Journal articles on the topic 'Novel Python package'
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Biová, Jana, Nicholas Dietz, Yen On Chan, Trupti Joshi, Kristin Bilyeu, and Mária Škrabišová. "AccuCalc: A Python Package for Accuracy Calculation in GWAS." Genes 14, no. 1 (January 1, 2023): 123. http://dx.doi.org/10.3390/genes14010123.
Full textSTAUDT, CHRISTIAN L., ALEKSEJS SAZONOVS, and HENNING MEYERHENKE. "NetworKit: A tool suite for large-scale complex network analysis." Network Science 4, no. 4 (December 2016): 508–30. http://dx.doi.org/10.1017/nws.2016.20.
Full textBodory, Hugo, Hannah Busshoff, and Michael Lechner. "High Resolution Treatment Effects Estimation: Uncovering Effect Heterogeneities with the Modified Causal Forest." Entropy 24, no. 8 (July 28, 2022): 1039. http://dx.doi.org/10.3390/e24081039.
Full textJadoul, Yannick, Diandra Duengen, and Andrea Ravignani. "Parselmouth for bioacoustics: Integrating Praat into the Python scientific ecosystem." Journal of the Acoustical Society of America 151, no. 4 (April 2022): A29. http://dx.doi.org/10.1121/10.0010550.
Full textRomano, Joseph D., Trang T. Le, William La Cava, John T. Gregg, Daniel J. Goldberg, Praneel Chakraborty, Natasha L. Ray, Daniel Himmelstein, Weixuan Fu, and Jason H. Moore. "PMLB v1.0: an open-source dataset collection for benchmarking machine learning methods." Bioinformatics 38, no. 3 (October 22, 2021): 878–80. http://dx.doi.org/10.1093/bioinformatics/btab727.
Full textDallilar, Y., S. von Fellenberg, M. Bauboeck, P. T. de Zeeuw, A. Drescher, F. Eisenhauer, R. Genzel, et al. "Flaremodel: An open-source Python package for one-zone numerical modelling of synchrotron sources." Astronomy & Astrophysics 658 (February 2022): A111. http://dx.doi.org/10.1051/0004-6361/202142458.
Full textBucur, C. "Artificial intelligence driven speed controller for DC motor in series." Scientific Bulletin of Naval Academy XIV, no. 2 (December 15, 2021): 83–88. http://dx.doi.org/10.21279/1454-864x-21-i2-007.
Full textGruenstaeudl, Michael. "annonex2embl: automatic preparation of annotated DNA sequences for bulk submissions to ENA." Bioinformatics 36, no. 12 (March 30, 2020): 3841–48. http://dx.doi.org/10.1093/bioinformatics/btaa209.
Full textHeybrock, Simon, Owen Arnold, Igor Gudich, Daniel Nixon, and Neil Vaytet. "Scipp: Scientific data handling with labeled multi-dimensional arrays for C++ and Python." Journal of Neutron Research 22, no. 2-3 (October 20, 2020): 169–81. http://dx.doi.org/10.3233/jnr-190131.
Full textReininghaus, Maximilian, and Ralf Ulrich. "CORSIKA 8 – Towards a modern framework for the simulation of extensive air showers." EPJ Web of Conferences 210 (2019): 02011. http://dx.doi.org/10.1051/epjconf/201921002011.
Full textChoudhary, Saket. "pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive." F1000Research 8 (April 23, 2019): 532. http://dx.doi.org/10.12688/f1000research.18676.1.
Full textRadu, Cristian, Ioana D. Vlaicu, and Andrei C. Kuncser. "A new method for obtaining the magnetic shape anisotropy directly from electron tomography images." Beilstein Journal of Nanotechnology 13 (July 5, 2022): 590–98. http://dx.doi.org/10.3762/bjnano.13.51.
Full textTice, Alexander K., David Žihala, Tomáš Pánek, Robert E. Jones, Eric D. Salomaki, Serafim Nenarokov, Fabien Burki, et al. "PhyloFisher: A phylogenomic package for resolving eukaryotic relationships." PLOS Biology 19, no. 8 (August 6, 2021): e3001365. http://dx.doi.org/10.1371/journal.pbio.3001365.
Full textChen, Danze, Qianqian Zhao, Leiming Jiang, Shuaiyuan Liao, Zhigang Meng, and Jianzhen Xu. "TGStools: A Bioinformatics Suit to Facilitate Transcriptome Analysis of Long Reads from Third Generation Sequencing Platform." Genes 10, no. 7 (July 10, 2019): 519. http://dx.doi.org/10.3390/genes10070519.
Full textDomanskyi, Sergii, Alex Hakansson, Thomas J. Bertus, Giovanni Paternostro, and Carlo Piermarocchi. "Digital Cell Sorter (DCS): a cell type identification, anomaly detection, and Hopfield landscapes toolkit for single-cell transcriptomics." PeerJ 9 (January 13, 2021): e10670. http://dx.doi.org/10.7717/peerj.10670.
Full textSong, Sungyoon, Sungchul Hwang, Baekkyeong Ko, Seungtae Cha, and Gilsoo Jang. "Novel Transient Power Control Schemes for BTB VSCs to Improve Angle Stability." Applied Sciences 8, no. 8 (August 11, 2018): 1350. http://dx.doi.org/10.3390/app8081350.
Full textKreklow, Jennifer. "Facilitating radar precipitation data processing, assessment and analysis: a GIS-compatible python approach." Journal of Hydroinformatics 21, no. 4 (May 15, 2019): 652–70. http://dx.doi.org/10.2166/hydro.2019.048.
Full textBakurov, Illya, Marco Buzzelli, Mauro Castelli, Leonardo Vanneschi, and Raimondo Schettini. "General Purpose Optimization Library (GPOL): A Flexible and Efficient Multi-Purpose Optimization Library in Python." Applied Sciences 11, no. 11 (May 23, 2021): 4774. http://dx.doi.org/10.3390/app11114774.
Full textCheon, Minjong, Hyodong Ha, Ook Lee, and Changbae Mun. "A Novel Hybrid Deep Learning Approach to Code Generation Aimed at Mitigating the Real-Time Network Attack in the Mobile Experiment Via GRU-LM and Word2vec." Mobile Information Systems 2022 (September 29, 2022): 1–11. http://dx.doi.org/10.1155/2022/3999868.
Full textBrennan, S. J., and M. Fraser. "The Automated Photometry of Transients pipeline (AutoPhOT)." Astronomy & Astrophysics 667 (November 2022): A62. http://dx.doi.org/10.1051/0004-6361/202243067.
Full textJain, Manju, C. S. Rai, and Jai Jain. "A Novel Method for Differential Prognosis of Brain Degenerative Diseases Using Radiomics-Based Textural Analysis and Ensemble Learning Classifiers." Computational and Mathematical Methods in Medicine 2021 (August 5, 2021): 1–13. http://dx.doi.org/10.1155/2021/7965677.
Full textKern, Fabian, Tobias Fehlmann, Jeffrey Solomon, Louisa Schwed, Nadja Grammes, Christina Backes, Kendall Van Keuren-Jensen, David Wesley Craig, Eckart Meese, and Andreas Keller. "miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems." Nucleic Acids Research 48, W1 (May 6, 2020): W521—W528. http://dx.doi.org/10.1093/nar/gkaa309.
Full textPaardekooper, Sijme-Jan, Colin P. McNally, and Francesco Lovascio. "Polydisperse streaming instability – II. Methods for solving the linear stability problem." Monthly Notices of the Royal Astronomical Society 502, no. 2 (January 19, 2021): 1579–95. http://dx.doi.org/10.1093/mnras/stab111.
Full textOchoa, Rodrigo, and Pilar Cossio. "PepFun: Open Source Protocols for Peptide-Related Computational Analysis." Molecules 26, no. 6 (March 16, 2021): 1664. http://dx.doi.org/10.3390/molecules26061664.
Full textCui, Kaiming, Junjie Liu, Fabo Feng, and Jifeng Liu. "Identify Light-curve Signals with Deep Learning Based Object Detection Algorithm. I. Transit Detection." Astronomical Journal 163, no. 1 (December 17, 2021): 23. http://dx.doi.org/10.3847/1538-3881/ac3482.
Full textAlexandre, Leonardo, Rafael S. Costa, and Rui Henriques. "DISA tool: Discriminative and informative subspace assessment with categorical and numerical outcomes." PLOS ONE 17, no. 10 (October 19, 2022): e0276253. http://dx.doi.org/10.1371/journal.pone.0276253.
Full textRivas-Barragan, Daniel, Sarah Mubeen, Francesc Guim Bernat, Martin Hofmann-Apitius, and Daniel Domingo-Fernández. "Drug2ways: Reasoning over causal paths in biological networks for drug discovery." PLOS Computational Biology 16, no. 12 (December 2, 2020): e1008464. http://dx.doi.org/10.1371/journal.pcbi.1008464.
Full textHeller, David, and Martin Vingron. "SVIM: structural variant identification using mapped long reads." Bioinformatics 35, no. 17 (January 21, 2019): 2907–15. http://dx.doi.org/10.1093/bioinformatics/btz041.
Full textCollonge, M., P. Busca, P. Fajardo, and M. Williams. "Monte Carlo simulations for XIDer, a novel digital integration X-ray detector for the next generation of synchrotron radiation sources." Journal of Instrumentation 17, no. 01 (January 1, 2022): C01037. http://dx.doi.org/10.1088/1748-0221/17/01/c01037.
Full textShen, Zeyang, Marten A. Hoeksema, Zhengyu Ouyang, Christopher Benner, and Christopher K. Glass. "MAGGIE: leveraging genetic variation to identify DNA sequence motifs mediating transcription factor binding and function." Bioinformatics 36, Supplement_1 (July 1, 2020): i84—i92. http://dx.doi.org/10.1093/bioinformatics/btaa476.
Full textCeschin, Rafael, Ashok Panigrahy, and Vanathi Gopalakrishnan. "sfDM: Open-Source Software for Temporal Analysis and Visualization of Brain Tumor Diffusion MR Using Serial Functional Diffusion Mapping." Cancer Informatics 14s2 (January 2015): CIN.S17293. http://dx.doi.org/10.4137/cin.s17293.
Full textLockhart, Brandon, Jinglin Peng, Weiyuan Wu, Jiannan Wang, and Eugene Wu. "Explaining inference queries with bayesian optimization." Proceedings of the VLDB Endowment 14, no. 11 (July 2021): 2576–85. http://dx.doi.org/10.14778/3476249.3476304.
Full textCluet, David, Ikram Amri, Blandine Vergier, Jérémie Léault, Astrid Audibert, Clémence Grosjean, Dylan Calabrési, and Martin Spichty. "A Quantitative Tri-fluorescent Yeast Two-hybrid System: From Flow Cytometry to In cellula Affinities." Molecular & Cellular Proteomics 19, no. 4 (February 3, 2020): 701–15. http://dx.doi.org/10.1074/mcp.tir119.001692.
Full textMehdi, Tahmid F., Gurdeep Singh, Jennifer A. Mitchell, and Alan M. Moses. "Variational infinite heterogeneous mixture model for semi-supervised clustering of heart enhancers." Bioinformatics 35, no. 18 (February 7, 2019): 3232–39. http://dx.doi.org/10.1093/bioinformatics/btz064.
Full textZhao, Zhengqiao, Stephen Woloszynek, Felix Agbavor, Joshua Chang Mell, Bahrad A. Sokhansanj, and Gail L. Rosen. "Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network." PLOS Computational Biology 17, no. 9 (September 22, 2021): e1009345. http://dx.doi.org/10.1371/journal.pcbi.1009345.
Full textMiller, Tim B., and Pieter van Dokkum. "Bayesian Fitting of Multi-Gaussian Expansion Models to Galaxy Images." Astrophysical Journal 923, no. 1 (December 1, 2021): 124. http://dx.doi.org/10.3847/1538-4357/ac2b30.
Full textMoyer, Devlin, Alan R. Pacheco, David B. Bernstein, and Daniel Segrè. "Stoichiometric Modeling of Artificial String Chemistries Reveals Constraints on Metabolic Network Structure." Journal of Molecular Evolution 89, no. 7 (July 6, 2021): 472–83. http://dx.doi.org/10.1007/s00239-021-10018-0.
Full textGumbsch, Thomas, Christian Bock, Michael Moor, Bastian Rieck, and Karsten Borgwardt. "Enhancing statistical power in temporal biomarker discovery through representative shapelet mining." Bioinformatics 36, Supplement_2 (December 2020): i840—i848. http://dx.doi.org/10.1093/bioinformatics/btaa815.
Full textSchindler, Daniel, Ted Moldenhawer, Maike Stange, Valentino Lepro, Carsten Beta, Matthias Holschneider, and Wilhelm Huisinga. "Analysis of protrusion dynamics in amoeboid cell motility by means of regularized contour flows." PLOS Computational Biology 17, no. 8 (August 23, 2021): e1009268. http://dx.doi.org/10.1371/journal.pcbi.1009268.
Full textHiggins, Jenny A., Madison Lands, Taryn M. Valley, Emma Carpenter, and Laura Jacques. "Real-Time Effects of Payer Restrictions on Reproductive Healthcare: A Qualitative Analysis of Cost-Related Barriers and Their Consequences among U.S. Abortion Seekers on Reddit." International Journal of Environmental Research and Public Health 18, no. 17 (August 26, 2021): 9013. http://dx.doi.org/10.3390/ijerph18179013.
Full textRieger, Marcel. "Design Pattern for Analysis Automation on Distributed Resources using Luigi Analysis Workflows." EPJ Web of Conferences 245 (2020): 05025. http://dx.doi.org/10.1051/epjconf/202024505025.
Full textzadeh, Zeinab Khorasani, and Mohamed M. Ouf. "Optimizing occupant-centric building controls given stochastic occupant behaviour." Journal of Physics: Conference Series 2069, no. 1 (November 1, 2021): 012140. http://dx.doi.org/10.1088/1742-6596/2069/1/012140.
Full textMora-Márquez, Fernando, José Luis Vázquez-Poletti, and Unai López de Heredia. "NGScloud2: optimized bioinformatic analysis using Amazon Web Services." PeerJ 9 (April 16, 2021): e11237. http://dx.doi.org/10.7717/peerj.11237.
Full textWeis, Caroline, Max Horn, Bastian Rieck, Aline Cuénod, Adrian Egli, and Karsten Borgwardt. "Topological and kernel-based microbial phenotype prediction from MALDI-TOF mass spectra." Bioinformatics 36, Supplement_1 (July 1, 2020): i30—i38. http://dx.doi.org/10.1093/bioinformatics/btaa429.
Full textTerrasi, Andrea, Swathi Subramanian, Christine Klement, Sruthi Ramesh, Heike Bollig, Chiara Falcomatà, Katja Steiger, et al. "Abstract 2350: Foxj1 is a new master regulator of activated PI3K pathway pancreatic cancer." Cancer Research 82, no. 12_Supplement (June 15, 2022): 2350. http://dx.doi.org/10.1158/1538-7445.am2022-2350.
Full textLiu, Qian, Zequan Zheng, Jiabin Zheng, Qiuyi Chen, Guan Liu, Sihan Chen, Bojia Chu, et al. "Health Communication Through News Media During the Early Stage of the COVID-19 Outbreak in China: Digital Topic Modeling Approach." Journal of Medical Internet Research 22, no. 4 (April 28, 2020): e19118. http://dx.doi.org/10.2196/19118.
Full textWaters, Michael R., Matthew Inkman, Perry W. Grigsby, Stephanie Markovina, Julie K. Schwarz, and Jin Zhang. "Abstract 3475: An 18-gene expression model predicts resistance to standard of care therapy on 3-month follow up 18FDG-PET in locally advanced cervical cancer." Cancer Research 82, no. 12_Supplement (June 15, 2022): 3475. http://dx.doi.org/10.1158/1538-7445.am2022-3475.
Full textSeal, Souvik, Qunhua Li, Elle Butler Basner, Laura M. Saba, and Katerina Kechris. "RCFGL: Rapid Condition adaptive Fused Graphical Lasso and application to modeling brain region co-expression networks." PLOS Computational Biology 19, no. 1 (January 6, 2023): e1010758. http://dx.doi.org/10.1371/journal.pcbi.1010758.
Full textAli, Mehdi, Charles Tapley Hoyt, Daniel Domingo-Fernández, Jens Lehmann, and Hajira Jabeen. "BioKEEN: a library for learning and evaluating biological knowledge graph embeddings." Bioinformatics 35, no. 18 (February 15, 2019): 3538–40. http://dx.doi.org/10.1093/bioinformatics/btz117.
Full textPark, Soo, Brian M. Reilly, Timothy Luger, Dan Zhao, Robert J. Fram, Ajeeta B. Dash, and Rafael Bejar. "DNA Methylation Analysis before and during Treatment with Azacitidine Plus Pevonedistat or Azacitidine Alone in Patients with MDS, CMML, and AML Previously Untreated with Hypomethylating Agents." Blood 136, Supplement 1 (November 5, 2020): 29–30. http://dx.doi.org/10.1182/blood-2020-134484.
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