Journal articles on the topic 'MinION sequencing'
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Batovska, Jana, Stacey E. Lynch, Brendan C. Rodoni, Tim I. Sawbridge, and Noel OI Cogan. "Metagenomic arbovirus detection using MinION nanopore sequencing." Journal of Virological Methods 249 (November 2017): 79–84. http://dx.doi.org/10.1016/j.jviromet.2017.08.019.
Full textLu, Hengyun, Francesca Giordano, and Zemin Ning. "Oxford Nanopore MinION Sequencing and Genome Assembly." Genomics, Proteomics & Bioinformatics 14, no. 5 (October 2016): 265–79. http://dx.doi.org/10.1016/j.gpb.2016.05.004.
Full textLemon, Jamie K., Pavel P. Khil, Karen M. Frank, and John P. Dekker. "Rapid Nanopore Sequencing of Plasmids and Resistance Gene Detection in Clinical Isolates." Journal of Clinical Microbiology 55, no. 12 (October 11, 2017): 3530–43. http://dx.doi.org/10.1128/jcm.01069-17.
Full textAgakhanov, M. M., E. A. Grigoreva, E. K. Potokina, P. S. Ulianich, and Y. V. Ukhatova. "Genome assembly of Vitis rotundifolia Michx. using third-generation sequencing (Oxford Nanopore Technologies)." Proceedings on applied botany, genetics and breeding 182, no. 2 (July 1, 2021): 63–71. http://dx.doi.org/10.30901/2227-8834-2021-2-63-71.
Full textTafess, Ketema, Timothy Ting Leung Ng, Hiu Yin Lao, Kenneth Siu Sing Leung, Kingsley King Gee Tam, Rahim Rajwani, Sarah Tsz Yan Tam, et al. "Targeted-Sequencing Workflows for Comprehensive Drug Resistance Profiling of Mycobacterium tuberculosis Cultures Using Two Commercial Sequencing Platforms: Comparison of Analytical and Diagnostic Performance, Turnaround Time, and Cost." Clinical Chemistry 66, no. 6 (May 2, 2020): 809–20. http://dx.doi.org/10.1093/clinchem/hvaa092.
Full textde Lannoy, Carlos, Dick de Ridder, and Judith Risse. "A sequencer coming of age: De novo genome assembly using MinION reads." F1000Research 6 (July 7, 2017): 1083. http://dx.doi.org/10.12688/f1000research.12012.1.
Full textde Lannoy, Carlos, Dick de Ridder, and Judith Risse. "The long reads ahead: de novo genome assembly using the MinION." F1000Research 6 (December 12, 2017): 1083. http://dx.doi.org/10.12688/f1000research.12012.2.
Full textJaudou, Sandra, Mai-Lan Tran, Fabien Vorimore, Patrick Fach, and Sabine Delannoy. "Evaluation of high molecular weight DNA extraction methods for long-read sequencing of Shiga toxin-producing Escherichia coli." PLOS ONE 17, no. 7 (July 13, 2022): e0270751. http://dx.doi.org/10.1371/journal.pone.0270751.
Full textWei, Shan, Zachary R. Weiss, and Zev Williams. "Rapid Multiplex Small DNA Sequencing on the MinION Nanopore Sequencing Platform." G3: Genes|Genomes|Genetics 8, no. 5 (March 14, 2018): 1649–57. http://dx.doi.org/10.1534/g3.118.200087.
Full textHosokawa-Muto, Junji, Yukiko Sassa-O’Brien, Yoshihito Fujinami, and Hiroaki Nakahara. "Analysis Comparison for Rapid Identification of Pathogenic Virus from Infected Tissue Samples." Diagnostics 12, no. 1 (January 14, 2022): 196. http://dx.doi.org/10.3390/diagnostics12010196.
Full textWhite, Ruby, Christophe Pellefigues, Franca Ronchese, Olivier Lamiable, and David Eccles. "Investigation of chimeric reads using the MinION." F1000Research 6 (May 5, 2017): 631. http://dx.doi.org/10.12688/f1000research.11547.1.
Full textWhite, Ruby, Christophe Pellefigues, Franca Ronchese, Olivier Lamiable, and David Eccles. "Investigation of chimeric reads using the MinION." F1000Research 6 (August 16, 2017): 631. http://dx.doi.org/10.12688/f1000research.11547.2.
Full textIp, Camilla L. C., Matthew Loose, John R. Tyson, Mariateresa de Cesare, Bonnie L. Brown, Miten Jain, Richard M. Leggett, et al. "MinION Analysis and Reference Consortium: Phase 1 data release and analysis." F1000Research 4 (October 15, 2015): 1075. http://dx.doi.org/10.12688/f1000research.7201.1.
Full textWerner, David, Kishor Acharya, Adrian Blackburn, Rixia Zan, Jidapa Plaimart, Ben Allen, Shaaban Mrisho Mgana, et al. "MinION Nanopore Sequencing Accelerates Progress towards Ubiquitous Genetics in Water Research." Water 14, no. 16 (August 12, 2022): 2491. http://dx.doi.org/10.3390/w14162491.
Full textHargreaves, Adam D., and John F. Mulley. "Assessing the utility of the Oxford Nanopore MinION for snake venom gland cDNA sequencing." PeerJ 3 (November 24, 2015): e1441. http://dx.doi.org/10.7717/peerj.1441.
Full textBaloğlu, Bilgenur, Zhewei Chen, Vasco Elbrecht, Thomas Braukmann, Shanna MacDonald, and Dirk Steinke. "A workflow for accurate metabarcoding using nanopore MinION sequencing." Methods in Ecology and Evolution 12, no. 5 (February 18, 2021): 794–804. http://dx.doi.org/10.1111/2041-210x.13561.
Full textPreul, MarkC, Arpan Patel, Evgenii Belykh, EricJ Miller, LaethL George, NikolayL Martirosyan, and VadimA Byvaltsev. "MinION rapid sequencing: Review of potential applications in neurosurgery." Surgical Neurology International 9, no. 1 (2018): 157. http://dx.doi.org/10.4103/sni.sni_55_18.
Full textRames, Emily, and Joanne Macdonald. "Evaluation of MinION nanopore sequencing for rapid enterovirus genotyping." Virus Research 252 (July 2018): 8–12. http://dx.doi.org/10.1016/j.virusres.2018.05.010.
Full textSeah, Adeline, Marisa C. W. Lim, Denise McAloose, Stefan Prost, and Tracie A. Seimon. "MinION-Based DNA Barcoding of Preserved and Non-Invasively Collected Wildlife Samples." Genes 11, no. 4 (April 18, 2020): 445. http://dx.doi.org/10.3390/genes11040445.
Full textLee, Yun Gyeong, Sang Chul Choi, Yuna Kang, Kyeong Min Kim, Chon-Sik Kang, and Changsoo Kim. "Constructing a Reference Genome in a Single Lab: The Possibility to Use Oxford Nanopore Technology." Plants 8, no. 8 (August 6, 2019): 270. http://dx.doi.org/10.3390/plants8080270.
Full textChalapati, Sachin, Conor A. Crosbie, Dixita Limbachiya, and Nimesh Pinnamaneni. "Direct oligonucleotide sequencing with nanopores." Open Research Europe 1 (August 24, 2021): 47. http://dx.doi.org/10.12688/openreseurope.13578.2.
Full textChalapati, Sachin, Conor A. Crosbie, Dixita Limbachiya, and Nimesh Pinnamaneni. "Direct oligonucleotide sequencing with nanopores." Open Research Europe 1 (May 12, 2021): 47. http://dx.doi.org/10.12688/openreseurope.13578.1.
Full textBosch, Thijs, Rogier Schade, Fabian Landman, Leo Schouls, and Karin van Dijk. "A blaVIM-1 positive Aeromonas hydrophila strain in a near-drowning patient: evidence for interspecies plasmid transfer within the patient." Future Microbiology 14, no. 14 (September 2019): 1191–97. http://dx.doi.org/10.2217/fmb-2019-0091.
Full textOstrovski, Hanna, Rodrigo Pelicioni Savegnago, Wen Huang, and Cedric Gondro. "PSXIV-24 Real-time, on-site whole genome sequencing with oxford nanopore technologies’ MinION." Journal of Animal Science 99, Supplement_3 (October 8, 2021): 257–58. http://dx.doi.org/10.1093/jas/skab235.470.
Full textLeggett, Richard M., Cristina Alcon-Giner, Darren Heavens, Shabhonam Caim, Thomas C. Brook, Magdalena Kujawska, Samuel Martin, et al. "Rapid MinION profiling of preterm microbiota and antimicrobial-resistant pathogens." Nature Microbiology 5, no. 3 (December 16, 2019): 430–42. http://dx.doi.org/10.1038/s41564-019-0626-z.
Full textKurokochi, Hiroyuki, Kazutoshi Yoshitake, Ryo Yonezawa, and Shuichi Asakawa. "Simultaneous amplicon analysis of multiple soil samples using MinION sequencing." MethodsX 8 (2021): 101576. http://dx.doi.org/10.1016/j.mex.2021.101576.
Full textWard, Alan C., and Wonyong Kim. "MinION™: New, Long Read, Portable Nucleic Acid Sequencing Device." Journal of Bacteriology and Virology 45, no. 4 (2015): 285. http://dx.doi.org/10.4167/jbv.2015.45.4.285.
Full textLanfear, R., M. Schalamun, D. Kainer, W. Wang, and B. Schwessinger. "MinIONQC: fast and simple quality control for MinION sequencing data." Bioinformatics 35, no. 3 (July 23, 2018): 523–25. http://dx.doi.org/10.1093/bioinformatics/bty654.
Full textLiau, Yusmiati, Simone L. Cree, Simran Maggo, Allison L. Miller, John F. Pearson, Patrick A. Gladding, and Martin A. Kennedy. "A multiplex pharmacogenetics assay using the MinION nanopore sequencing device." Pharmacogenetics and Genomics 29, no. 9 (November 2019): 207–15. http://dx.doi.org/10.1097/fpc.0000000000000385.
Full textCao, Minh Duc, Devika Ganesamoorthy, Matthew A. Cooper, and Lachlan J. M. Coin. "Realtime analysis and visualization of MinION sequencing data with npReader." Bioinformatics 32, no. 5 (November 10, 2015): 764–66. http://dx.doi.org/10.1093/bioinformatics/btv658.
Full textSpatz, Stephen J., Maricarmen Garcia, Sylva Riblet, Teresa A. Ross, Jeremy D. Volkening, Tonya L. Taylor, Taejoong Kim, and Claudio L. Afonso. "MinION sequencing to genotype US strains of infectious laryngotracheitis virus." Avian Pathology 48, no. 3 (March 11, 2019): 255–69. http://dx.doi.org/10.1080/03079457.2019.1579298.
Full textWei, Po-Li, Ching-Sheng Hung, Yi-Wei Kao, Ying-Chin Lin, Cheng-Yang Lee, Tzu-Hao Chang, Ben-Chang Shia, and Jung-Chun Lin. "Characterization of Fecal Microbiota with Clinical Specimen Using Long-Read and Short-Read Sequencing Platform." International Journal of Molecular Sciences 21, no. 19 (September 26, 2020): 7110. http://dx.doi.org/10.3390/ijms21197110.
Full textIrinyi, Laszlo, Yiheng Hu, Minh Thuy Vi Hoang, Lana Pasic, Catriona Halliday, Menuk Jayawardena, Indira Basu, et al. "Long-read sequencing based clinical metagenomics for the detection and confirmation of Pneumocystis jirovecii directly from clinical specimens: A paradigm shift in mycological diagnostics." Medical Mycology 58, no. 5 (November 23, 2019): 650–60. http://dx.doi.org/10.1093/mmy/myz109.
Full textWallace, Amelia D., Thomas A. Sasani, Jordan Swanier, Brooke L. Gates, Jeff Greenland, Brent S. Pedersen, Katherine E. Varley, and Aaron R. Quinlan. "CaBagE: A Cas9-based Background Elimination strategy for targeted, long-read DNA sequencing." PLOS ONE 16, no. 4 (April 8, 2021): e0241253. http://dx.doi.org/10.1371/journal.pone.0241253.
Full textSchuele, Leonard, Hayley Cassidy, Erley Lizarazo, Katrin Strutzberg-Minder, Sabine Schuetze, Sandra Loebert, Claudia Lambrecht, et al. "Assessment of Viral Targeted Sequence Capture Using Nanopore Sequencing Directly from Clinical Samples." Viruses 12, no. 12 (November 27, 2020): 1358. http://dx.doi.org/10.3390/v12121358.
Full textLoman, Nick, Sarah Goodwin, Hans J. Jansen, and Matt Loose. "A disruptive sequencer meets disruptive publishing." F1000Research 4 (October 15, 2015): 1074. http://dx.doi.org/10.12688/f1000research.7229.1.
Full textCrossley, Beate M., Daniel Rejmanek, John Baroch, James B. Stanton, Kelsey T. Young, Mary Lea Killian, Mia K. Torchetti, and Sharon K. Hietala. "Nanopore sequencing as a rapid tool for identification and pathotyping of avian influenza A viruses." Journal of Veterinary Diagnostic Investigation 33, no. 2 (February 6, 2021): 253–60. http://dx.doi.org/10.1177/1040638720984114.
Full textSmith, Carol, Tanya A. Halse, Joseph Shea, Herns Modestil, Randal C. Fowler, Kimberlee A. Musser, Vincent Escuyer, and Pascal Lapierre. "Assessing Nanopore Sequencing for Clinical Diagnostics: a Comparison of Next-Generation Sequencing (NGS) Methods for Mycobacterium tuberculosis." Journal of Clinical Microbiology 59, no. 1 (October 14, 2020): e00583-20. http://dx.doi.org/10.1128/jcm.00583-20.
Full textLeigh, Deborah M., Christopher Schefer, and Carolina Cornejo. "Determining the Suitability of MinION’s Direct RNA and DNA Amplicon Sequencing for Viral Subtype Identification." Viruses 12, no. 8 (July 25, 2020): 801. http://dx.doi.org/10.3390/v12080801.
Full textTaylor, William S., John Pearson, Allison Miller, Sebastian Schmeier, Frank A. Frizelle, and Rachel V. Purcell. "MinION Sequencing of colorectal cancer tumour microbiomes—A comparison with amplicon-based and RNA-Sequencing." PLOS ONE 15, no. 5 (May 20, 2020): e0233170. http://dx.doi.org/10.1371/journal.pone.0233170.
Full textGigante, Scott. "Picopore: A tool for reducing the storage size of Oxford Nanopore Technologies datasets without loss of functionality." F1000Research 6 (March 7, 2017): 227. http://dx.doi.org/10.12688/f1000research.11022.1.
Full textGigante, Scott. "Picopore: A tool for reducing the storage size of Oxford Nanopore Technologies datasets without loss of functionality." F1000Research 6 (April 12, 2017): 227. http://dx.doi.org/10.12688/f1000research.11022.2.
Full textGigante, Scott. "Picopore: A tool for reducing the storage size of Oxford Nanopore Technologies datasets without loss of functionality." F1000Research 6 (September 28, 2017): 227. http://dx.doi.org/10.12688/f1000research.11022.3.
Full textJavaran, Vahid Jalali, Peter Moffett, Pierre Lemoyne, Dong Xu, Charith Raj Adkar-Purushothama, and Mamadou Lamine Fall. "Grapevine Virology in the Third-Generation Sequencing Era: From Virus Detection to Viral Epitranscriptomics." Plants 10, no. 11 (October 31, 2021): 2355. http://dx.doi.org/10.3390/plants10112355.
Full textBrancaccio, Rosario N., Alexis Robitaille, Sankhadeep Dutta, Dana E. Rollison, Massimo Tommasino, and Tarik Gheit. "MinION nanopore sequencing and assembly of a complete human papillomavirus genome." Journal of Virological Methods 294 (August 2021): 114180. http://dx.doi.org/10.1016/j.jviromet.2021.114180.
Full textWei, Shan, and Zev Williams. "Rapid Short-Read Sequencing and Aneuploidy Detection Using MinION Nanopore Technology." Genetics 202, no. 1 (October 23, 2015): 37–44. http://dx.doi.org/10.1534/genetics.115.182311.
Full textEguchi, Hiroshi, Fumika Hotta, and Shunji Kusaka. "Applying Metagenomic Analysis Using Nanopore Sequencer (MinION) for Precision Medicine in Bacterial Keratoconjunctivitis: Comprehensive Validation of Molecular Biological and Conventional Examinations." International Journal of Molecular Sciences 24, no. 3 (January 30, 2023): 2611. http://dx.doi.org/10.3390/ijms24032611.
Full textTan, Shaoyuan, Cheryl M. T. Dvorak, and Michael P. Murtaugh. "Characterization of Emerging Swine Viral Diseases through Oxford Nanopore Sequencing Using Senecavirus A as a Model." Viruses 12, no. 10 (October 7, 2020): 1136. http://dx.doi.org/10.3390/v12101136.
Full textValencia-Valencia, David E., Diana Lopez-Alvarez, Nelson Rivera-Franco, Andres Castillo, Johan S. Piña, Carlos A. Pardo, and Beatriz Parra. "PredictION: a predictive model to establish the performance of Oxford sequencing reads of SARS-CoV-2." PeerJ 10 (November 30, 2022): e14425. http://dx.doi.org/10.7717/peerj.14425.
Full textJain, Miten, John R. Tyson, Matthew Loose, Camilla L. C. Ip, David A. Eccles, Justin O'Grady, Sunir Malla, et al. "MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry." F1000Research 6 (May 31, 2017): 760. http://dx.doi.org/10.12688/f1000research.11354.1.
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