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Journal articles on the topic 'Molecular phylogeny'

To see the other types of publications on this topic, follow the link: Molecular phylogeny.

Author: Grafiati

Published: 4 June 2021

Last updated: 14 March 2023

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1

Sidow, Arend, and Barbara H. Bowman. "Molecular phylogeny." Current Opinion in Genetics & Development 1, no. 4 (December 1991): 451–56. http://dx.doi.org/10.1016/s0959-437x(05)80191-1.

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2

Sidow, Arend, and Barbara H. Bowman. "Molecular phylogeny." Current Biology 2, no. 1 (January 1992): 33. http://dx.doi.org/10.1016/0960-9822(92)90422-7.

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3

Oborník, M., R. Stouthamer, E. Meekes, and M. Schilthuittzen. "Molecular characterization and phylogeny of the entomopathogenic fungus." Plant Protection Science 35, No. 1 (January 1, 1999): 1–9. http://dx.doi.org/10.17221/9664-pps.

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We characterized 23 isolates of the entomopathogenic fungus Aschersonia spp. from Mexico, Brazil, Guyana, Trinidad, Venezuela, Columbia, Florida, Malaysia, Thailand, Japan, Philippines, Java and South India using RAPD markers. The data were used to compute the genetic variability and to reconstruct the phylogeny of the genus Aschersonia. Relative genetic distances varied from 0.018 (between isolates Aa2 and Ap2) to 0.445 (between isolates A1 and At1). In the constructed phylogenetic tree, isolates were clustered according to their geographical origin. We determined partial 26S ribosomal DNA sequences of five Aschersonia isolates (A28, A31, Ai1a, Ai2b – Aschersonia spp.; and Ap1– Aschersonia placenta) and used them for phylogenetic analysis. Three of the tested isolates were not distinguishable. The tree constructed indicated that isolates Ai1a and Ai2b belong to species distinct from A. placenta and A. aleyrodis.

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4

Câmara, Marcos P. S., Mary E. Palm, Peter van Berkum, and Nichole R. O'Neill. "Molecular phylogeny ofLeptosphaeriaandPhaeosphaeria." Mycologia 94, no. 4 (July 2002): 630–40. http://dx.doi.org/10.1080/15572536.2003.11833191.

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5

Maltsev, Y., S. Andreeva, M. Kulikovskiy, J. Podunaj, and J. P. Kociolek. "Molecular phylogeny of the diatom genus Envekadea (Bacillariophyceae, Naviculales)." Nova Hedwigia, Beihefte 146 (January 3, 2018): 241–52. http://dx.doi.org/10.1127/1438-9134/2017/241.

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6

Kong, Hyun Hee. "Molecular Phylogeny of Acanthamoeba." Korean Journal of Parasitology 47, Suppl (2009): S21. http://dx.doi.org/10.3347/kjp.2009.47.s.s21.

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7

Walker, William F. "Phylogeny and Molecular Data." Science 243, no. 4890 (January 27, 1989): 548–49. http://dx.doi.org/10.1126/science.243.4890.548.b.

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8

WALKER, W. F. "Phylogeny and Molecular Data." Science 243, no. 4890 (January 27, 1989): 548–49. http://dx.doi.org/10.1126/science.243.4890.548-a.

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9

BODE, H. R., and R. E. STEELE. "Phylogeny and Molecular Data." Science 243, no. 4890 (January 27, 1989): 549–50. http://dx.doi.org/10.1126/science.243.4890.549.

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10

Dunn, Katherine A., and John F. Morrissey. "Molecular Phylogeny of Elasmobranchs." Copeia 1995, no. 3 (August 18, 1995): 526. http://dx.doi.org/10.2307/1446750.

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11

YOKOYAMA, JUN. "Molecular Phylogeny and Coevolution." Plant Species Biology 9, no. 3 (December 1994): 163–67. http://dx.doi.org/10.1111/j.1442-1984.1994.tb00097.x.

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12

Yamasaki, Hiroshi, Shimpei F. Hiruta, and Hiroshi Kajihara. "Molecular phylogeny of kinorhynchs." Molecular Phylogenetics and Evolution 67, no. 2 (May 2013): 303–10. http://dx.doi.org/10.1016/j.ympev.2013.02.016.

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13

Denda, T., K. Watanabe, K. Kosuge, T. Yahara, and M. Ito. "Molecular phylogeny ofBrachycome (Asteraceae)." Plant Systematics and Evolution 217, no. 3-4 (1999): 299–311. http://dx.doi.org/10.1007/bf00984372.

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14

García, Dania, Alberto M. Stchigel, José Cano, Misericordia Calduch, David L. Hawksworth, and Josep Guarro. "Molecular phylogeny of Coniochaetales." Mycological Research 110, no. 11 (November 2006): 1271–89. http://dx.doi.org/10.1016/j.mycres.2006.07.007.

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15

Lowenstein, Jerold M. "Radioimmunoassay and molecular phylogeny." BioEssays 2, no. 2 (February 1985): 60–62. http://dx.doi.org/10.1002/bies.950020205.

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16

Qi, Chen-Feng, François Bonhomme, Alicia Buckler-White, Charles Buckler, Annie Orth, Marilyn R. Lander, Sisir K. Chattopadhyay, and Herbert C. Morse III. "Molecular phylogeny of Fv1." Mammalian Genome 9, no. 12 (December 1, 1998): 1049–55. http://dx.doi.org/10.1007/s003359900923.

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17

Schlegel, Martin. "Molecular phylogeny of eukaryotes." Trends in Ecology & Evolution 9, no. 9 (September 1994): 330–35. http://dx.doi.org/10.1016/0169-5347(94)90153-8.

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18

Birstein, Vadim J., and Rob DeSalle. "Molecular Phylogeny of Acipenserinae." Molecular Phylogenetics and Evolution 9, no. 1 (February 1998): 141–55. http://dx.doi.org/10.1006/mpev.1997.0443.

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19

Ahmadi, Narges, Mahdi Arzanlou, and Abolfazl Narmani. "Molecular phylogeny and morphology differentiate a new Neosetophoma species from Iran." Nova Hedwigia 112, no. 3-4 (May 27, 2021): 383–97. http://dx.doi.org/10.1127/nova_hedwigia/2021/0626.

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20

Maruyama, T., M. Ishikura, S. Yamazaki, and S. Kanai. "Molecular Phylogeny of Zooxanthellate Bivalves." Biological Bulletin 195, no. 1 (August 1998): 70–77. http://dx.doi.org/10.2307/1542777.

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21

McHugh, Damhnait. "Molecular phylogeny of the Annelida." Canadian Journal of Zoology 78, no. 11 (November 1, 2000): 1873–84. http://dx.doi.org/10.1139/z00-141.

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Traditionally, the Annelida has been classified as a group comprising the Polychaeta and the Clitellata. Recent phylogenetic analyses have led to profound changes in the view that the Annelida, as traditionally formulated, is a natural, monophyletic group. Both molecular and morphological analyses support placement of the Siboglinidae (formerly the Pogonophora) as a derived group within the Annelida; there is also evidence, based on molecular analysis of the nuclear gene elongation factor-1α, that the unsegmented echiurids are derived annelids. While monophyly of the Clitellata is well-supported by both molecular and morphological analyses, there is no molecular evidence to support monophyly of the polychaete annelids; the Clitellata fall within a paraphyletic polychaete grade. Relationships among groups of polychaete annelids have not yet been resolved by molecular analysis. Within the Clitellata, paraphyly of the Oligochaeta was indicated in a phylogenetic analysis of cytochrome c oxidase I, which supported a sister relationship between the leeches, including an acanthobdellid and a branchiobdellid, and two of the four oligochaetes in the analysis. There is some evidence from analysis of 18S rRNA sequences for a sister-group relationship between the clitellates and the taxon Aeolosoma. There is no agreement regarding the body form of the basal annelid, and while molecular analyses provide strong support for the Eutrochozoa, the identity of sister-group to the Annelida among the Eutrochozoa remains enigmatic. It is recommended that future investigations include additional conserved gene sequences and expanded taxon sampling. It is likely that the most productive approach to resolving annelid phylogeny, and thus increasing our understanding of annelid evolution, will come from combined analyses of several gene sequences.

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22

Baguñà, Jaume, and Marta Riutort. "Molecular phylogeny of the Platyhelminthes." Canadian Journal of Zoology 82, no. 2 (February 1, 2004): 168–93. http://dx.doi.org/10.1139/z03-214.

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The phylum Platyhelminthes has traditionally been considered the most basal bilaterian taxon. The main difficulty with this placement is the lack of convincing synapomorphies for all Platyhelminthes, which suggest that they are polyphyletic. Recent molecular findings based on 18S rDNA sequence data and number and type of Hox genes strongly suggest that the majority of Platyhelminthes are members of the lophotrochozoan protostomes, whereas the Acoelomorpha (Acoela + Nemertodermatida) fall outside of the Platyhelminthes as the most basal bilaterian taxon. Here we review phylum-wide analyses based on complete ribosomal and other nuclear genes addressed to answer the main issues facing systematics and phylogeny of Platyhelminthes. We present and discuss (i) new corroborative evidence for the polyphyly of the Platyhelminthes and the basal position of Acoelomorpha; (ii) a new consensus internal tree of the phylum; (iii) the nature of the sister group to the Neodermata and the hypotheses on the origin of parasitism; and (iv) the internal phylogeny of some rhabditophoran orders. Some methodological caveats are also introduced. The need to erect a new phylum, the Acoelomorpha, separate from the Platyhelminthes (now Catenulida + Rhabditophora) and based on present and new morphological and molecular characters is highlighted, and a proposal made.

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23

FIELD, K. G., G. J. OLSEN, S. J. GIOVANNONI, E. C. RAFF, N. R. PACE, and R. A. RAFF. "Response: Phylogeny and Molecular Data." Science 243, no. 4890 (January 27, 1989): 550–51. http://dx.doi.org/10.1126/science.243.4890.550.

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24

Pratibha, J. "Molecular phylogeny of Speiropsis pedatospora." Mycosphere 7, no. 5 (2016): ุ679—ุึ686. http://dx.doi.org/10.5943/mycosphere/7/5/12.

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25

Nakase, Takashi. "Molecular Phylogeny of Ascomycetous Yeasts." Journal of the agricultural chemical society of Japan 68, no. 1 (1994): 63–68. http://dx.doi.org/10.1271/nogeikagaku1924.68.63.

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26

Hedges, S. B., and L. L. Poling. "A Molecular Phylogeny of Reptiles." Science 283, no. 5404 (February 12, 1999): 998–1001. http://dx.doi.org/10.1126/science.283.5404.998.

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27

Hausdorf, B. "Molecular phylogeny of araneomorph spiders." Journal of Evolutionary Biology 12, no. 5 (September 1999): 980–85. http://dx.doi.org/10.1046/j.1420-9101.1999.00104.x.

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28

Marimon, R., J. Gene, J. Cano, L. Trilles, M. Dos Santos Lazera, and J. Guarro. "Molecular Phylogeny of Sporothrix schenckii." Journal of Clinical Microbiology 44, no. 9 (September 1, 2006): 3251–56. http://dx.doi.org/10.1128/jcm.00081-06.

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29

HARASEWYCH, M. G., S. LAURA ADAMKEWICZ, JUDITH A. BLAKE, DEBORAH SAUDEK, TRACY SPRIGGS, and CAROL J. BULT. "NEOGASTROPOD PHYLOGENY: A MOLECULAR PERSPECTIVE." Journal of Molluscan Studies 63, no. 3 (August 1997): 327–51. http://dx.doi.org/10.1093/mollus/63.3.327.

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30

Kamaruzzam, B. Y., B. Akbar John, K. Zaleha, and K. C. A. Jalal. "Molecular Phylogeny of Horseshoe Crab." Asian Journal of Biotechnology 3, no. 3 (April 15, 2011): 302–9. http://dx.doi.org/10.3923/ajbkr.2011.302.309.

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31

Qing, Xue, Wilfrida Decraemer, Myriam Claeys, and Wim Bert. "Molecular phylogeny ofMalenchusandFilenchus(Nematoda: Tylenchidae)." Zoologica Scripta 46, no. 5 (March 20, 2017): 625–36. http://dx.doi.org/10.1111/zsc.12236.

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32

Nanni, L., N. Ferradini, F. Taffetani, and R. Papa. "Molecular Phylogeny of Anthyllis spp." Plant Biology 6, no. 4 (July 2004): 454–64. http://dx.doi.org/10.1055/s-2004-820968.

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33

Jørgensen, Aslak, Søren Faurby, Jesper G. Hansen, Nadja Møbjerg, and Reinhardt M. Kristensen. "Molecular phylogeny of Arthrotardigrada (Tardigrada)." Molecular Phylogenetics and Evolution 54, no. 3 (March 2010): 1006–15. http://dx.doi.org/10.1016/j.ympev.2009.10.006.

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34

Waeschenbach, Andrea, P. D. Taylor, and D. T. J. Littlewood. "A molecular phylogeny of bryozoans." Molecular Phylogenetics and Evolution 62, no. 2 (February 2012): 718–35. http://dx.doi.org/10.1016/j.ympev.2011.11.011.

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35

Gryganskyi, Andrii P., Richard A. Humber, Matthew E. Smith, Jolanta Miadlikovska, Steven Wu, Kerstin Voigt, Grit Walther, Iryna M. Anishchenko, and Rytas Vilgalys. "Molecular phylogeny of the Entomophthoromycota." Molecular Phylogenetics and Evolution 65, no. 2 (November 2012): 682–94. http://dx.doi.org/10.1016/j.ympev.2012.07.026.

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36

Korn, Michael, Nicolas Rabet, Hemant V. Ghate, Federico Marrone, and Anna K. Hundsdoerfer. "Molecular phylogeny of the Notostraca." Molecular Phylogenetics and Evolution 69, no. 3 (December 2013): 1159–71. http://dx.doi.org/10.1016/j.ympev.2013.08.006.

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37

Langeneck, Joachim, Michele Barbieri, Ferruccio Maltagliati, and Alberto Castelli. "Molecular phylogeny of Paraonidae (Annelida)." Molecular Phylogenetics and Evolution 136 (July 2019): 1–13. http://dx.doi.org/10.1016/j.ympev.2019.03.023.

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38

Pitt, Tyrone L., Suwanna Trakulsomboon, and David A. B. Dance. "Molecular phylogeny of Burkholderia pseudomallei." Acta Tropica 74, no. 2-3 (February 2000): 181–85. http://dx.doi.org/10.1016/s0001-706x(99)00068-6.

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39

Pillet, Loïc, Ivan Voltski, Sergei Korsun, and Jan Pawlowski. "Molecular phylogeny of Elphidiidae (foraminifera)." Marine Micropaleontology 103 (September 2013): 1–14. http://dx.doi.org/10.1016/j.marmicro.2013.07.001.

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40

Kofuji, Rumiko, Kunihiko Ueda, Kazuo Yamaguchi, and Tatemi Shimizu. "Molecular phylogeny in the Lardizabalaceae." Journal of Plant Research 107, no. 3 (September 1994): 339–48. http://dx.doi.org/10.1007/bf02344262.

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41

Lopez, Philippe, and Eric Bapteste. "Molecular phylogeny: reconstructing the forest." Comptes Rendus Biologies 332, no. 2-3 (February 2009): 171–82. http://dx.doi.org/10.1016/j.crvi.2008.07.003.

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42

Lakshmi, Mukkamala, Madasamy Parani, and Ajay Parida. "MOLECULAR PHYLOGENY OF MANGROVES IX." Aquatic Botany 74, no. 3 (November 2002): 201–17. http://dx.doi.org/10.1016/s0304-3770(02)00105-5.

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43

Rousset, Vincent, Fredrik Pleijel, Greg W. Rouse, Christer Erséus, and Mark E. Siddall. "A molecular phylogeny of annelids." Cladistics 23, no. 1 (February 2007): 41–63. http://dx.doi.org/10.1111/j.1096-0031.2006.00128.x.

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44

Lo, N., O. Kitade, T. Miura, R. Constantino, and T. Matsumoto. "Molecular phylogeny of the Rhinotermitidae." Insectes Sociaux 51, no. 4 (November 2004): 365–71. http://dx.doi.org/10.1007/s00040-004-0759-8.

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45

Sluiman, Hans J. "Molecular phylogeny of Chaetosphaeridium revisited." Journal of Phycology 36, no. 2 (December 25, 2001): 443–44. http://dx.doi.org/10.1046/j.1529-8817.2000.99192.x.

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46

Sun, T., Y. Liu, Y. Zhang, and L. Zhou. "Molecular Phylogeny of Coxsackievirus A16." Journal of Clinical Microbiology 52, no. 10 (September 16, 2014): 3829–30. http://dx.doi.org/10.1128/jcm.01330-14.

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47

Palmer, Jeffrey D. "Chloroplast DNA and molecular phylogeny." BioEssays 2, no. 6 (June 1985): 263–67. http://dx.doi.org/10.1002/bies.950020607.

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48

Guigo, Roderic, Ilya Muchnik, and Temple F. Smith. "Reconstruction of Ancient Molecular Phylogeny." Molecular Phylogenetics and Evolution 6, no. 2 (October 1996): 189–213. http://dx.doi.org/10.1006/mpev.1996.0071.

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49

Phosri, Cherdchai, María P. Martín, Roy Watling, Mikael Jeppson, and Prakitsin Sihanonth. "Molecular phylogeny and re-assessment of some Scleroderma spp. (Gasteromycetes)." Anales del Jardín Botánico de Madrid 66, S1 (December 31, 2009): 83–91. http://dx.doi.org/10.3989/ajbm.2199.

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50

Guillon, Jean-Michel, Loreleï Guéry, Vincent Hulin, and Marc Girondot. "A large phylogeny of turtles (Testudines) using molecular data." Contributions to Zoology 81, no. 3 (July 4, 2012): 147–58. http://dx.doi.org/10.1163/18759866-08103002.

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Turtles (Testudines) form a monophyletic group with a highly distinctive body plan. The taxonomy and phylogeny of turtles are still under discussion, at least for some clades. Whereas in most previous studies, only a few species or genera were considered, we here use an extensive compilation of DNA sequences from nuclear and mitochondrial genes for more than two thirds of the total number of turtle species to infer a large phylogeny for this taxon. Our results enable us to discuss previous hypotheses on species phylogeny or taxonomy. We are thus able to discriminate between competing hypotheses and to suggest taxonomical modifications. Finally, we pinpoint the remaining ambiguities for this phylogeny and the species for which new sequences should be obtained to improve phylogenetic resolution.

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