecies." FEMS Microbiology Letters 246, no. 1 (May 2005): 133–42. http://dx.doi.org/10.1016/j.femsle.2005.04.002.
Full textGoji, Noriko, Trevor MacMillan, and Kingsley Kwaku Amoako. "A New Generation Microarray for the Simultaneous Detection and Identification ofYersinia pestisandBacillus anthracisin Food." Journal of Pathogens 2012 (2012): 1–8. http://dx.doi.org/10.1155/2012/627036.
Full textKingsley, Mark T., Timothy M. Straub, Douglas R. Call, Don S. Daly, Sharon C. Wunschel, and Darrell P. Chandler. "Fingerprinting Closely Related Xanthomonas Pathovars with Random Nonamer Oligonucleotide Microarrays." Applied and Environmental Microbiology 68, no. 12 (December 2002): 6361–70. http://dx.doi.org/10.1128/aem.68.12.6361-6370.2002.
Full textGERHOLD, DAVID, MEIQING LU, JIAN XU, CHRISTOPHER AUSTIN, C. THOMAS CASKEY, and THOMAS RUSHMORE. "Monitoring expression of genes involved in drug metabolism and toxicology using DNA microarrays." Physiological Genomics 5, no. 4 (April 27, 2001): 161–70. http://dx.doi.org/10.1152/physiolgenomics.2001.5.4.161.
Full textAli Syed, Haider, and David W. Threadgill. "Enhanced oligonucleotide microarray labeling and hybridization." BioTechniques 41, no. 6 (December 2006): 685–86. http://dx.doi.org/10.2144/000112290.
Full textDissertations / Theses on the topic "Oligonucleotide microarray"
Li, Xiaopeng. "Development of Oligonucleotide Microarray for High Throughput DNA Methylation Analysis." Cleveland State University / OhioLINK, 2008. http://rave.ohiolink.edu/etdc/view?acc_num=csu1224605179.
Full textVan, Zuydam Natalie Rachel. "Identification of Leptographium species by oligonucleotide discrimination on a DNA microarray." Diss., University of Pretoria, 2009. http://hdl.handle.net/2263/28928.
Full textDissertation (MSc)--University of Pretoria, 2011.
Genetics
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Broto, Avilés Marta. "Universal diagnostic platforms based on oligonucleotide codified nanoparticles and DNA microarray devices." Doctoral thesis, Universitat de Barcelona, 2017. http://hdl.handle.net/10803/462828.
Full textPersonalized therapy has become a crucial issue lately. It should be based on the simultaneous monitoring of different biomarkers which might include molecules of different chemical nature. This fact, calls for developing universal technological diagnostic approaches, able to determine these biomarkers, independently from their chemical nature, while modulating the necessary amplification factor. In this context, the aim of the project is to develop of a universal, multiplexed (for several biomarkers) and multimodal (biomarkers of different chemical nature) in vitro diagnostic bioanalytical platform. The proposed approach (Figure 1) pretends to translate any type of biomolecular interaction (bioreceptor-biomarker) into a PCR-less DNA amplification process that is finally detected on a DNA-microarray biosensor platform. This strategy is called biobarcode assay. As proof-of-concept of the proposed approach, we have focused on the detection of biomarkers related to cardiovascular diseases (CVDs) and, also, drugs related to cancer disease. CVDs are the main cause of death in the world and include a group of disorders of the heart and blood vessels, multimodal and multiplexed detection of CVDs-related biomarkers would help the monitoring of patient status. Otherwise, the second cause of death worldwide is cancer; drugs used to treat cancer are called cytostatics. Closely levels of therapeutic and toxic doses of cytostatics make therapeutic drug monitoring the milestone for the optimization of cancer treatment. It can be assumed that monitoring of drug concentration jointly with main metabolites should improve efficacy and tolerability and reduce toxicity. The main objective of the project will consist on demonstrating that it is possible to analyze targets of different chemical nature, and that the amplification can be modulated by varying the charge of oligonucleotides covalently attached to the nanoparticles.
Black, Ryan Weldon. "Design and Evaluation of Oligonucleotide Microarrays for the Detection of Bovine Pathogens." DigitalCommons@USU, 2009. https://digitalcommons.usu.edu/etd/381.
Full textNordberg, Eric Kinsley. "Creating Scientific Software, with Application to Phylogenetics and Oligonucleotide Probe Design." Diss., Virginia Tech, 2015. http://hdl.handle.net/10919/64366.
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Benoit, Marie-Helene. "Oligonucleotide microarray analysis of chromosome-X gene expression in human epithelial ovarian cancer cell lines." Thesis, McGill University, 2004. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=81597.
Full textJeong, Sooyoung. "A custom oligonucleotide microarray analysis as a tool for dissecting soybean-bradyrhizobium japonicum nodule senescence." Diss., Columbia, Mo. : University of Missouri-Columbia, 2007. http://hdl.handle.net/10355/6266.
Full textThe entire dissertation/thesis text is included in the research.pdf file; the official abstract appears in the short.pdf file (which also appears in the research.pdf); a non-technical general description, or public abstract, appears in the public.pdf file. Title from title screen of research.pdf file (viewed on May 27, 2009) Includes bibliographical references.
Gusnanto, Arief. "Regression on high-dimensional predictor space : with application in chemometrics and microarray data /." Stockholm, 2004. http://diss.kib.ki.se/2004/91-7140-153-9/.
Full textWennmalm, Kristian. "Analytical strategies for identifying relevant phenotypes in microarray data /." Stockholm, 2007. http://diss.kib.ki.se/2007/978-91-7357-401-3/.
Full textXue-Franzén, Yongtao. "DNA microarray approaches to understanding the regulation and evolution of gene expression networks." Stockholm : Huddinge : Karolinska institutet ; Södertörns högskola, 2009. http://diss.kib.ki.se/2009/978-91-7409-554-8/.
Full textBooks on the topic "Oligonucleotide microarray"
Knudsen, Steen. Guide to Analysis of DNA Microarray Data. New York: John Wiley & Sons, Ltd., 2005.
Find full textSteen, Knudsen, ed. Guide to analysis of DNA microarray data. 2nd ed. Hoboken, N.J: Wiley-Liss, 2004.
Find full textZidong, Wang, and Liu Xiaohui, eds. Microarray image analysis: An algorithmic approach. Boca Raton, FL: Chapman & Hall/CRC, 2010.
Find full textMicroarray analysis. Hoboken, NJ: Wiley-Liss, 2003.
Find full textDongguang, Li, ed. DNA microarray technology and data analysis in cancer research. Singapore: World Scientific, 2008.
Find full textJavier, Cabrera, ed. Exploration and analysis of DNA microarray and protein array data. Hoboken, NJ: John Wiley, 2004.
Find full textApplying genomic and proteomic microarray technology in drug discovery. Boca Raton: CRC Press, 2005.
Find full textT, Kho Alvin, and Butte Atul J, eds. Microarrays for an integrative genomics. Cambridge, Mass: MIT Press, 2003.
Find full textThomas, Roeder, ed. Microarrays. Burlington, MA: Elsevier Academic Press, 2006.
Find full textMuller, Hans-Joachim. Microarrays. Burlington, MA: Elsevier Academic Press, 2005.
Find full textBook chapters on the topic "Oligonucleotide microarray"
De Carvalho, Sérgio A., and Sven Rahmann. "Algorithms for Oligonucleotide Microarray Layout." In Bioinformatics Algorithms, 277–301. Hoboken, NJ, USA: John Wiley & Sons, Inc., 2007. http://dx.doi.org/10.1002/9780470253441.ch13.
Full textKim, Young H., and Jonathan R. Pollack. "Comparative Genomic Hybridization on Spotted Oligonucleotide Microarrays." In Microarray Analysis of the Physical Genome, 21–32. Totowa, NJ: Humana Press, 2009. http://dx.doi.org/10.1007/978-1-60327-192-9_3.
Full textLucito, Robert, and James Byrnes. "Comparative Genomic Hybridization by Representational Oligonucleotide Microarray Analysis." In Microarray Analysis of the Physical Genome, 33–46. Totowa, NJ: Humana Press, 2009. http://dx.doi.org/10.1007/978-1-60327-192-9_4.
Full textMalutan, Raul, Pedro Gómez, and Monica Borda. "Oligonucleotide Microarray Probe Correction by FixedPoint ICA Algorithm." In Distributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, and Ambient Assisted Living, 988–91. Berlin, Heidelberg: Springer Berlin Heidelberg, 2009. http://dx.doi.org/10.1007/978-3-642-02481-8_150.
Full textBarros, Eugenia. "Identification of Mycotoxigenic Fungi Using an Oligonucleotide Microarray." In Laboratory Protocols in Fungal Biology, 529–34. New York, NY: Springer New York, 2012. http://dx.doi.org/10.1007/978-1-4614-2356-0_52.
Full textPullat, Janne, and Andres Metspalu. "Arrayed Primer Extension Reaction for Genotyping on Oligonucleotide Microarray." In Prenatal Diagnosis, 161–67. Totowa, NJ: Humana Press, 2008. http://dx.doi.org/10.1007/978-1-59745-066-9_12.
Full textSipe, Conor W., Vijay R. Dondeti, and Margaret S. Saha. "In Silico Gene Selection for Custom Oligonucleotide Microarray Design." In Methods in Molecular Biology, 417–28. Totowa, NJ: Humana Press, 2007. http://dx.doi.org/10.1007/978-1-59745-304-2_26.
Full textEeckhoute, Jérôme, Mathieu Lupien, and Myles Brown. "Combining Chromatin Immunoprecipitation and Oligonucleotide Tiling Arrays (ChIP-Chip) for Functional Genomic Studies." In Microarray Analysis of the Physical Genome, 155–64. Totowa, NJ: Humana Press, 2009. http://dx.doi.org/10.1007/978-1-60327-192-9_11.
Full textFassbender, Anne, Jörn Lewin, Thomas König, Tamas Rujan, Cecile Pelet, Ralf Lesche, Jürgen Distler, and Matthias Schuster. "Quantitative DNA Methylation Profiling on a High-Density Oligonucleotide Microarray." In Methods in Molecular Biology, 155–70. Totowa, NJ: Humana Press, 2009. http://dx.doi.org/10.1007/978-1-59745-545-9_9.
Full textFilippone, Maurizio, Francesco Masulli, Stefano Rovetta, Sushmita Mitra, and Haider Banka. "Possibilistic Approach to Biclustering: An Application to Oligonucleotide Microarray Data Analysis." In Computational Methods in Systems Biology, 312–22. Berlin, Heidelberg: Springer Berlin Heidelberg, 2006. http://dx.doi.org/10.1007/11885191_22.
Full textConference papers on the topic "Oligonucleotide microarray"
Lu, Zu-Hong, Yujie Zhao, Nongyao He, and Xiao Sun. "Design and on-chip synthesis technology of oligonucleotide microarray." In Optics and Optoelectronic Inspection and Control: Techniques, Applications, and Instruments, edited by Hong Liu and Qingming Luo. SPIE, 2000. http://dx.doi.org/10.1117/12.403955.
Full textHou, Peng, Meiju Ji, Nongyao He, and Zuhong Lu. "Methylation oligonucleotide microarray: a novel tool to analyze methylation patterns." In Microtechnologies for the New Millennium 2003, edited by Angel Rodriguez-Vazquez, Derek Abbott, and Ricardo Carmona. SPIE, 2003. http://dx.doi.org/10.1117/12.497693.
Full textWang, Lili, Alioune Ngom, and Robin Gras. "Non-unique oligonucleotide microarray probe selection method based on genetic algorithms." In 2008 IEEE Congress on Evolutionary Computation (CEC). IEEE, 2008. http://dx.doi.org/10.1109/cec.2008.4630919.
Full textDuan, Liang, Yonghui Song, Siqing Xia, Slawomir W. Hermanowicz, Fangming Jin, Qi Zhou, and Bing Wu. "Detection of microbial communities in continuous and discontinuous membrane bioreactor using high-density oligonucleotide Microarray." In 2nd International Symposium on Aqua Science, Water Resource and Low Carbon Energy. AIP, 2010. http://dx.doi.org/10.1063/1.3529266.
Full textHuang, Chi-Cheng, Chao-Chiang Tu, Mong-Hsun Tsai, Liang-chuan Lai, and Ching-Shui Huang. "Abstract 2481: Concordance of PAM50 molecular subtyping between oligonucleotide microarray and nanoString nCounter assay for Taiwanese breast cancer." In Proceedings: AACR Annual Meeting 2020; April 27-28, 2020 and June 22-24, 2020; Philadelphia, PA. American Association for Cancer Research, 2020. http://dx.doi.org/10.1158/1538-7445.am2020-2481.
Full textMcArthur, HL, LK Tan, S. Patil, M. Wigler, CA Hudis, J. Hicks, and L. Norton. "High resolution representational oligonucleotide microarray analysis (ROMA) suggests that TOPO2 and HER2 co-amplification is uncommon in human breast cancer." In CTRC-AACR San Antonio Breast Cancer Symposium: 2008 Abstracts. American Association for Cancer Research, 2009. http://dx.doi.org/10.1158/0008-5472.sabcs-2023.
Full textLi, Jiong, Hong Wang, Heping Liu, M. Zhang, Chunxiu Zhang, Zu-Hong Lu, Xiang Gao, and Dong Kong. "Long synthetic oligonucleotides for microarray expression measurement." In International Conference on Sensing units and Sensor Technology, edited by Yikai Zhou and Shunqing Xu. SPIE, 2001. http://dx.doi.org/10.1117/12.440169.
Full textBurden, C. J. "Intensity isotherms and distributions on oligonucleotide microarrays." In 2009 IEEE Congress on Evolutionary Computation (CEC). IEEE, 2009. http://dx.doi.org/10.1109/cec.2009.4983335.
Full textJaziri, Faouzi, David R. C. Hill, Nicolas Parisot, Jeremie Denonfoux, Eric Dugat-Bony, Eric Peyretaillade, and Pierre Peyret. "MetaExploArrays: A Large-Scale Oligonucleotide Probe Design Software for Explorative DNA Microarrays." In 2012 13th International Conference on Parallel and Distributed Computing Applications and Technologies (PDCAT). IEEE, 2012. http://dx.doi.org/10.1109/pdcat.2012.94.
Full textOno, Naoaki, Shingo Suzuki, Chikara Furusawa, Hiroshi Shimizu, and Tetsuya Yomo. "Quantitative expression analysis using oligonucleotide microarrays based on a physico-chemical model." In 3d International ICST Conference on Bio-Inspired Models of Network, Information, and Computing Systems. ICST, 2008. http://dx.doi.org/10.4108/icst.bionetics2008.4750.
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