Academic literature on the topic 'Norovirus genome'
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Journal articles on the topic "Norovirus genome":
Thorne, Lucy G., and Ian G. Goodfellow. "Norovirus gene expression and replication." Journal of General Virology 95, no. 2 (February 1, 2014): 278–91. http://dx.doi.org/10.1099/vir.0.059634-0.
Tohma, Kentaro, Cara J. Lepore, Magaly Martinez, Juan I. Degiuseppe, Pattara Khamrin, Mayuko Saito, Holger Mayta, et al. "Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints." PLOS Pathogens 17, no. 7 (July 13, 2021): e1009744. http://dx.doi.org/10.1371/journal.ppat.1009744.
Ebenezer, Oluwakemi, Maryam A. Jordaan, Nkululeko Damoyi, and Michael Shapi. "Discovery of Potential Inhibitors for RNA-Dependent RNA Polymerase of Norovirus: Virtual Screening, and Molecular Dynamics." International Journal of Molecular Sciences 22, no. 1 (December 26, 2020): 171. http://dx.doi.org/10.3390/ijms22010171.
Rohayem, Jacques, Ivonne Robel, Katrin Jäger, Ulrike Scheffler, and Wolfram Rudolph. "Protein-Primed and De Novo Initiation of RNA Synthesis by Norovirus 3Dpol." Journal of Virology 80, no. 14 (July 15, 2006): 7060–69. http://dx.doi.org/10.1128/jvi.02195-05.
Ford-Siltz, Lauren, Lisa Mullis, Yasser Sanad, Kentaro Tohma, Cara Lepore, Marli Azevedo, and Gabriel Parra. "Genomics Analyses of GIV and GVI Noroviruses Reveal the Distinct Clustering of Human and Animal Viruses." Viruses 11, no. 3 (March 1, 2019): 204. http://dx.doi.org/10.3390/v11030204.
Haga, Kei, Akira Fujimoto, Reiko Takai-Todaka, Motohiro Miki, Yen Hai Doan, Kosuke Murakami, Masaru Yokoyama, Kazuyoshi Murata, Akira Nakanishi, and Kazuhiko Katayama. "Functional receptor molecules CD300lf and CD300ld within the CD300 family enable murine noroviruses to infect cells." Proceedings of the National Academy of Sciences 113, no. 41 (September 28, 2016): E6248—E6255. http://dx.doi.org/10.1073/pnas.1605575113.
Brown, Julianne R., Sunando Roy, Christopher Ruis, Erika Yara Romero, Divya Shah, Rachel Williams, and Judy Breuer. "Norovirus Whole-Genome Sequencing by SureSelect Target Enrichment: a Robust and Sensitive Method." Journal of Clinical Microbiology 54, no. 10 (August 3, 2016): 2530–37. http://dx.doi.org/10.1128/jcm.01052-16.
Vashist, Surender, Luis Urena, Mariam B. Gonzalez-Hernandez, Jayoung Choi, Alexis de Rougemont, Joana Rocha-Pereira, Johan Neyts, Seungmin Hwang, Christiane E. Wobus, and Ian Goodfellow. "Molecular Chaperone Hsp90 Is a Therapeutic Target for Noroviruses." Journal of Virology 89, no. 12 (April 8, 2015): 6352–63. http://dx.doi.org/10.1128/jvi.00315-15.
McCormick, Christopher J., Omar Salim, Paul R. Lambden, and Ian N. Clarke. "Translation Termination Reinitiation between Open Reading Frame 1 (ORF1) and ORF2 Enables Capsid Expression in a Bovine Norovirus without the Need for Production of Viral Subgenomic RNA." Journal of Virology 82, no. 17 (June 25, 2008): 8917–21. http://dx.doi.org/10.1128/jvi.02362-07.
Vakulenko, Yulia A., Artem V. Orlov, and Alexander N. Lukashev. "Patterns and Temporal Dynamics of Natural Recombination in Noroviruses." Viruses 15, no. 2 (January 28, 2023): 372. http://dx.doi.org/10.3390/v15020372.
Dissertations / Theses on the topic "Norovirus genome":
Wong, Tse Hua Nicholas. "Investigation of in-hospital norovirus transmission using whole genome sequencing." Thesis, University of Oxford, 2014. http://ora.ox.ac.uk/objects/uuid:0c059680-337e-4a70-aab7-5b7d7e483962.
McFadden, Nora Ann. "Identification and characterisation of an overlapping open reading frame (ORF4) within the murine norovirus genome." Thesis, Imperial College London, 2010. http://hdl.handle.net/10044/1/10724.
Blundell, Richard James. "Investigation into genome-scale ordered RNA structure (GORS) in murine norovirus and other positive-stranded RNA viruses." Thesis, University of Edinburgh, 2010. http://hdl.handle.net/1842/4411.
Aleksandra, Patić. "Značaj molekularne dijagnostike u dokazivanju virusnog gastrointestinalnog sindroma u Vojvodini." Phd thesis, Univerzitet u Novom Sadu, Medicinski fakultet u Novom Sadu, 2018. https://www.cris.uns.ac.rs/record.jsf?recordId=106859&source=NDLTD&language=en.
Introduction: Viral gastrointestinal syndrome is a current ongoing health problem worldwide. This is true of both developed and developing countries, especially underdeveloped ones where it is the second leading cause of mortality. Sudden onset of the disease—accompanied by the occurrence of large numbers of liquid stools, nausea, vomiting, abdominal pain, fever, and exhaustion—leads to dehydration. A fatal outcome can occur in all age groups of patients, especially very young children, the elderly, and the immuno-deficient, unless an accurate etiological diagnosis of the disease is quickly established, followed by a prompt institution of fluid and electrolyte placement, and implementation of other symptomatic therapy measures. Quick establishment of an accurate diagnosis, which is best achieved using the real-time PCR test, prevents the onset of complications, including a potentially fatal outcome of the disease. Simultaneously, it enables the implementation of appropriate epidemiological measures to prevent epidemic outbreaks and their spread. The aim of this study was to accurately determine the incidence of viral gastrointestinal syndrome in Vojvodina and the frequency of epidemic and sporadic occurrence of this disease. The aim was also to set up an algorithm for the application of the real-time PCR test in diagnostics of viral gastrointestinal syndrome in future work. Likewise, the aim was to carry out genetic typing and determine phylogenetic affiliation of the virus using molecular analysis and sequencing of parts of genomes from positive stool samples. Material and Methods: During a five-year study, 1003 patients with symptoms of viral diarrheal syndrome, aged from one month to more than 90 years old, were examined using molecular real-time PCR test. They were screened for rota, noro, astro, and enteric adenoviruses. Based on the data from survey questionnaires and medical case history, all clinical indicators were meticulously analyzed (disease occurrence during the year, disease duration, symptoms). The assessment of the clinical severity was carried out according to the Vesikari Clinical Severity Scoring scale. All data were compared according to the type of the viral causing agent, age of the patients, duration of research in years, and epidemic and sporadic occurrence of the disease. Obtained data were statistically analyzed, tabulated, and graphically displayed. Results: In a five-year period, a sample of 1003 patients of different ages was screened for four different viral causing agents of diarrheal syndrome (rota, noro, astro, and enteric adenoviruses) using the real-time PCR test. Viral diarrheal syndrome was confirmed in 709 patients (70.69%). The most commonly found were rotavirus infections in 28.81% of the cases. Rotaviruses were statistically significantly most common in children younger than 5 years old (38.90%), but were also found in high percentage in children aged 6-14 years old (24.83%). Children under 5 years of age had statistically significantly highest clinical severity and fever, and were more frequently hospitalized. In addition to higher fever in patients with rotavirus, clinical severity in these patients was also higher, and the disease lasted longer than in patients with other viruses. Norovirus infections were reported in 23.03% of the subjects, statistically significantly more frequently in adults over 20 years of age. Regarding the clinical symptoms in these patients, nausea, vomiting, and abdominal pain were statistically significantly more common than in patients with other viruses. Noroviruses were significantly more common as causing agents of epidemic disease outbreaks. Astrovirus was found in a significantly smaller number of patients (in 2.29%), and only in children under 5 years of age and children aged 6-14 years old. Enteric adenovirus infections were reported in 13.36% of the subjects. They were most commonly found in children younger than 5, and those aged 6- 14 years old. Adenovirus sufferers had statistically significantly milder clinical disease. Two viral causing agents in the stool sample were found in 3.19% of the subjects, usually during an epidemic disease outbreak. These patients had a significantly more severe clinical disease. Highest numbers of sufferers from diarrheal syndrome occurred during the cold months, although they were diagnosed throughout the year. In a five-year period, 22epidemics in collective groups and 9 family epidemics were identified. Epidemic outbreaks of the disease were statistically significantly most frequent in the elderly patients (older than 50), while sporadic occurrences were statistically significantly most frequent in children. Representative samples positive for rota, noro, astro, or adenoviruses were selected in order to confirm the accuracy of virus diagnostics in samples tested by the real-time PCR test, and perform genotyping as well as more detailed molecular analyses. Parts of the genomes of these samples were amplified and then sequenced. Sequenced rotavirus isolates belonged to group A and types G1P[8], G2P[4], G3P[8], and G9P[8]. Sequenced norovirus isolates belonged to genogroup I type 2, and genogroup II types 1, 2, 4, and 17. Sequenced astrovirus isolates belonged to the group of classical astroviruses and types 1, 4, and 5. Sequenced adenovirus isolates belonged to group F and types 40 and 41, as well as group C type 2. The affiliation of the obtained sequences in this study was further confirmed by creating a phylogenetic tree for sequences positive for rota, noro, astro, or adenoviruses. Conclusion: The incidence of viral diarrheal syndrome in Vojvodina (70.69%) is very high—higher than what was assumed at the time of the thesis submission (in the hypothesis). The real-time PCR test should be regularly used in future diagnostic work, since it leads to rapid diagnostics even if viruses are present in small numbers in liquid stool samples, as determined in the course of this diagnostic study. The investigated viruses should be regularly tested in patients with diarrheal syndrome belonging to all age groups during both epidemic and sporadic occurrences of the disease.
Dearlove, Bethany Lorna. "Genome evolution and epidemiology of human pathogens." Thesis, University of Oxford, 2013. http://ora.ox.ac.uk/objects/uuid:af385d35-ca1a-4f4c-ae1a-0ad954cab928.
Do, nascimento Julie. "Dreissena polymorpha comme outil pour l’évaluation du risque viral." Electronic Thesis or Diss., Reims, 2024. http://www.theses.fr/2024REIMS002.
Freshwater bodies are subject to fecal contamination from a variety of sources. Among these contaminants, enteric viruses, including Noroviruses, are responsible for numerous gastroenteritis epidemics worldwide every year. The current fecal contamination indicators (i.e., E. coli) recommended by various regulations are proving unreliable for estimating the viral risk in water. Other indicators, with characteristics close to those of enteric viruses, such as specific-F RNA bacteriophages (FRNAPH), have been proposed to assess this viral risk. However, the analysis of infectious FRANPH in water comes up against certain limitations, notably linked to the hydrodynamic characteristics of aquatic environments. In order to overcome these limitations, one solution would be to carry out analyses using sensors that accumulate and integrate these targets. In this context, the aim of this work is to test the interest of a freshwater bivalve mollusc, the zebra mussel (Dreissena polymorpha), widely used for chemical and ecotoxic monitoring of water bodies, as a biological sensor for assessing and monitoring viral contamination of water bodies. The strategy followed consisted in i) characterizing the kinetics of accumulation and depuration of infectious FRNAPH in mussels under controlled laboratory and in situ conditions, ii) defining a toxico-kinetic model to formalize the relationship between the concentration of infectious FRNAPH in mussels and the level of exposure (concentration in water), iii) assess viral contamination of water bodies on a broad geographical scale, and finally iv) evaluate biosensor-infectious FRNAPH coupling to represent contamination of water bodies by the NoV genome.Data obtained in the laboratory and in situ underline the very rapid accumulation of infectious FRANPH by mussels, with equilibration with its environment in less than 48 hours. What's more, accumulations are proportional to the level of exposure over a very wide concentration range, and the infectious FRANPH signal remains in mussel tissues for several days after exposure. All these data underline the interest of D. polymorpha as an accumulator and integrator system. The definition of a single compartment toxicokinetic model, based on what is known for chemical contaminants, has enabled us to define particularly interesting in situ bioaccumulation factors (BCF ≈ 1,000) and authorizing a real in situ contribution. Using an active approach (caging of calibrated organisms), the project validated the contribution of zebra mussel as a biosensor for assessing infectious FRNAPH concentrations in numerous water bodies, as well as its contribution to viral risk assessment vis à vis the presence of the NoV genome
Naran, Sarnai. "Sequence analysis of full-length genome of norovirus recombinants in Taiwan." 2007. http://www.cetd.com.tw/ec/thesisdetail.aspx?etdun=U0001-2908200711553400.
Naran, Sarnai, and 莎日娜. "Sequence analysis of full-length genome of norovirus recombinants in Taiwan." Thesis, 2007. http://ndltd.ncl.edu.tw/handle/30348163934701598192.
臺灣大學
醫學檢驗暨生物技術學研究所
95
Human norovirus (NoV) causes gastroenteritis in humans in all age groups. NoV is transmitted through fecal contamination of food and water, and secondary person-to-person spread is common. Annual epidemics cause severe morbidity and even mortality, especially in developing countries. In recent years several naturally occurring recombinant NoVs have been reported around the world. Considering the fact that recombination occur much more often than it was thought to be, further study of the diversity and ongoing recombination of NoV may bring tremendous assistance for epidemiological studies and more importantly bring medical and healthcare attention for diminishing worldwide epidemics. In this study the full-length genome of nine norovirus recombinants, isolated from stool specimens from 2002, 2003, and 2006 in Taiwan. Three PCR fragments covering the full-length genome were obtained for eight of the isolates. After the nucleotide sequences were determined, the relationships among different noroviruses (NoVs) in different genes were studied by phylogenetic analysis. The recombination break points were revealed by SimPlot analysis. According to the polymerase gene-based phylogenetic analysis, five isolates Taipei/0212/2003/TW, Taipei/2339/2002/TW, Taipei/0089/2003/TW, Taipei/0510/2002/TW, and Taipei/1969/2002/TW belonged to the recombinants with the GIIb polymerase gene. By capsid gene-based phylogenetic analysis, the above described GIIb polymerase recombinants clustered onto two distinct genotypes, Taipei/0089/2003/TW Taipei/0510/2002/TW, Taipei/1969/2002/TW, and Taipei/0212/2003/TW clustered with GII/3 strains, Taipei/2339/2002/TW clustered with GII/2 strains. Three isolates Taipei/0760/2002/TW, Taipei/1047/2006/TW, and Taipei/0898/2006/TW, clustered with GII/12 and GII/10 strains and shared 98% identity in polymerase gene. According to the capsid gene-based analysis, Taipei/0760/2002/TW, Taipei/1047/2006/TW, and Taipei/0898/2006/TW clustered with GII/10, GII/12, and GII/4 strains, respectively. Taken together, these results confirmed the existence of naturally occurring recombinant NoVs in Taiwan and this is the first evidence of naturally occurring recombinant NoV infection in Taiwan.
Book chapters on the topic "Norovirus genome":
Kingsley, David H. "Foodborne Noroviruses." In Genomes of Foodborne and Waterborne Pathogens, 237–45. Washington, DC: ASM Press, 2014. http://dx.doi.org/10.1128/9781555816902.ch16.
Schreier, Eckart. "Genome Diversity and Host Interaction of Noroviruses." In Genome Plasticity and Infectious Diseases, 191–213. Washington, DC, USA: ASM Press, 2014. http://dx.doi.org/10.1128/9781555817213.ch12.
Wu, Kaiyue, and Alexander A. Green. "Detection of Norovirus Using Paper-Based Cell-Free Systems." In Cell-Free Gene Expression, 375–90. New York, NY: Springer US, 2022. http://dx.doi.org/10.1007/978-1-0716-1998-8_23.
Amir Yunus, Muhammad. "Molecular Mechanisms for Norovirus Genome Replication." In Norovirus. IntechOpen, 2021. http://dx.doi.org/10.5772/intechopen.96032.
Brown, Julianne R., and Judith Breuer. "Whole Genome Sequencing Approach to Genotyping and Epidemiology." In The Norovirus, 65–78. Elsevier, 2017. http://dx.doi.org/10.1016/b978-0-12-804177-2.00005-1.
Rani, Manisha, Sushma Rajyalakshmi, Sunitha Pakalapaty, and Nagamani Kammilli. "Norovirus Structure and Classification." In Norovirus. IntechOpen, 2021. http://dx.doi.org/10.5772/intechopen.98216.
Oxford, John, Paul Kellam, and Leslie Collier. "Calciviruses: norovirus causing vomiting and diarrhoea." In Human Virology. Oxford University Press, 2016. http://dx.doi.org/10.1093/hesc/9780198714682.003.0009.
Conference papers on the topic "Norovirus genome":
Silva, Mauro, Diego Rodrigues, Bruno Pedroso, Yan Pimenta, Silas Oliveira, Laricy Vieira, Beatriz Silva, Alberto Olivares, José Leite, and Marcia Moraes. "FUT2 gene profile of children with acute gastroenteritis, HBGA non-secretors living in the Northwest Amazon region, and association with rotavirus A and norovirus infection." In International Symposium on Immunobiological. Instituto de Tecnologia em Imunobiológicos, 2024. http://dx.doi.org/10.35259/isi.biomang.2024_63824.