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1

B, Sheehan Kathy, ed. Seen and unseen: Discovering the microbes of Yellowstone. Guilford, Conn: Falcon, 2005.

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2

Schaible, Ulrich E., and Haas Albert. Intracellular niches of microbes: A pathogens guide through the host cell. Weinheim: Wiley-VCH, 2009.

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1925-, Pimentel David, ed. Biological invasions: Economic and environmental costs of alien plant, animal, and microbe species. Boca Raton: CRC Press, 2002.

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4

Biological invasions: Economic and environmental costs of alien plant, animal, and microbe species. 2nd ed. Boca Raton, FL: CRC Press, 2011.

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5

Alien Species and Evolution: The Evolutionary Ecology of Exotic Plants, Animals, Microbes, and Interacting Native Species. Island Press, 2004.

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6

Alien Species and Evolution: The Evolutionary Ecology of Exotic Plants, Animals, Microbes, and Interacting Native Species. Island Press, 2004.

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7

Haas, Albert, and Ulrich E. Schaible. Intracellular Niches of Microbes: A Microbes Guide Through the Host Cell. Wiley & Sons, Incorporated, John, 2009.

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8

Intracellular Niches of Microbes: A Microbes Guide Through the Host Cell. Wiley-Interscience, 2009.

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9

Sheehan, Kathy B., Brett Leigh Dicks, Joan M. Henson, and David J. Patterson. Seen and Unseen: Discovering the Microbes of Yellowstone. Falcon, 2005.

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10

Kirchman, David L. Elements, biochemicals, and structures of microbes. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.003.0002.

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Microbiologists focus on the basic biochemical make-up of microbes, such as relative amounts of protein, RNA, and DNA in cells, while ecologists and biogeochemists use elemental ratios, most notably, the ratio of carbon to nitrogen (C:N), to explore biogeochemical processes and to connect up the carbon cycle with the cycle of other elements. Microbial ecologists make use of both types of data and approaches. This chapter combines both and reviews all things, from elements to macromolecular structures, that make up bacteria and other microbes. The most commonly used elemental ratio was discovered by Alfred Redfield who concluded that microbes have a huge impact on the chemistry of the oceans because of the similarity in nitrogen-to-phosphorus ratios for organisms and nitrate-to-phosphate ratios in the deep oceans. Although statistically different, the C:N ratios in soil microbes are remarkably similar to the ratios of aquatic microbes. The chapter moves on to discussing the macromolecular composition of bacteria and other microbes. This composition gives insights into the growth state of microbes in nature. Geochemists use specific compounds, “biomarkers”, to trace sources of organic material in ecosystems. The last section of the chapter is a review of extracellular polymers, pili, and flagella, which serve a variety of functions, from propelling microbes around to keeping them stuck in one place.
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11

Kirchman, David L. The physical-chemical environment of microbes. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.003.0003.

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Many physical-chemical properties affecting microbes are familiar to ecologists examining large organisms in our visible world. This chapter starts by reviewing the basics of these properties, such as the importance of water for microbes in soils and temperature in all environments. Another important property, pH, has direct effects on organisms and indirect effects via how hydrogen ions determine the chemical form of key molecules and compounds in nature. Oxygen content is also critical, as it is essential to the survival of all but a few eukaryotes. Light is used as an energy source by phototrophs, but it can have deleterious effects on microbes. In addition to these familiar factors, the small size of microbes sets limits on their physical world. Microbes are said to live in a “low Reynolds number environment”. When the Reynolds number is smaller than about one, viscous forces dominate over inertial forces. For a macroscopic organism like us, moving in a low Reynolds number environment would seem like swimming in molasses. Microbes in both aquatic and terrestrial habitats live in a low Reynolds number world, one of many similarities between the two environments at the microbial scale. Most notably, even soil microbes live in an aqueous world, albeit a thin film of water on soil particles. But the soil environment is much more heterogeneous than water, with profound consequences for biogeochemical processes and interactions among microbes. The chapter ends with a discussion of how the physical-chemical environment of microbes in biofilms is quite different from that of free-living organisms.
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12

Wilsey, Brian J. The Biology of Grasslands. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198744511.001.0001.

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This accessible text provides a concise but comprehensive introduction to the biology of global grasslands. Grasslands are vast in their extent, with native and non-native grasslands now covering approximately 50 percent of the global terrestrial environment. They are also of vital importance to humans, providing essential ecosystem services and some of the most important areas for the production of food and fibre worldwide. It has been estimated that 60 percent of calories consumed by humans originate from grasses, and most grain consumed is produced in areas that were formerly grasslands or wetlands. Grasslands are also important because they are used to raise forage for livestock, represent a source of biofuels, sequester vast amounts of carbon, provide urban green-space, and hold vast amounts of biodiversity. Intact grasslands contain an incredibly fascinating set of plants, animals, and microbes that have interested several generations of biologists, generating pivotal studies to important theoretical questions in ecology. As with other titles in the Biology of Habitats Series, the emphasis is on the organisms that dominate this environment although restoration, conservation, and experimental aspects are also considered. The Biology of Grasslands is suitable for both senior undergraduate and graduate students (in departments of biology, geography, and environmental science) taking courses in grassland ecology, plant ecology, and rangeland ecology as well as the many professional ecologists and conservation biologists requiring an authoritative overview of the topic.
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13

Kanti, Atit, Endang Sukara, Harmastini Sukiman, Puspita Lisdiyanti, Ruth Melliawati, Shanti Ratnakomala, Sylvia J. R. Lekatompessy, Trisanti Anindyawati, Yantyati Widyastuti, and Yopi Yopi. Exploring Indonesian Microbial Genetic Resources for Industrial Application. LIPI PRESS, 2016. http://dx.doi.org/10.14203/press.291.

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Indonesia is a mega biodiversity country consisting of various types of animals and plants, including genetic microbial resources. However, the exploration on microbes has not been yet extensively explored. This book highlights some important findings and achievements carried out by the microbiologists in LIPI on the sustainable use of Indonesian microbial genetic resources. Through this book, some successful processes of identification, characterization, and preservation in culture collections of Indonesian microbial genetic resources have been showed vividly. Some of potential microbes useful for human welfare are also described in this book, including their utilization for food, feed, health, and bioenergy. It is expected that this book can be a useful reference for those who are interested in the importance of microbial genetic resources for the prosperity of the nation as it revealed some significant findings on microbes, which have been isolated from various sources in Indonesia.
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14

Ching, Goh Hong, Jeyabalan Sangeetha, Devarajan Thangadurai, and Saher Islam. Biodiversity and Conservation: Characterization and Utilization of Plants, Microbes and Natural Resources for Sustainable Development and Ecosystem Management. Apple Academic Press, Incorporated, 2019.

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15

Robbins, Louise E. Louis Pasteur and the Hidden World of Microbes (Oxford Portraits in Science). Oxford University Press, USA, 2001.

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16

Morgan, Philip J., John R. McNeill, Matthew Mulcahy, and Stuart B. Schwartz. Sea and Land. Oxford University PressNew York, 2022. http://dx.doi.org/10.1093/oso/9780197555446.001.0001.

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Abstract Sea and Land provides an in-depth environmental history of the Caribbean to ca. 1850, comprising a close examination of some of the central forces and characteristics that defined the region, with a coda that takes the story into the modern era. It explores the mixing, movement, and displacement of peoples and the parallel ecological mixing of animals, plants, microbes from Africa, Europe, elsewhere in the Americas, and indeed Asia. It examines first the arrival of Native American to the region and the environmental transformations that followed. It then turns to the even more dramatic changes that accompanied the arrival of Europeans and Africans in the fifteenth century. Throughout it argues that the constant arrival, dispersal, and mingling of new plants and animals gave rise to a creole ecology. Particular attention is given to the emergence of black slavery, sugarcane, and the plantation system, an unholy trinity that thoroughly transformed the region’s demographic and physical landscapes and made the Caribbean a vital site in the creation of the modern western world. This volume integrates research concerning natural resources, conservation, epidemiology, and climate in a new general environmental history of the region. It makes environmental perspectives more accessible and more indispensable, to scholars and students alike, to foster both a fuller appreciation of the extent to which environmental factors shaped historical developments in the Caribbean and the extent to which human actions have transformed the biophysical environment of the region over time.
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17

Gillings, Mark. Plant Microbiology. BIOS Scientific Publ, 2004.

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18

Earle, Rebecca. The Columbian Exchange. Edited by Jeffrey M. Pilcher. Oxford University Press, 2012. http://dx.doi.org/10.1093/oxfordhb/9780199729937.013.0019.

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The Columbian Exchange refers to the flow of plants, animals and microbes across the Atlantic Ocean and beyond. Coined in 1972 by the historian Alfred Crosby, the Columbian Exchange set in motion Christopher Columbus' historic voyage to the Americas in 1492. Crosby used the term "Columbian Exchange" to describe the process of biological diffusion that arose following Europe's colonization of the Americas. Crosby's The Columbian Exchange: Biological and Cultural Consequences of 1492 chronicled the wide-ranging consequences of the transfer of diseases, plants and animals that ensued after 1492. The book, essentially consisting of a series of interlocking essays, documented the impact of Old World plants and animals on the Americas, the global dissemination of New World foods, and how European colonization resulted in the transmission of pathogens. Crosby made forceful arguments to support his claim that the most significant consequences of European colonization of the new world were biological in nature.
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19

Barraclough, Timothy G. The Evolutionary Biology of Species. Oxford University Press, 2019. http://dx.doi.org/10.1093/oso/9780198749745.001.0001.

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‘Species’ are central to understanding the origin and dynamics of biological diversity; explaining why lineages split into multiple distinct species is one of the main goals of evolutionary biology. However, the existence of species is often taken for granted, and precisely what is meant by species and whether they really exist as a pattern of nature has rarely been modelled or critically tested. This novel book presents a synthetic overview of the evolutionary biology of species, describing what species are, how they form, the consequences of species boundaries and diversity for evolution, and patterns of species accumulation over time. The central thesis is that species represent more than just a unit of taxonomy; they are a model of how diversity is structured as well as how groups of related organisms evolve. The author adopts an intentionally broad approach to consider what species constitute, both theoretically and empirically, and how we detect them, drawing on a wealth of examples from microbes to multicellular organisms.
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20

Levy, Sharon. The Marsh Builders. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780190246402.001.0001.

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Swamps and marshes once covered vast stretches of the North American landscape. The destruction of these habitats, long seen as wastelands that harbored deadly disease, accelerated in the twentieth century. Today, the majority of the original wetlands in the US have vanished, transformed into farm fields or buried under city streets. In The Marsh Builders, Sharon Levy delves into the intertwined histories of wetlands loss and water pollution. The book's springboard is the tale of a years-long citizen uprising in Humboldt County, California, which led to the creation of one of the first U.S. wetlands designed to treat city sewage. The book explores the global roots of this local story: the cholera epidemics that plagued nineteenth-century Europe; the researchers who invented modern sewage treatment after bumbling across the insight that microbes break down pollutants in water; the discovery that wetlands act as efficient filters for the pollutants unleashed by modern humanity. More than forty years after the passage of the Clean Water Act launched a nation-wide effort to rescue lakes, rivers and estuaries fouled with human and industrial waste, the need for revived wetlands is more urgent than ever. Waters from Lake Erie and Chesapeake Bay to China's Lake Taihu are tainted with an overload of nutrients carried in runoff from farms and cities, creating underwater dead zones and triggering algal blooms that release toxins into drinking water sources used by millions of people. As the planet warms, scientists are beginning to design wetlands that can shield coastal cities from rising seas. Revived wetlands hold great promise for healing the world's waters.
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21

Kirchman, David L. The ecology of viruses. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.003.0010.

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In addition to grazing, another form of top-down control of microbes is lysis by viruses. Every organism in the biosphere is probably infected by at least one virus, but the most common viruses are thought to be those that infect bacteria. Viruses come in many varieties, but the simplest is a form of nucleic acid wrapped in a protein coat. The form of nucleic acid can be virtually any type of RNA or DNA, single or double stranded. Few viruses in nature can be identified by traditional methods because their hosts cannot be grown in the laboratory. Direct count methods have found that viruses are very abundant, being about ten-fold more abundant than bacteria, but the ratio of viruses to bacteria varies greatly. Viruses are thought to account for about 50% of bacterial mortality but the percentage varies from zero to 100%, depending on the environment and time. In addition to viruses of bacteria and cyanobacteria, microbial ecologists have examined viruses of algae and the possibility that viral lysis ends phytoplankton blooms. Viruses infecting fungi do not appear to lyse their host and are transmitted from one fungus to another without being released into the external environment. While viral lysis and grazing are both top-down controls on microbial growth, they differ in several crucial respects. Unlike grazers, which often completely oxidize prey organic material to carbon dioxide and inorganic nutrients, viral lysis releases the organic material from hosts more or less without modification. Perhaps even more important, viruses may facilitate the exchange of genetic material from one host to another. Metagenomic approaches have been used to explore viral diversity and the dynamics of virus communities in natural environments.
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22

Brisou, Jean F. Biofilms: Methods for Enzymatic Release of Microorganisms. Taylor & Francis Group, 2017.

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23

Brisou, Jean F. Biofilms: Methods for Enzymatic Release of Microorganisms. Taylor & Francis Group, 2017.

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24

Brisou, Jean F. Biofilms: Methods for Enzymatic Release of Microorganisms. CRC-Press, 1995.

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25

Brisou, Jean F. Biofilms: Methods for Enzymatic Release of Microorganisms. Taylor & Francis Group, 2017.

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26

Brisou, Jean F. Biofilms: Methods for Enzymatic Release of Microorganisms. Taylor & Francis Group, 2017.

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27

Biofilms: Methods for Enzymatic Release of Microorganisms. Taylor & Francis Group, 2017.

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