Journal articles on the topic 'Network pathway'
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Milano, Marianna, Giuseppe Agapito, and Mario Cannataro. "Challenges and Limitations of Biological Network Analysis." BioTech 11, no. 3 (July 7, 2022): 24. http://dx.doi.org/10.3390/biotech11030024.
Full textZheng, Fang, Le Wei, Liang Zhao, and FuChuan Ni. "Pathway Network Analysis of Complex Diseases Based on Multiple Biological Networks." BioMed Research International 2018 (July 30, 2018): 1–12. http://dx.doi.org/10.1155/2018/5670210.
Full textWong, Yung-Hao, Chia-Chou Wu, Chih-Lung Lin, Ting-Shou Chen, Tzu-Hao Chang, and Bor-Sen Chen. "Applying NGS Data to Find Evolutionary Network Biomarkers from the Early and Late Stages of Hepatocellular Carcinoma." BioMed Research International 2015 (2015): 1–27. http://dx.doi.org/10.1155/2015/391475.
Full textVilleneuve, Daniel L., Michelle M. Angrish, Marie C. Fortin, Ioanna Katsiadaki, Marc Leonard, Luigi Margiotta-Casaluci, Sharon Munn, et al. "Adverse outcome pathway networks II: Network analytics." Environmental Toxicology and Chemistry 37, no. 6 (May 7, 2018): 1734–48. http://dx.doi.org/10.1002/etc.4124.
Full textLoney, Fred, and Guanming Wu. "Automation of ReactomeFIViz via CyREST API." F1000Research 7 (May 2, 2018): 531. http://dx.doi.org/10.12688/f1000research.14776.1.
Full textLoney, Fred, and Guanming Wu. "Automation of ReactomeFIViz via CyREST API." F1000Research 7 (May 23, 2018): 531. http://dx.doi.org/10.12688/f1000research.14776.2.
Full textEllershaw, John, and Deborah Murphy. "The National Pathway Network of Palliative Care Pathways." Journal of integrated Care Pathways 7, no. 1 (April 2003): 11–13. http://dx.doi.org/10.1177/147322970300700104.
Full textCocco, Nicoletta, Mercè Llabrés, Mariana Reyes-Prieto, and Marta Simeoni. "MetNet: A two-level approach to reconstructing and comparing metabolic networks." PLOS ONE 16, no. 2 (February 12, 2021): e0246962. http://dx.doi.org/10.1371/journal.pone.0246962.
Full textLi, Chaoxing, Li Liu, and Valentin Dinu. "Pathways of topological rank analysis (PoTRA): a novel method to detect pathways involved in hepatocellular carcinoma." PeerJ 6 (April 9, 2018): e4571. http://dx.doi.org/10.7717/peerj.4571.
Full textLi, Xiao, Xu Feng, Chunkang Chang, Qi He, and Wu Lingyun. "Identification of microRNA-Regulated Pathways through a Integration of Mcrorna-mRNA Microarray and Bioinformatics Analysis in CD34+ Cells of Myelodysplastic Syndromes." Blood 124, no. 21 (December 6, 2014): 3238. http://dx.doi.org/10.1182/blood.v124.21.3238.3238.
Full textPita-Juárez, Yered, Gabriel Altschuler, Sokratis Kariotis, Wenbin Wei, Katjuša Koler, Claire Green, Rudolph E. Tanzi, and Winston Hide. "The Pathway Coexpression Network: Revealing pathway relationships." PLOS Computational Biology 14, no. 3 (March 19, 2018): e1006042. http://dx.doi.org/10.1371/journal.pcbi.1006042.
Full textKim, Kyung Soo, Dong Wook Jekarl, Jaeeun Yoo, Seungok Lee, Myungshin Kim, and Yonggoo Kim. "Immune gene expression networks in sepsis: A network biology approach." PLOS ONE 16, no. 3 (March 5, 2021): e0247669. http://dx.doi.org/10.1371/journal.pone.0247669.
Full textCheng, Qiong, and Alexander Zelikovsky. "Combinatorial Optimization Algorithms for Metabolic Networks Alignments and Their Applications." International Journal of Knowledge Discovery in Bioinformatics 2, no. 1 (January 2011): 1–23. http://dx.doi.org/10.4018/jkdb.2011010101.
Full textXie, Fuda, Mingxiang Xie, Yibing Yang, Miaomiao Zhang, Xiaojie Xu, Na Liu, Wei Xiao, and Jiangyong Gu. "Assessing the Anti-inflammatory Mechanism of Reduning Injection by Network Pharmacology." BioMed Research International 2020 (December 16, 2020): 1–13. http://dx.doi.org/10.1155/2020/6134098.
Full textShuey, Megan M., Rachel R. Xiang, M. Elizabeth Moss, Brigett V. Carvajal, Yihua Wang, Nicholas Camarda, Daniel Fabbri, et al. "Systems Approach to Integrating Preclinical Apolipoprotein E-Knockout Investigations Reveals Novel Etiologic Pathways and Master Atherosclerosis Network in Humans." Arteriosclerosis, Thrombosis, and Vascular Biology 42, no. 1 (January 2022): 35–48. http://dx.doi.org/10.1161/atvbaha.121.317071.
Full textJaeger, Savina, Junxia Min, Florian Nigsch, Miguel Camargo, Janna Hutz, Allen Cornett, Stephen Cleaver, Alan Buckler, and Jeremy L. Jenkins. "Causal Network Models for Predicting Compound Targets and Driving Pathways in Cancer." Journal of Biomolecular Screening 19, no. 5 (February 11, 2014): 791–802. http://dx.doi.org/10.1177/1087057114522690.
Full textKubal, Timothy Edward, Douglas D. Letson, Karen K. Fields, Richard M. Levine, Charles F. Andrews, John Turner Hamm, Diana Lachica, Riti Shimkhada, and John W. Peabody. "Building a provider network based on quality: The Moffitt Oncology Network initiative." Journal of Clinical Oncology 32, no. 30_suppl (October 20, 2014): 49. http://dx.doi.org/10.1200/jco.2014.32.30_suppl.49.
Full textAlcaraz, Nicolas, Markus List, Martin Dissing-Hansen, Marc Rehmsmeier, Qihua Tan, Jan Mollenhauer, Henrik J. Ditzel, and Jan Baumbach. "Robust de novo pathway enrichment with KeyPathwayMiner 5." F1000Research 5 (June 28, 2016): 1531. http://dx.doi.org/10.12688/f1000research.9054.1.
Full textWong, Yung-Hao, Cheng-Wei Li, and Bor-Sen Chen. "Evolution of Network Biomarkers from Early to Late Stage Bladder Cancer Samples." BioMed Research International 2014 (2014): 1–23. http://dx.doi.org/10.1155/2014/159078.
Full textFan, Wufeng, Yuhan Zhou, and Hao Li. "Pathway Interaction Network Analysis Identifies Dysregulated Pathways in Human Monocytes Infected by Listeria monocytogenes." Computational and Mathematical Methods in Medicine 2017 (2017): 1–8. http://dx.doi.org/10.1155/2017/3195348.
Full textNazha, Aziz, Bartlomiej Przychodzen, Hideki Makishima, Hetty E. Carraway, Bhumika J. Patel, Cassandra M. Hirsch, Michael Clemente, et al. "Network-Based Analysis of Exome Sequencing Mutations Identifies Molecular Subtypes of Myelodysplastic Syndromes." Blood 126, no. 23 (December 3, 2015): 611. http://dx.doi.org/10.1182/blood.v126.23.611.611.
Full textGerlee, P., T. Lundh, B. Zhang, and A. R. A. Anderson. "Gene divergence and pathway duplication in the metabolic network of yeast and digital organisms." Journal of The Royal Society Interface 6, no. 41 (March 18, 2009): 1233–45. http://dx.doi.org/10.1098/rsif.2008.0514.
Full textHicks, Chindo, Lucio Miele, Tejaswi Koganti, and Srinivasan Vijayakumar. "Comprehensive Assessment and Network Analysis of the Emerging Genetic Susceptibility Landscape of Prostate Cancer." Cancer Informatics 12 (January 2013): CIN.S12128. http://dx.doi.org/10.4137/cin.s12128.
Full textWindels, Sam F. L., Noël Malod-Dognin, and Nataša Pržulj. "Graphlet eigencentralities capture novel central roles of genes in pathways." PLOS ONE 17, no. 1 (January 25, 2022): e0261676. http://dx.doi.org/10.1371/journal.pone.0261676.
Full textShao, Min. "Construction of an miRNA-Regulated Pathway Network Reveals Candidate Biomarkers for Postmenopausal Osteoporosis." Computational and Mathematical Methods in Medicine 2017 (2017): 1–9. http://dx.doi.org/10.1155/2017/9426280.
Full textTanabe, Shihori, Sabina Quader, Ryuichi Ono, Horacio Cabral, Kazuhiko Aoyagi, Akihiko Hirose, Hiroshi Yokozaki, and Hiroki Sasaki. "Molecular Network Profiling in Intestinal- and Diffuse-Type Gastric Cancer." Cancers 12, no. 12 (December 18, 2020): 3833. http://dx.doi.org/10.3390/cancers12123833.
Full textVandermeulen, Matthew D., and Paul J. Cullen. "Gene by Environment Interactions reveal new regulatory aspects of signaling network plasticity." PLOS Genetics 18, no. 1 (January 4, 2022): e1009988. http://dx.doi.org/10.1371/journal.pgen.1009988.
Full textLiu, Chuan, Fang-Fang Fan, Xuan-Hao Li, Wen-Xiang Wang, Ya Tu, and Yi Zhang. "Elucidation of the mechanism of action of the anticholecystitis effect of the Tibetan medicine “Dida” using network pharmacology." Tropical Journal of Pharmaceutical Research 19, no. 7 (November 17, 2020): 1449–57. http://dx.doi.org/10.4314/tjpr.v19i7.17.
Full textLiu, Chuan, Fang-Fang Fan, Xuan-Hao Li, Wen-Xiang Wang, Ya Tu, and Yi Zhang. "Elucidation of the mechanisms underlying the anticholecystitis effect of the Tibetan medicine “Dida” using Network pharmacology." Tropical Journal of Pharmaceutical Research 19, no. 9 (November 24, 2020): 1953–61. http://dx.doi.org/10.4314/tjpr.v19i9.22.
Full textBlucher, Aurora S., Shannon K. McWeeney, Lincoln Stein, and Guanming Wu. "Visualization of drug target interactions in the contexts of pathways and networks with ReactomeFIViz." F1000Research 8 (June 20, 2019): 908. http://dx.doi.org/10.12688/f1000research.19592.1.
Full textWu, Xiaogang, Christoph Reinhard, Shuyu D. Li, Hui Huang, Tao Wei, Ragini Pandey, and Jake Y. Chen. "Network Expansion and Pathway Enrichment Analysis towards Biologically Significant Findings from Microarrays." Journal of Integrative Bioinformatics 9, no. 2 (June 1, 2012): 113–25. http://dx.doi.org/10.1515/jib-2012-213.
Full textGogoi, Barbi, and S. P. Saikia. "Virtual Screening and Network Pharmacology-Based Study to Explore the Pharmacological Mechanism of Clerodendrum Species for Anticancer Treatment." Evidence-Based Complementary and Alternative Medicine 2022 (November 2, 2022): 1–17. http://dx.doi.org/10.1155/2022/3106363.
Full textKaniak, Aneta, Zhixiong Xue, Daniel Macool, Jeong-Ho Kim, and Mark Johnston. "Regulatory Network Connecting Two Glucose Signal Transduction Pathways in Saccharomyces cerevisiae." Eukaryotic Cell 3, no. 1 (February 2004): 221–31. http://dx.doi.org/10.1128/ec.3.1.221-231.2004.
Full textOgris, Christoph, Thomas Helleday, and Erik L. L. Sonnhammer. "PathwAX: a web server for network crosstalk based pathway annotation." Nucleic Acids Research 44, W1 (May 5, 2016): W105—W109. http://dx.doi.org/10.1093/nar/gkw356.
Full textShang, R. P., and W. Wang. "Investigating Dysregulated Pathways in Dilated Cardiomyopathy from Pathway Interaction Network." Russian Journal of Genetics 54, no. 2 (February 2018): 244–49. http://dx.doi.org/10.1134/s1022795418020151.
Full textYu, Liang, and Lin Gao. "Human Pathway-Based Disease Network." IEEE/ACM Transactions on Computational Biology and Bioinformatics 16, no. 4 (July 1, 2019): 1240–49. http://dx.doi.org/10.1109/tcbb.2017.2774802.
Full textArias, Alfonso Martinez, Anthony MC Browntand, and Keith Brennan. "Wnt signalling: pathway or network?" Current Opinion in Genetics & Development 9, no. 4 (August 1999): 447–54. http://dx.doi.org/10.1016/s0959-437x(99)80068-9.
Full textLi, Yong, Pankaj Agarwal, and Dilip Rajagopalan. "A global pathway crosstalk network." Bioinformatics 24, no. 12 (April 23, 2008): 1442–47. http://dx.doi.org/10.1093/bioinformatics/btn200.
Full textMeng, Ziqi, Xinkui Liu, Jiarui Wu, Wei Zhou, Kaihuan Wang, Zhiwei Jing, Shuyu Liu, Mengwei Ni, and Xiaomeng Zhang. "Mechanisms of Compound Kushen Injection for the Treatment of Lung Cancer Based on Network Pharmacology." Evidence-Based Complementary and Alternative Medicine 2019 (May 28, 2019): 1–15. http://dx.doi.org/10.1155/2019/4637839.
Full textAbedi, Maryam, and Yousof Gheisari. "Nodes with high centrality in protein interaction networks are responsible for driving signaling pathways in diabetic nephropathy." PeerJ 3 (October 1, 2015): e1284. http://dx.doi.org/10.7717/peerj.1284.
Full textGhulam, Ali, Xiujuan Lei, Min Guo, and Chen Bian. "Comprehensive Analysis of Features and Annotations of Pathway Databases." Current Bioinformatics 15, no. 8 (January 1, 2021): 803–20. http://dx.doi.org/10.2174/1574893615999200413123352.
Full textJusufi, Ilir, Christian Klukas, Andreas Kerren, and Falk Schreiber. "Guiding the interactive exploration of metabolic pathway interconnections." Information Visualization 11, no. 2 (September 19, 2011): 136–50. http://dx.doi.org/10.1177/1473871611405677.
Full textMedhora, Meetha, Anuradha Dhanasekaran, Phillip F. Pratt, Craig R. Cook, Laurel K. Dunn, Stephanie K. Gruenloh, and Elizabeth R. Jacobs. "Role of JNK in network formation of human lung microvascular endothelial cells." American Journal of Physiology-Lung Cellular and Molecular Physiology 294, no. 4 (April 2008): L676—L685. http://dx.doi.org/10.1152/ajplung.00496.2007.
Full textLee, Sangseon, Sangsoo Lim, Taeheon Lee, Inyoung Sung, and Sun Kim. "Cancer subtype classification and modeling by pathway attention and propagation." Bioinformatics 36, no. 12 (March 24, 2020): 3818–24. http://dx.doi.org/10.1093/bioinformatics/btaa203.
Full textMakolo, Angela U., and Temitayo A. Olagunju. "Computational identification of signaling pathways in protein interaction networks." F1000Research 4 (December 30, 2015): 1522. http://dx.doi.org/10.12688/f1000research.7591.1.
Full textTian, Haoyi, and Yun Tian. "The Study on the Action Mechanism of the Jinyingzi (Rosae Laevigatae Fructus)–Qianshi (Euryales Semen) Couplet Herbs on Membranous Nephropathy Based on Network Pharmacology." Chinese medicine and natural products 02, no. 03 (September 2022): e158-e168. http://dx.doi.org/10.1055/s-0042-1757458.
Full textWu, Xian-Jun, Xin-Bin Zhou, Chen Chen, and Wei Mao. "Systematic Investigation of Quercetin for Treating Cardiovascular Disease Based on Network Pharmacology." Combinatorial Chemistry & High Throughput Screening 22, no. 6 (September 5, 2019): 411–20. http://dx.doi.org/10.2174/1386207322666190717124507.
Full textPaley, Suzanne, Richard Billington, James Herson, Markus Krummenacker, and Peter D. Karp. "Pathway Tools Visualization of Organism-Scale Metabolic Networks." Metabolites 11, no. 2 (January 22, 2021): 64. http://dx.doi.org/10.3390/metabo11020064.
Full textDu, Bin, Daniel C. Zielinski, Jonathan M. Monk, and Bernhard O. Palsson. "Thermodynamic favorability and pathway yield as evolutionary tradeoffs in biosynthetic pathway choice." Proceedings of the National Academy of Sciences 115, no. 44 (October 11, 2018): 11339–44. http://dx.doi.org/10.1073/pnas.1805367115.
Full textXu, Bing, and Chunlei Zheng. "Analysis of Long Noncoding RNAs-Related Regulatory Mechanisms in Duchenne Muscular Dystrophy Using a Disease-Related lncRNA-mRNA Pathway Network." Genetics Research 2022 (December 14, 2022): 1–15. http://dx.doi.org/10.1155/2022/8548804.
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