Dissertations / Theses on the topic 'Molecular receptors'
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Björnström, Linda. "Molecular mechanisms of alternative estrogen receptor signaling /." Stockholm, 2003. http://diss.kib.ki.se/2003/91-7349-509-3/.
Full textKovoor, Abraham. "Molecular regulation of opioid receptors /." Thesis, Connect to this title online; UW restricted, 1998. http://hdl.handle.net/1773/6278.
Full textMeira, Guilherme Louzada Silva. "Analíse da expressão do receptor olfativo M93 em sistemas heterólogos." Universidade de São Paulo, 2004. http://www.teses.usp.br/teses/disponiveis/46/46131/tde-31082016-115408/.
Full textThe mammalian olfactory system can discrim inate thousands of odorants present in the environrnent. Approximately 1000 different olfactory receptors (ORs) are expressed in the olfactory epithelium (OE) of the nose. The ORs detect odorants and transmit the resulting signals to the olfactory bulb (OB) of the brain. ORs belong to the G-protein-coupled receptor (GPCR) super family and have seven putative transmembrane domains. For unknown reasons, the ORs are retained in the endoplasmatic reticulum when expressed in heterologous mammalian cell lines. Probably accessory proteins are required for the sorting of the ORs to the cell surface. In the present work, we used the OR M93 to study the mechanisms of OR expression. Our goals were to (1) construct an expression vector for OR M93 in fusion with GFP in yeast and (2) to identify proteins expressed in the mouse OE that interact with ORs. The analysis by fluorescence microscopy suggested that OR M93 in fusion with GFP was retained in the endoplasmic reticulum (ER) of yeast. We used the yeast two-hybrid system to screen a mouse OE cDNA library with a bait corresponding to the N-terminal region ofthe üR M93. Four potential candidates were identified: HLA-B associated transcript 3 (BAT-3/Scythe), transmembrane 4 superfamily (CD82 member), transmembrane 4 superfamily (TSPN-3 member) and syndecan (SDC2). In situ hybridization analysis suggests that OAP-l protein represents the best candidate for interaction with OR M93. We suggest the OAP-l protein could be an accessory protein required for the sorting of the ORs to the cell surface in heterologous cell lines.
McGinley, Paula Lynn. "Molecular complementation of mutant hormone receptors." Access to citation, abstract and download form provided by ProQuest Information and Learning Company; downloadable PDF file, 189 p, 2008. http://proquest.umi.com/pqdweb?did=1456289611&sid=5&Fmt=2&clientId=8331&RQT=309&VName=PQD.
Full textKuswandi, Susi Iravati. "Molecular genetic analysis of aerobactin receptors." Thesis, University of Leicester, 1996. http://hdl.handle.net/2381/34438.
Full textBeltrán, Sáez Elisa. "Information transmission through a nonlinear molecular signaling system: ErbB as a case study." Doctoral thesis, Universitat Autònoma de Barcelona, 2019. http://hdl.handle.net/10803/667354.
Full textThe ability of organisms to extract and store information from their surroundings marked a revolution in the history of life and allowed survival and adaptation to the environment. Cells, from prokaryots to eukaryots, use specific receptors inserted in their membranes to detect extracellular molecules that cannot cross into the cell, where cell decisions are taken. Hence, those membrane receptors represent an information channel through which the environmental information can affect cell behavior and adaptation. In this Thesis, we modeled information transmission through the ErbB system, a family of receptors involved in many different cellular behaviors, such as cell proliferation or migration. Thanks to the study of complex diseases - let us think of cancer – from a molecular perspective, the ErbB receptors have been identified as factors causing the disease: when they are overexpressed (produced in excess), cells cease to interpret correctly extracellular information, which results in uncontrolled cell proliferation forming tumors. Therefore, dysregulation of ErbB receptors is at the core of what can be called information diseases, that is, diseases that arise from the loss of the capacity to obtain and interpret extracellular information. With the aim of quantifying the information transmitted through the ErbB system, we modeled the dynamics of membrane receptors by means of systems of ordinary differential equations. Our models considers the dimerization (formation of pairs of receptors) between receptors of differet types. This interaction is necessary for receptor activation and introduces a nonlinearity in the system. Dimerization and activation are the first steps in the signaling cascade, followed by the interaction of intracellular proteins with the active receptors. We modeled these interactions by means of stochastic models (Poisson processes). Thanks to the modeling of these two processes (receptor dynamics and interactions with the intracellular proteins), we obtained an estimation of the intracellular stat in probabilistic terms which has allowed us to use tools from information theory to quantify information transmission between the exterior and the interior of the cell. Our results show a decrease in the information transmitted through the ErbB channel as the amount of ErbB receptors at the membrane increases. We considered different dynamics of the receptors and showed that the loss of information depends on the dynamics of interaction between the receptors, as well as on their interactions with the intracellular signaling machinery. In particular, we studied the interaction of active receptors with several signaling intracellular proteins and showed that the observed tendency of proteins to bind several binding sites with similar affinities translates into an increased synergy between the signaling proteins. All in all, quantifying and analysing these interactions results in a better understanding of the dynamics and information transmission through ErbB and similar molecular systems and it can be used for the design of therapeutic strategies for information diseases.
Zhang, Gaiping. "Bovine IgG Fc receptors." Thesis, University of Hertfordshire, 1994. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.387187.
Full textTorvinen, Maria. "Adenosine receptor/dopamine receptor interactions : molecular and biochemical aspects /." Stockholm, 2002. http://diss.kib.ki.se/2002/91-7349-298-1/.
Full textCordomí, Montoya Arnau. "Molecular dynamics simulations of seven-transmembrane receptors." Doctoral thesis, Universitat Politècnica de Catalunya, 2008. http://hdl.handle.net/10803/6464.
Full textThe current limitations in the experimental techniques necessary for microscopic studies of the membrane as well as membrane proteins emerged the use of computational methods and specifically molecular dynamics simulations. The lead motif of this thesis is the study of GPCR by means of this technique, with the ultimate goal of developing a methodology that can be generalized to the study of most 7-TM as well as other membrane proteins. Since the bovine rhodopsin was the only protein of the GPCR family with a known threedimensional structure at an atomic level until very recently, most of the effort is centered in the study of this receptor as a model of GPCR.
The scope of this thesis is twofold. On the one hand it addresses the study of the simulation conditions, including the procedure as well as the sampling box to get optimal results, and on the other, the biological implications of the structural and dynamical behavior observed in the simulations. Specifically, regarding the methodological aspects of the work, the bovine rhodopsin has been studied using different treatments of long-range electrostatic interactions and sampling conditions, as well as the effect of sampling the protein embedded in different one-component lipid bilayers. The binding of ions to lipid bilayers in the absence of the protein has also been investigated.
Regarding the biological consequences of the analysis of the MD trajectories, it has been carefully addressed the binding site of retinal and its implications in the process of isomerization after photon uptake, the alteration a group of residues constituting the so-called electrostatic lock between helices TM3 and TM6 in rhodopsin putatively used as common activation mechanism of GPCR, and the structural effects caused by the dimerization based on a recent semi-empirical model. Finally, the specific binding of ions to bacteriorhodopsin has also been studied.
The main conclusion of this thesis is provide support to molecular dynamics as technique capable to provide structural and dynamical informational about membranes and membrane proteins, not currently accessible from experimental methods). Moreover, the use of an explicit lipidic environment is crucial for the study the membrane protein dynamics as well as for the protein-protein and lipidprotein interactions.
Hodyl, Jozef Andrew Zbigniew, and jozef hodyl@flinders edu au. "Silica Immobilised Metal Ion Activated Molecular Receptors." Flinders University. School of Chemistry, Physics and Earth Sciences, 2008. http://catalogue.flinders.edu.au./local/adt/public/adt-SFU20090301.162335.
Full textKasorn, Anongnard. "The molecular pharmacology of lysophosphatidic acid receptors." Thesis, University of Nottingham, 2006. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.441003.
Full textRocheville, Magalie. "Oligomerization of somatostatin receptors." Thesis, McGill University, 2002. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=84425.
Full textNilsson, Isabelle. "The cholecystokinin receptor family : molecular cloning and pharmacological characterization /." Linköping : Univ, 2003. http://www.bibl.liu.se/liupubl/disp/disp2003/med791s.pdf.
Full textJosephson, Anna. "Spinal cord injury: mechanical and molecular aspects /." Stockholm, 2002. http://diss.kib.ki.se/2002/91-7349-235-3/.
Full textSlessareva, Janna Eugenievna. "Molecular mechanisms of G protein-receptor coupling." Morgantown, W. Va. : [West Virginia University Libraries], 2003. http://etd.wvu.edu/templates/showETD.cfm?recnum=2907.
Full textTitle from document title page. Document formatted into pages; contains vi, 200 p. : ill. (some col.). Vita. Includes abstract. Includes bibliographical references.
Ma, Hongzheng. "Molecular mechanisms of G protein-receptor coupling." Morgantown, W. Va. : [West Virginia University Libraries], 2003. http://etd.wvu.edu/templates/showETD.cfm?recnum=2978.
Full textTitle from document title page. Document formatted into pages; contains viii, 264 p. : ill. (some col.). Vita. Includes abstract. Includes bibliographical references.
Nawaz, Zafar. "Molecular Mechanism of Action of Steroid Hormone Receptors." Thesis, University of North Texas, 1992. https://digital.library.unt.edu/ark:/67531/metadc798398/.
Full textTremblay, Annie. "Transcriptional regulation by the estrogen-related receptors." Thesis, McGill University, 2010. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=86701.
Full textERRα is highly expressed in the kidney, but its role in this organ is unknown. Therefore, we used a combination of physiological studies, gene expression and genome-wide location analysis to explore the role of ERRα in the kidney. A defect in sodium and potassium homeostasis was observed in the ERRα null mice, which correlated with the ERRα renal transcriptional program comprising key sodium and potassium channels. Furthermore, telemetry monitoring revealed that the ERRα null mice display a significantly reduced blood pressure at nighttime and this correlated the renal transcriptional program of ERRα comprising genes involved in blood pressure regulation. In addition, we identified the Renin-Angiotensin pathway genes as direct ERRα target genes in the kidney. These results identify a role for ERRα in renal sodium/potassium handling, intra-renal renin-angiotensin pathway, blood pressure regulation and possibly hypertension.
Les récepteurs reliés aux récepteurs de l'estrogène (ERRs) sont ubiquitaires et constitutivement actifs et le rôle joué par les modifications post-traductionnelles sur leur activité transcriptonnelle est peu connu. Nous avons démontré qu'un motif consensus de sumoylation phospho-dependente (PDSM) situé dans le domaine N-terminal diminue l'activité transcriptionnelle des ERRs sur des promoteurs à élements de réponses multiples grâce à un mécanisme de contrôle de la synergie. Nous avons aussi établi que les ERRs intéragissent avec la E3-SUMO-ligase PIASy et que cette dernière promouvoit la sumoylation du ERRα de manière phospho-dépendante. De plus, en montrant que la forme sumoylée endogène de ERRα dans de l'extrait de foie de souris n'était détectable qu'avec un anticorps spécifique dirigé contre la sérine 19 phoshorylée nous avons confirmé la validité de l'interrelation phosphorylation-sumoylation dans un contexte physiologique in vivo.
Même si le haut niveau d'expression de ERRα dans les reins est reconnu, son rôle dans cet organe est inconnu. Nous avons donc utilisé une approche combinatoire d'analyses physiologiques, d'expression génique et d'identification de sites spécifiques de liaison à l'ADN au niveau génomique afin d'explorer plus avant le rôle physiologique de ERRα dans le rein. Nous avons observé que les souris knock-out pour le gène de ERRα présentent un problème au niveau de l'homéostasie sodique et potassique corrèlant directement avec le programme transcriptionnel rénal qui comprends plusieurs canaux sodiques et potassiques importants. De plus, la mesure des paramètres cardiovasculaires par télémétrie a révélé que les souris knock-out pour le gène du ERRα ont une pression sanguine nocturne plus faible qui corrèle avec le programme transcriptionnel comprenant plusieurs gènes influençant la pression sanguine. Nous avons aussi identifié les promoteurs de certains gènes composant le système rénine-angiotensine comme gènes cibles potentiels de ERRα dans les reins. Nos résultats suggèrent une implication du ERRα dans le contrôle de la pression sanguine basale et possiblement dans l'hypertension.
Trupp, Miles. "Neurotrophic signalling by GDNF and its receptors /." Stockholm, 1998. http://diss.kib.ki.se/search/diss.se.cfm?19980602trup.
Full textFutch, Tracy Ann. "Extracellular matrix protein receptors in Drosophila melanogaster." Diss., The University of Arizona, 2004. http://hdl.handle.net/10150/280545.
Full textTam, Kal-van, and 譚珈詠. "Molecular evolution of secretin/glucagon receptor superfamily in osteichthyans." Thesis, The University of Hong Kong (Pokfulam, Hong Kong), 2010. http://hub.hku.hk/bib/B45693092.
Full textTalvik, Mirjam. "Clinical molecular imaging of schizophrenia /." Stockholm, 2003. http://diss.kib.ki.se/2003/91-7349-587-5/.
Full textMarcu, Jahan Phillip. "Novel Insights into CB1 Receptor Signaling and the Anabolic Role of Cannabinoid Receptors in Bone." Diss., Temple University Libraries, 2013. http://cdm16002.contentdm.oclc.org/cdm/ref/collection/p245801coll10/id/233543.
Full textPh.D.
Activation of the CB1 receptor is modulated by aspartate residue D2.63176 in transmembrane helix (TMH) II. Interestingly, D2.63 does not affect the affinity for ligand binding at the CB1 receptor. Studies in class A GPCRs have suggested an ionic interaction between residues of TMHII and VII. In this report, modeling studies identified residue K373, in the extracellular (EC)-3 loop, in charged interactions with D2.63. We investigated this possibility by performing reciprocal mutations and biochemical studies. D2.63176A, K373A, D2.63176A-K373A, and the reciprocal mutant with the interacting residues juxtaposed, D2.63176K-K373D were characterized using radioligand binding and guanosine 5'-3-O-(thio)triphosphate functional assays. None of the mutations resulted in a significant change in the binding affinity of CP55,940 or SR141716A. Computational results indicate that the D2.63176-K373 ionic interaction strongly influences the conformation(s) of the EC-3 loop, providing a structure-based rationale for the importance of the EC-3 loop to signal transduction in CB1. Specifically, the putative ionic interaction results in the EC-3 loop pulling over the top (extracellular side) of the receptor; this EC-3 loop conformation may serve protective and mechanistic roles. These results suggest that the ionic interaction between D2.63176 and K373 is crucial for CB1 signal transduction. This work may help to aide drug design efforts for the effective treatment of different diseases. The cannabinoid receptors of osteoblasts may represent a target for the treatment of bone disorders such as osteoporosis. Our research demonstrates that cannabinoids can affect important signaling molecules in osteoblasts. In MC3T3-E1 osteoblastic cells, the CB1 antagonist, AM251, has been reported to induce increases in Runx2 mRNA, mineralized bone nodule formation, and activation of signaling molecules such as ERK and AKT (Wu et al., 2011). Studies from our lab characterizing mice in which both CB1 and CB2 receptors were inactivated by homologous recombination have demonstrated increased bone mass coupled with enhanced osteoblast differentiation of bone marrow stromal cells in culture (manuscript in preparation). We explored the effect of antagonizing CB1 and CB2 cannabinoid receptors in osteoblastic cells to gain insights into molecular pathways that may help to explain the effects of the endocannabinoid system (ECS) in bone development. Our data was generated by running time course experiments with MC3T3-E1 cells under the influence of SR141716A, SR144528 or both in combination. The cells were harvested with a lysis buffer at specific time points and analyzed by western blot analysis. Quantification of protein activation was calculated using LiCor imaging equipment and software. Within 15 minutes, treatment with the CB1 receptor antagonist SR141716A resulted in several fold increases in pERK, pSMAD158, and pAKT. SR144528, a CB2 receptor antagonist, caused increases in pERK and pSMAD158, but not pAKT. When both antagonists were applied together, pERK and pSMAD158 levels increased, while pAKT signaling was diminished compared to SR141716A alone. The finding that cannabinoid receptor antagonists alter the activity of the SMAD158 complex is a novel finding, which suggests that cannabinoids can influence bone morphogenic signaling pathways, and therefore play a significant role in osteoblast differentiation and function.
Temple University--Theses
Carlsson, Peter. "Nuclear receptors studied by molecular dynamics computer simulations /." Stockholm, 2004. http://diss.kib.ki.se/2004/91-7349-823-8.
Full textSalaneck, Erik. "Molecular Evolution of Neuropeptide Y Receptors in Vertebrates." Doctoral thesis, Uppsala : Acta Universitatis Upsaliensis : Univ.-bibl. [distributör], 2001. http://publications.uu.se/theses/91-554-4988-3/.
Full textKwok, Ho-yan Amy, and 郭可茵. "Molecular cloning and characterization of chicken prostaglandin receptors." Thesis, The University of Hong Kong (Pokfulam, Hong Kong), 2008. http://hub.hku.hk/bib/B41508336.
Full textKwok, Ho-yan Amy. "Molecular cloning and characterization of chicken prostaglandin receptors." Click to view the E-thesis via HKUTO, 2008. http://sunzi.lib.hku.hk/hkuto/record/B41508336.
Full textGupta, Srishti. "Molecular analysis of Bacillus megaterium spore germinant receptors." Thesis, University of Cambridge, 2014. https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.708193.
Full textCollins, T. "Molecular pharmacological characterisation of neuronal nicotinic acetylcholine receptors." Thesis, University College London (University of London), 2010. http://discovery.ucl.ac.uk/624494/.
Full textTakase, Masayoshi. "Molecular Recognition Abilities of Ferrocene-Modified Multitopic Receptors." 京都大学 (Kyoto University), 2003. http://hdl.handle.net/2433/149097.
Full textBarkhem, Tomas. "Molecular mechanisms of estrogen and antiestrogen action /." Stockholm, 2002. http://diss.kib.ki.se/2002/91-7349-359-7/.
Full text馬智謙 and Chi-him Eddie Ma. "Molecular studies of gonadotropin releasing hormone receptors and estrogen receptors in goldfish (Carassius auratus)." Thesis, The University of Hong Kong (Pokfulam, Hong Kong), 2000. http://hub.hku.hk/bib/B4257531X.
Full textMa, Chi-him Eddie. "Molecular studies of gonadotropin releasing hormone receptors and estrogen receptors in goldfish (Carassius auratus)." Click to view the E-thesis via HKUTO, 2000. http://sunzi.lib.hku.hk/hkuto/record/B4257531X.
Full textLau, Suk-ling Joanna, and 劉淑玲. "Molecular characterization of the chicken growth hormone receptorgene." Thesis, The University of Hong Kong (Pokfulam, Hong Kong), 2005. http://hub.hku.hk/bib/B45015430.
Full textNakahara, Thiago Seike 1989. "Caracterização molecular e funcional de receptores da classe OR expressos no órgão vomeronasal de mamíferos." [s.n.], 2014. http://repositorio.unicamp.br/jspui/handle/REPOSIP/316387.
Full textTexto em português e inglês
Dissertação (mestrado) - Universidade Estadual de Campinas, Instituto de Biologia
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Resumo: O Sistema Olfativo é um Sistema Sensorial complexo, composto por diversos subsistemas cuja integração no cérebro resulta na interação entre os animais e seus respectivos ambientes de maneira adequada. Essa adequação pode significar respostas comportamentais e fisiológicas distintas para situações diversas a que esses animais tenham sido expostos. Esse Sistema exibe compartimentos especializados na detecção de estímulos de uma mesma natureza e nesse contexto, o Sistema Olfativo Principal é responsável pela detecção de odorantes voláteis em geral e o Sistema Olfativo Acessório é responsável pela detecção de feromônios. Apesar dessa divisão formal, estudos recentes questionam essa divisão e propõem sobreposição entre a função desses subsistemas. Nesse estudo investigamos a expressão de receptores OR sendo expressos no Órgão Vomerosasal em níveis comparáveis aos receptores V2R ("endógenos"). Desses receptores, isolamos o receptor Olfr692 que possui o nível de expressão mais alto entre os OR estudados ou relatados anteriormente na literatura. As células que expressam o receptor Olfr692 foram caracterizadas molecularmente e foram feitos estudos preliminares a fim de investigar a função do receptor Olfr692 frente a possíveis funções biológicas que fossem capazes de explicar a expressão robusta de um receptor de classe OR no Órgão Vomeronasal
Abstract: The Olfactory System is a complex Sensorial System, comprised of some subsystems whose integration in the brain results in the appropriated interaction between animals and their environment, that is, proper behavioral or physiological answers to diverse situations to which these animals are exposed. This System exhibits specialized features for detection of a given kind of stimuli. The Main Olfactory System detects volatile odorants in general while the Accessory Olfactory System detects pheromones. Apart from this formal distinction, recent studies have questioned this division and propose some overlap between them. In the present study, we have investigated the expression of OR receptors in the Vomeronasal Organ whose expression level is compared to V2R Receptors (endogenous). We have isolated from these genes the Olfr692, which has the higher levels among the VNO-OR here studied and those discussed in the literature. These cells have been molecularly characterized and preliminary functional studies were also performed, searching for the possible biological functions of this Receptor, which could explain its expression in the Vomeronasal Organ
Mestrado
Genetica Animal e Evolução
Mestre em Genética e Biologia Molecular
Andersson, Monika. "Thyroid hormones and their receptors in transcriptional regulation /." Stockholm, 1997. http://diss.kib.ki.se/1997/91-628-2744-8.
Full textRyan, Tomás John. "Functional investigation of NMDA receptor molecular evolution." Thesis, University of Cambridge, 2010. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.608544.
Full textSilveira, Rodrigo Leandro 1986. "Simulações de dinâmica molecular do receptor ativado de proliferadores de peroxissomos isoforma y." [s.n.], 2010. http://repositorio.unicamp.br/jspui/handle/REPOSIP/248857.
Full textDissertação (mestrado) - Universidade Estadual de Campinas, Instituto de Química
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Resumo: O Receptor Ativado de Proliferadores de Peroxissomos Isoforma g (PPARg ) é uma proteína pertencente à superfamília dos Receptores Nucleares. Através da ligação de pequenas moléculas, o PPARg controla a transcrição de genes ligados à diferenciação de adipócitos e ao metabolismo de glicose e de lipídeos. O PPARg tem uma enorme cavidade de ligação que permite a ligação de várias moléculas estruturalmente distintas que geram respostas fisiológicas também distintas. O PPARg é o receptor de uma classe de drogas antidiabéticas cujo principal representante é a rosiglitazona. Além disso, diversos ligantes naturais ativam o receptor e, recentemente, foi descoberto que ácidos graxos de cadeia média podem se ligar e ativar o PPARg . A estrutura cristalográfica do PPARg na presença de ácido nonanóico mostrou que havia 3 ligantes simultaneamente ligados ao receptor. Neste trabalho, utilizamos simulações de dinâmica molecular para investigar a dinâmica do PPARg ligado à rosiglitazona e aos ácidos nonanóico, cáprico e láurico. Observamos que a rosiglitazona não ocupa todo o sítio de ligação, havendo uma complementaridade entre o ligante e o receptor na base do domínio de ligação. Os ácidos graxos, por outro lado, ocupam quase 100% da cavidade de ligação. Vimos que moléculas de água dentro do sítio são essenciais para a ligação dos ácidos graxos. A capacidade de ativação dos diferentes áacidos graxos foi correlacionada à capacidade dos mesmos manter ligação de hidrogênio com o resíduo Y473, localizado na hélice 12, a qual deve ser estabilizada para ativar o receptor. Além disso, simulações de complexos formados pela ligação simultânea da rosiglitazona e de um ácido nonanóico sugeriram que o receptor pode comportar diferentes ligantes simultaneamente. Por m, utilizamos uma técnica especial de dinâmica molecular para investigar as possíveis rotas de dissociação dos ácidos graxos do receptor. Observamos que existe um caminho preferencial para a dissociação dos ligantes e que as principais flutuações estruturais da proteína envolvidas no processo ocorrem na hélice 3 do PPARg
Abstract: The Peroxisome Proliferator-Activated Receptor Isoform (PPAR ) is a protein belonging to the Nuclear Receptors superfamily. PPAR controls the transcription of genes related to adipocyte di erentiation and lipid and glucose metabolism. PPAR has a large ligand-binding pocket that allows the binding of many molecules with uncorrelated structure that generate distinct physiologic responses. PPAR is the receptor of a class of antidiabetic drugs whose the main representant is rosiglitazone. Moreover, several natural ligands activate the receptor and, recently, it was discovered that medium chain fatty acids can bind and activate PPAR . The crystallographic structure of the complex formed by PPAR and nonanoic acid showed 3 ligands simultaneously binded to the receptor. In this work, we performed molecular dynamics simulations to investigate the dynamics of PPAR in the presence of rosiglitazone and nonanoic, capric and lauric acids. We observed that rosiglitazone does not occupy the whole binding pocket and there is a complementarity between ligand and receptor. The fatty acids, on the other hand, occupy almost 100% of the binding pocket. We saw that some water molecules within the binding pocket are essential to the binding of the fatty acids. The activation capacity of the di erent fatty acids were correlated to the capacity to keep hydrogen bond with the residue Y473 of helix 12, which must be stabilized in order to activate the transcription. Furthermore, some simulations of the complex formed by simultaneus binding of rosiglitazone and nonanoic acid suggested that the receptor can bear di erent ligands simultaneously. Finally, we used a special technique of molecular dynamics to investigate the possible dissociation paths of the nonanoic acids from the receptor. The simulations suggest that there is a preferential path to the dissociation of the ligands and the main structural uctuations involved in the process take place in the helix 3 of the receptor
Mestrado
Físico-Química
Mestre em Química
Im, Jin Seon. "Molecular characterization of T cell receptors and non-MHC restricted T cell receptor binding peptides." Diss., The University of Arizona, 1999. http://hdl.handle.net/10150/284969.
Full textChung, Ming-kar Karl, and 鍾銘家. "Molecular characterization of chicken glutamate receptor, metabotropic1 (GRM 1)." Thesis, The University of Hong Kong (Pokfulam, Hong Kong), 2012. http://hub.hku.hk/bib/B49617941.
Full textpublished_or_final_version
Biological Sciences
Master
Master of Philosophy
Aust, Jonathan Gavin. "Molecular and physiological investigations of fish renin-angiotensin systems." Thesis, University of Exeter, 2002. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.248168.
Full textChen, Changfeng. "Retinoic acid receptors and mouse epidermal tumorigenesis and development." Thesis, McGill University, 2003. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=84492.
Full textProgressive loss of RARs is associated with skin carcinogenesis both in human and animals. Despite such observations, the biological significance of RAR loss in skin carcinogenesis has not yet been clarified. To this end, we established keratinocyte cell lines deficient in RARalpha, RARgamma, or both and employed a well-established tumorigenesis model to investigate whether loss of RARs is causally related to skin tumorigenesis. We found that RARgamma is the major RAR subtype mediating the growth and AP-1 inhibitory effects of RA on keratinocytes in vitro. Consistent with this observation, loss of RARgamma, but not RARalpha, predisposed keratinocytes to tumor formation, suggesting that RARgamma may act as a tumor suppressor. Reconstitution of RARs in the RARalphagamma-/- keratinocytes inhibited their tumorigenic potential, further proving that RARs have tumor suppressive effects.
As expected, expression of dnRARalpha resulted in profound epidermal defects. Intriguingly, dnRAalphaDBD caused a virtually identical skin phenotype, suggesting that dnRARalpha acts to affect epidermal development via a DNA-binding-independent mechanism. The epidermal phenotype of these transgenic mice is reminiscent of that seen in the p63-/- mice, and p63 expression was indeed significantly reduced in the epidermis expressing dnRARalpha or dnRARalphaDBD, suggesting that downregulation of p63 by dnRARalpha may be attributable to the epidermal phenotypes associated with the transgenic mice. These observations also suggest that DNA-binding is not required for dnRARalpha to attenuate p63 expression in the epidermis. Consistent with these observations, I also found that p63 is indeed not a RAR-target, as no overt changes in p63 expression were observed in the RARalphagamma-/- epidermis, which appeared normal. (Abstract shortened by UMI.)
Lundström, Linda. "Subtype selective activation and molecular characterization of galanin receptors." Doctoral thesis, Stockholms universitet, Institutionen för neurokemi, 2007. http://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-1344.
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