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Dissertations / Theses on the topic 'Mitogenomes'

Author: Grafiati
Published: 10 December 2022
Last updated: 31 July 2025

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1

BRANDINI, STEFANIA. "Employing mitogenomes to reconstruct migration and dispersal events." Doctoral thesis, Università degli studi di Pavia, 2017. http://hdl.handle.net/11571/1203286.

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The mitochondrial genome is organized as a small circular molecule of DNA, present in hundreds/thousands of copies per cell and characterized by a much greater evolutionary rate than the average nuclear gene. The mitochondrial DNA (mtDNA) is transmitted as a non-recombining unit only through the mother and its variability is originated only by the sequential accumulation of new mutations. During millennia, this process of molecular divergence has given rise to monophyletic units (haplogroups) that are generally restricted to specific geographic areas or population groups. The study of the geog
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2

CAPODIFERRO, MARCO ROSARIO. "From modern mitogenomes to archaeogenomics: exploring the past of human and animal populations." Doctoral thesis, Università degli studi di Pavia, 2019. http://hdl.handle.net/11571/1231867.

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3

Shen, Hong. "Mitogenomic analysis of decapod phylogeny." Doctoral thesis, Humboldt-Universität zu Berlin, Mathematisch-Naturwissenschaftliche Fakultät I, 2012. http://dx.doi.org/10.18452/16505.

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Für eine umfassende Untersuchung der Phylogenie der Decapoda wurden von mir die mitochondrialen Genome von 13 Dekapoden sequenziert. Zusammen mit den in der GenBank verfügbaren Sequenzen von 31 Dekapoden und dem von der Universität Bonn zur Verfügung gestellten mitochondrialen Genom von Dromia personata deckt dieser Datensatz alle großen Teilgruppen der Decapoda ab. Maximum likelihood (ML)-Analysen und Bayesian inference (BI)-Analysen der Nucleotidsequenzen und Aminosäuresequenzen ergaben bezüglich der Verwandtschaft der hochrangigen Taxa ähnliche Topologien: (((((((Anomala, Brachyura), Thala
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4

Briscoe, Andrew G. "Advancing mitogenomics : a case study in the Araneae." Thesis, Bangor University, 2013. https://research.bangor.ac.uk/portal/en/theses/advancing-mitogenomics--a-case-study-in-the-araneae(f642bbb7-75fa-49ea-a59d-23274019e8fa).html.

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5

Tabata, Ryouichi. "The origin, history and mitogenome evolution of fishes in Lake Biwa." 京都大学 (Kyoto University), 2016. http://hdl.handle.net/2433/215345.

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6

Garbutt, James. "The complete mitogenome of two Australian lampreys: mordacia mordax and mordacia praecox." Thesis, Garbutt, James (2015) The complete mitogenome of two Australian lampreys: mordacia mordax and mordacia praecox. Honours thesis, Murdoch University, 2015. https://researchrepository.murdoch.edu.au/id/eprint/30595/.

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As one of only two surviving outgroups to all jawed vertebrates, lampreys (Petromyzontiformes) can provide important information in our understanding of early vertebrate evolution. However, with many phylogenetic aspects of lamprey evolution still uncertain, the ability to use contemporary lampreys in this role depends on robust phylogenetic hypotheses regarding the interrelationship of the three lamprey families, as well as the relationship between lampreys and hagfishes. To achieve this, complete mitogenome data of Southern Hemisphere lampreys is required. Another contentious issue in lampre
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7

Van, de Paer Céline. "Diversité structurelle et évolution contrastée des génomes cytoplasmiques des plantes à fleurs : une approche phylogénomique chez les Oleaceae." Thesis, Toulouse 3, 2017. http://www.theses.fr/2017TOU30228/document.

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Chez les plantes, la dynamique structurelle et l'évolution concertée des génomes nucléaire et cytoplasmiques restent peu documentées. L'objectif de cette thèse était d'étudier la diversité structurelle et l'évolution des mitogénomes et des plastomes chez les Oleaceae à l'aide d'une approche de phylogénomique. Nous avons d'abord assemblé des mitogénomes à partir de données de séquençage de faible couverture, obtenues à partir de matériel frais et d'herbier. Une grande variation de structure du mitogénome a été observée chez l'olivier, et un gène chimérique potentiellement associé à un type de s
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8

Rodovalho, Cynara de Melo [UNESP]. "Caracterização do transcriptoma e genoma mitocondrial da formiga cortadeira Atta laevigata (Formicidae : Attini)." Universidade Estadual Paulista (UNESP), 2011. http://hdl.handle.net/11449/100531.

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Made available in DSpace on 2014-06-11T19:30:55Z (GMT). No. of bitstreams: 0 Previous issue date: 2011-02-24Bitstream added on 2014-06-13T18:41:10Z : No. of bitstreams: 1 rodovalho_cm_dr_rcla.pdf: 1352309 bytes, checksum: b91a746d690f5903c39601146a591fab (MD5)<br>Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)<br>Formigas cortadeiras do gênero Atta, popularmente conhecidas como saúvas, são as mais derivadas dentro da tribo Attini. Apresentam grande importância ecológica, porém, pelo hábito de cortarem folhas para manutenção do fungo simbionte e pelo enorme tamanho das col
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9

Wasef, Sally A. "Ancient Egyptian Sacred Ibis Mummies: Evolutionary Mitogenomics Resolves the History of Ancient Farming." Thesis, Griffith University, 2016. http://hdl.handle.net/10072/367796.

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Animal mummies were extremely important to the people of ancient Egypt. The extraordinary number of different animal species that were mummified is evidence of this importance. The vast majority of these mummies served as ritual offerings by pilgrims to please the gods. These are known as “votive offerings”, and are thought to have flourished from the Twenty-Sixth Dynasty (664-525 BC) to the Graeco-Roman Period (30 BC–300 AD). Of these, none are found in quantities as great as the Sacred Ibis (Threskiornis aethiopicus) that were offered to the God of Wisdom and Writing, Thoth. It is estimated
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10

McCullagh, Bonnie. "Sequence evolution among divergent mitochondrial haplotypes within species of Junonia butterflies." Journal of Asia-Pacific Entomology, 2015. http://hdl.handle.net/1993/31105.

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The New World Junonia butterflies include well-studied model organisms yet their phylogeny remains unresolved by traditional cox1 DNA barcodes. Sixteen Junonia mitochondrial genomes were sequenced using next generation MiSeq technology. Junonia lemonias, an Old World species, has mitochondrial genome features typical of Ditrysian Lepidoptera, and synteny is maintained throughout Junonia. Analysis of Junonia mitogenomes produced a robust phylogeny that was used with biogeographic information to infer that Junonia crossed the Pacific Ocean to invade the New World on 3 separate occasions. Junonia
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11

Finnegan, Kimberly A. "A Mitogenomics View of the Population Structure and Evolutionary History of the Basking Shark Cetorhinus maximum." NSUWorks, 2014. http://nsuworks.nova.edu/occ_stuetd/13.

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The basking shark, Cetorhinus maximus, has historically been a target of international fisheries, leading to well-documented declines in parts of its global distribution. Currently, the basking shark is listed as globally ‘Vulnerable’ and regionally ‘Endangered’ (North Pacific and Northeast Atlantic) on the IUCN Red List of Threatened Species, rendering the species an international conservation priority. Here, we assessed the global matrilineal genetic population structure and evolutionary history of the basking shark by completing the first whole mitochondrial genome sequence level survey of
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12

Shen, Hong [Verfasser], Gerhard [Akademischer Betreuer] Scholtz, Thomas [Akademischer Betreuer] Stach, and Lars [Akademischer Betreuer] Podsiadlowski. "Mitogenomic analysis of decapod phylogeny : (Crustacea, Malacostraca) / Hong Shen. Gutachter: Gerhard Scholtz ; Thomas Stach ; Lars Podsiadlowski." Berlin : Humboldt Universität zu Berlin, Mathematisch-Naturwissenschaftliche Fakultät I, 2012. http://d-nb.info/1022837559/34.

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13

ROCHA, Patrícia Keytth Lins. "Qual região do DNA mitocondrial reflete a história evolutiva da ordem Lepidoptera?" Universidade Federal de Pernambuco, 2013. https://repositorio.ufpe.br/handle/123456789/13136.

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Submitted by Andre Moraes Queiroz (andre.moraesqueiroz@ufpe.br) on 2015-04-14T15:05:53Z No. of bitstreams: 2 Dissertação Patricia Rocha.pdf: 2020756 bytes, checksum: 96804531919a1d7e9cb5ab9787d73242 (MD5) license_rdf: 1232 bytes, checksum: 66e71c371cc565284e70f40736c94386 (MD5)<br>Made available in DSpace on 2015-04-14T15:05:53Z (GMT). No. of bitstreams: 2 Dissertação Patricia Rocha.pdf: 2020756 bytes, checksum: 96804531919a1d7e9cb5ab9787d73242 (MD5) license_rdf: 1232 bytes, checksum: 66e71c371cc565284e70f40736c94386 (MD5) Previous issue date: 2013<br>FACEPE<br>A ordem Lepidoptera apre
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14

Dong, Jiajia. "Systematics and biogeography of the genus Cardiodactylus (Orthoptera : Eneopterinae : Lebinthini) in the Southeast Asia." Thesis, Paris, Muséum national d'histoire naturelle, 2017. http://www.theses.fr/2017MNHN0009.

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Parmi les grillons de la sous-famille Eneopterinae, Cardiodactylus Saussure, 1878 (Orthoptera : Eneopterinae : Lebinthini) est le genre avec le plus grand nombre d’espèces et le plus largement distribué. Il comprend 82 espèces organisées en deux groupes d'espèces (groupes Noveaguineae et Efordi). L’aire de distribution des espèces englobe des centaines d'îles et de territoires allant des côtes de l'Asie du Sud-Est aux îles Samoa. Les espèces de Cardiodactylus présentent des patrons de distribution contrastés, certaines étant fortement endémiques tandis que d'autres sont distribuées dans toute
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15

Rodovalho, Cynara de Melo. "Caracterização do transcriptoma e genoma mitocondrial da formiga cortadeira Atta laevigata (Formicidae : Attini) /." Rio Claro : [s.n.], 2011. http://hdl.handle.net/11449/100531.

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Resumo: Formigas cortadeiras do gênero Atta, popularmente conhecidas como saúvas, são as mais derivadas dentro da tribo Attini. Apresentam grande importância ecológica, porém, pelo hábito de cortarem folhas para manutenção do fungo simbionte e pelo enorme tamanho das colônias, causam muitos prejuízos às lavouras, pastagens e plantações, sendo consideradas pragas agrícolas. Atta laevigata Smith, 1858 apresenta vasta distribuição pelo Brasil e é responsável pela herbivoria de inúmeras plantas dicotiledôneas, gramíneas e espécies nativas de diferentes biomas. O presente trabalho teve como objetiv
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16

Botero-Castro, Fidel. "Systématique, phylogénie et évolution moléculaires des Phyllostomidae (Mammalia, Chiroptera) : une approche mitogénomique comparative." Thesis, Montpellier 2, 2014. http://www.theses.fr/2014MON20053/document.

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L'acquisition des données moléculaires a été bouleversée par le développement des techniques de séquençage haut-débit. Celles-ci ont augmenté la quantité des données et ont fait diminuer le coût de manière considérable. Ces nouvelles approches ont également redonné accès à des sources de matériel biologique qui étaient auparavant inutilisables en raison de la faible quantité et la forte dégradation de l'ADN qu'elles fournissent, notamment des tissus anciens, des échantillons de musée voire du matériel fossile. Un avantage supplémentaire c'est la possibilité de multiplexer les échantillons, c'e
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17

Zadra, Nicola. "Genome-scaled molecular clock studies of invasive mosquitoes and other organisms of societal relevance." Doctoral thesis, Università degli studi di Trento, 2022. http://hdl.handle.net/11572/351463.

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Molecular dating (or molecular clock) is a powerful technique that uses the mutation rate of biomolecules to estimate divergence times among organisms. In the last two decades, the theory behind the molecular clock has been intensively developed, and it is now possible to employ sophisticated evolutionary models on genome-scaled datasets in a Bayesian framework. The molecular clock has been successfully applied to virtually all types of organisms and molecules to estimate timing of speciation, timing of gene duplications, and generation times: this knowledge allows contextualizing past and pre
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18

Al, Arab Marwa. "Sequences Signature and Genome Rearrangements in Mitogenomes." 2017. https://ul.qucosa.de/id/qucosa%3A20973.

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During the last decades, mitochondria and their DNA have become a hot topic of research due to their essential roles which are necessary for cells survival and pathology. In this study, multiple methods have been developed to help with the understanding of mitochondrial DNA and its evolution. These methods tackle two essential problems in this area: the accurate annotation of protein-coding genes and mitochondrial genome rearrangements. Mitochondrial genome sequences are published nowadays with increasing pace, which creates the need for accurate and fast annotation tools that do not require m
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19

Teixeira, João Eduardo Afonso Teiga. "Mitogenomic Phylogeny of Freshwater mussels (Bivalvia: Unionida)." Master's thesis, 2021. http://hdl.handle.net/10348/10575.

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Dissertação de Mestrado em Bioinformática e Aplicações às Ciências da Vida<br>Freshwater mussels (Bivalvia: Unionida) play key ecological roles and provide important services to humans. However, they are among the most threatened faunal groups in the world. Most freshwater mussel species present two divergent mitochondrial DNA molecules (F-type or M-type) in males as a result of Doubly Uniparental Inheritance. The number of available freshwater mussel mitogenomes is low, particularly for M-type genomes. A further shortcoming is that published mitogenomes are restricted to only a few families w
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20

Lin, Jia-Sian, and 林佳賢. "Evolution and phylogeny of Microhyla fissipes and its relavent taxa infering from mitogenome." Thesis, 2018. http://ndltd.ncl.edu.tw/handle/geg8ju.

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碩士<br>國立中央大學<br>生命科學系<br>106<br>Microhyla fissipes was first recognized in Tainan, Taiwan (type locality), however it is not highly accepted. Herein, author used the sample from Yi-Lan, Taiwan as a representative of Taiwan samples and obtained the complete mitochondrial genome sequence (accession number: MF673131) in order to study the phylogeny of Microhyla fissipes and its relevants, especially in the comparison with the China sample (NC_009422). Although the genome of our sample (16,729 base pairs) contains genes and gene order almost identical to other amphibians’, some variations have bee
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21

Chao, Shu-Chen, and 趙淑貞. "Mitogenome comparison and phylogeography of the Pygoplites diacanthus(Pomacanthidae) geminate species in Indo-Pacific Ocean." Thesis, 2015. http://ndltd.ncl.edu.tw/handle/89453090955497138238.

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碩士<br>國立臺灣海洋大學<br>環境生物與漁業科學學系<br>103<br>There are 8 genus and around 90 species of Pomacanthidae in the world. The Royal angelfish or regal angelfish, Pygoplites diacanthus, is a species of marine angelfish of the family Pomacanthidae, and the monotypic genus Pygoplites. It was found in tropical Indo-Pacific oceans, ranged from East Africa, Red Sea, east to French Polynesia Tuamotu Archipelago, north to Japan and south to Australia. This species is popular in aquarium trade because of its colorful body patterns. The Royal angelfish in Indian and Pacific Oceans have has different color morph, T
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22

Golombek, Anja. "Inferring the phylogeny of problematic metazoan taxa using mitogenomic and phylogenomic data." Doctoral thesis, 2019. https://repositorium.ub.uni-osnabrueck.de/handle/urn:nbn:de:gbv:700-201905231583.

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The evolutionary origin and the phylogeny of higher metazoan taxa is still under debate although considerable progress has been made in the past 20 years. Metazoa represents a monophyletic group of highly diverse animals including Bilateria, Cnidaria, Porifera, Ctenophores, and Placozoa. Bilateria comprises the majority of metazoans and consists of three major clades: Deuterostomia, Spiralia (= Lophotrochozoa sensu lato), and Ecdysozoa, whereas the sister group taxa Spiralia and Ecdyzozoa form the monophyletic clade Protostomia. Molecular data have profoundly changed the view of the bilaterian
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23

Chuang, Yao-Yang. "Mitogenomics and molecular evolution of the group I intron in the cytochrome oxidase I gene of Siderastrea (Cnidaria;Scleractinia;Siderastreidae)." 2006. http://www.cetd.com.tw/ec/thesisdetail.aspx?etdun=U0001-2507200610263700.

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24

Chuang, Yao-Yang, and 莊曜陽. "Mitogenomics and molecular evolution of the group I intron in the cytochrome oxidase I gene of Siderastrea (Cnidaria;Scleractinia;Siderastreidae)." Thesis, 2006. http://ndltd.ncl.edu.tw/handle/27301651163856695895.

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碩士<br>國立臺灣大學<br>海洋研究所<br>94<br>Animal mitochondrial genome was well studied in past decades with a closed circular structure containing 13 protein coding regions, 2 rRNAs and 22 tRNAs. Nevertheless, mitochondrial genomes of the Anthozoa are different from the typical animal mt genome in several characteristics including, losing most of the tRNAs, possessing group I introns, incompact gene arrangement, and slow evolution. Even within the major lineages of the Anthozoa, the gene containing group I intron and gene arrangement could be very different. Thus, more information should be obtained i
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25

Campbell, Véronique. "Chimères, données manquantes et congruence : validation de différentes méthodes par simulations et application à la phylogénie des mammifères." Thèse, 2009. http://hdl.handle.net/1866/6604.

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26

Capt, Charlotte. "Démystifier le lien entre la double transmission uniparentale des mitochondries et la détermination du sexe chez les bivalves." Thèse, 2019. http://hdl.handle.net/1866/23494.

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Les systèmes sexuels et les mécanismes responsables de la détermination du sexe chez les animaux sont issus de stratégies diverses. Cette incroyable diversité se reflète notamment chez les bivalves, où autant les facteurs génétiques qu’environnementaux y jouent un rôle, avec des espèces utilisant divers modes de reproduction, tels que le gonochorisme ou l’hermaphroditisme simultané ou séquentiel. La découverte la plus notable est celle d’un système de déterminisme sexuel unique qui impliquerait les mitochondries. Spécifiquement, un système de transmission sexe-spécifique de l’ADN mitochondrial
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27

Nadimi, Maryam. "Comparative mitochondrial genomics toward understanding genetics and evolution of arbuscular mycorrhizal fungi." Thèse, 2015. http://hdl.handle.net/1866/12376.

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Les champignons mycorhiziens arbusculaires (CMA) sont très répandus dans le sol où ils forment des associations symbiotiques avec la majorité des plantes appelées mycorhizes arbusculaires. Le développement des CMA dépend fortement de la plante hôte, de telle sorte qu'ils ne peuvent vivre à l'état saprotrophique, par conséquent ils sont considérés comme des biotrophes obligatoires. Les CMA forment une lignée évolutive basale des champignons et ils appartiennent au phylum Glomeromycota. Leurs mycélia sont formés d’un réseau d’hyphes cénocytiques dans lesquelles les noyaux et les organites cellul
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