Journal articles on the topic 'Microbial taxonomy'
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Thompson, Cristiane C., Luciane Chimetto, Robert A. Edwards, Jean Swings, Erko Stackebrandt, and Fabiano L. Thompson. "Microbial genomic taxonomy." BMC Genomics 14, no. 1 (2013): 913. http://dx.doi.org/10.1186/1471-2164-14-913.
Full textSanford, Robert A., Karen G. Lloyd, Konstantinos T. Konstantinidis, and Frank E. Löffler. "Microbial Taxonomy Run Amok." Trends in Microbiology 29, no. 5 (May 2021): 394–404. http://dx.doi.org/10.1016/j.tim.2020.12.010.
Full textBowman, John P. "Proteomic applications in microbial identification." Microbiology Australia 32, no. 2 (2011): 77. http://dx.doi.org/10.1071/ma11077.
Full textHÖFLING, José F., Edvaldo A. R. ROSA, Mirian J. BAPTISTA, and Denise M. P. SPOLIDÓRIO. "New Strategies on Molecular Biology Applied to Microbial Systematics." Revista do Instituto de Medicina Tropical de São Paulo 39, no. 6 (November 1997): 345–52. http://dx.doi.org/10.1590/s0036-46651997000600007.
Full textKapili, Bennett J., and Anne E. Dekas. "PPIT: an R package for inferring microbial taxonomy from nifH sequences." Bioinformatics 37, no. 16 (February 13, 2021): 2289–98. http://dx.doi.org/10.1093/bioinformatics/btab100.
Full textMoore, Edward R. B., Sashka A. Mihaylova, Peter Vandamme, Micah I. Krichevsky, and Lenie Dijkshoorn. "Microbial systematics and taxonomy: relevance for a microbial commons." Research in Microbiology 161, no. 6 (July 2010): 430–38. http://dx.doi.org/10.1016/j.resmic.2010.05.007.
Full textTamames, Javier, and Ramon Rosselló-Móra. "On the fitness of microbial taxonomy." Trends in Microbiology 20, no. 11 (November 2012): 514–16. http://dx.doi.org/10.1016/j.tim.2012.08.012.
Full textGreen, J. L., B. J. M. Bohannan, and R. J. Whitaker. "Microbial Biogeography: From Taxonomy to Traits." Science 320, no. 5879 (May 23, 2008): 1039–43. http://dx.doi.org/10.1126/science.1153475.
Full textTsai, Ming-Hsin, Yen-Yi Liu, Von-Wun Soo, and Chih-Chieh Chen. "A New Genome-to-Genome Comparison Approach for Large-Scale Revisiting of Current Microbial Taxonomy." Microorganisms 7, no. 6 (June 3, 2019): 161. http://dx.doi.org/10.3390/microorganisms7060161.
Full textChun, Jongsik, and Fred A. Rainey. "Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea." International Journal of Systematic and Evolutionary Microbiology 64, Pt_2 (February 1, 2014): 316–24. http://dx.doi.org/10.1099/ijs.0.054171-0.
Full textHugenholtz, Philip, Adam Skarshewski, and Donovan H. Parks. "Genome-Based Microbial Taxonomy Coming of Age." Cold Spring Harbor Perspectives in Biology 8, no. 6 (March 17, 2016): a018085. http://dx.doi.org/10.1101/cshperspect.a018085.
Full textSUZUKI, KEN-ICIRO. "New trend in microbial taxonomy. 2. Chemotaxonomy." Kagaku To Seibutsu 26, no. 12 (1988): 858–64. http://dx.doi.org/10.1271/kagakutoseibutsu1962.26.858.
Full textKersters, Karel. "Macromolecular fingerprints and data bases in microbial taxonomy." Fresenius' Journal of Analytical Chemistry 343, no. 1 (1992): 48–49. http://dx.doi.org/10.1007/bf00331994.
Full textKOMAGATA, KAZUO. "New direction of microbial taxonomy. 1 Its trends." Kagaku To Seibutsu 26, no. 10 (1988): 674–81. http://dx.doi.org/10.1271/kagakutoseibutsu1962.26.674.
Full textGladka, G. V., N. V. Borzova, O. V. Gudzenko, V. M. Hovorukha, О. А. Havryliuk, and О. B. Tashyrev. "Polyphase Taxonomy of Antarctic Bacteria." Mikrobiolohichnyi Zhurnal 83, no. 3 (June 17, 2021): 3–13. http://dx.doi.org/10.15407/microbiolj83.03.003.
Full textXing, Haixia, Hongwei Liu, and Jie Pan. "High-Throughput Sequencing of Oral Microbiota in Candida Carriage Sjögren’s Syndrome Patients: A Pilot Cross-Sectional Study." Journal of Clinical Medicine 12, no. 4 (February 16, 2023): 1559. http://dx.doi.org/10.3390/jcm12041559.
Full textWoese, C. R. "Default taxonomy: Ernst Mayr's view of the microbial world." Proceedings of the National Academy of Sciences 95, no. 19 (September 15, 1998): 11043–46. http://dx.doi.org/10.1073/pnas.95.19.11043.
Full textFredrickson, Herbert. "Applications of methods of chemical analysis in microbial taxonomy." Fresenius' Journal of Analytical Chemistry 343, no. 1 (1992): 47–48. http://dx.doi.org/10.1007/bf00331992.
Full textLarsen, Thomas O., Jørn Smedsgaard, Kristian F. Nielsen, Michael E. Hansen, and Jens C. Frisvad. "Phenotypic taxonomy and metabolite profiling in microbial drug discovery." Natural Product Reports 22, no. 6 (2005): 672. http://dx.doi.org/10.1039/b404943h.
Full textMontero, Angel, M. Elias Dueker, and Gregory D. O’Mullan. "Culturable bioaerosols along an urban waterfront are primarily associated with coarse particles." PeerJ 4 (December 22, 2016): e2827. http://dx.doi.org/10.7717/peerj.2827.
Full textChen, Huaihai, Kayan Ma, Yu Huang, Qi Fu, Yingbo Qiu, Jiajiang Lin, Christopher W. Schadt, and Hao Chen. "Lower functional redundancy in “narrow” than “broad” functions in global soil metagenomics." SOIL 8, no. 1 (April 8, 2022): 297–308. http://dx.doi.org/10.5194/soil-8-297-2022.
Full textNadkarni, Mangala, Roy Byun, and Kim-Ly Chhour. "Molecular taxonomy of polymicrobial diseases ? finding novel bacteria not previously considered to be associated with oral diseases." Microbiology Australia 26, no. 3 (2005): 117. http://dx.doi.org/10.1071/ma05117.
Full textBell, Terrence H., Franck O. P. Stefani, Katrina Abram, Julie Champagne, Etienne Yergeau, Mohamed Hijri, and Marc St-Arnaud. "A Diverse Soil Microbiome Degrades More Crude Oil than Specialized Bacterial Assemblages Obtained in Culture." Applied and Environmental Microbiology 82, no. 18 (July 1, 2016): 5530–41. http://dx.doi.org/10.1128/aem.01327-16.
Full textRamesh, Chatragadda, and Laurent Dufossé. "Blue Microbiology—Aquatic Microbial Resources for Sustainable Life on Earth." Microorganisms 11, no. 3 (March 22, 2023): 808. http://dx.doi.org/10.3390/microorganisms11030808.
Full textBolduc, Benjamin, Ho Bin Jang, Guilhem Doulcier, Zhi-Qiang You, Simon Roux, and Matthew B. Sullivan. "vConTACT: an iVirus tool to classify double-stranded DNA viruses that infectArchaeaandBacteria." PeerJ 5 (May 3, 2017): e3243. http://dx.doi.org/10.7717/peerj.3243.
Full textRamírez-Flandes, Salvador, Bernardo González, and Osvaldo Ulloa. "Redox traits characterize the organization of global microbial communities." Proceedings of the National Academy of Sciences 116, no. 9 (February 11, 2019): 3630–35. http://dx.doi.org/10.1073/pnas.1817554116.
Full textVan den Meersche, Karel, Karline Soetaert, and Jack J. Middelburg. "A Bayesian compositional estimator for microbial taxonomy based on biomarkers." Limnology and Oceanography: Methods 6, no. 5 (April 4, 2008): 190–99. http://dx.doi.org/10.4319/lom.2008.6.190.
Full textMeier-Kolthoff, Jan P., Markus Göker, Cathrin Spröer, and Hans-Peter Klenk. "When should a DDH experiment be mandatory in microbial taxonomy?" Archives of Microbiology 195, no. 6 (April 17, 2013): 413–18. http://dx.doi.org/10.1007/s00203-013-0888-4.
Full textThompson, Cristiane C., Gilda R. Amaral, Mariana Campeão, Robert A. Edwards, Martin F. Polz, Bas E. Dutilh, David W. Ussery, Tomoo Sawabe, Jean Swings, and Fabiano L. Thompson. "Microbial taxonomy in the post-genomic era: Rebuilding from scratch?" Archives of Microbiology 197, no. 3 (December 23, 2014): 359–70. http://dx.doi.org/10.1007/s00203-014-1071-2.
Full textRanasinghe, Purnika Damindi, Hiroyasu Satoh, Mamoru Oshiki, Kenshiro Oshima, Wataru Suda, Masahira Hattori, and Takashi Mino. "Revealing microbial community structures in large- and small-scale activated sludge systems by barcoded pyrosequencing of 16S rRNA gene." Water Science and Technology 66, no. 10 (November 1, 2012): 2155–61. http://dx.doi.org/10.2166/wst.2012.428.
Full textMiaow, Katie, Donnabella Lacap-Bugler, and Hannah L. Buckley. "Identifying optimal bioinformatics protocols for aerosol microbial community data." PeerJ 9 (September 30, 2021): e12065. http://dx.doi.org/10.7717/peerj.12065.
Full textZheng, Xiang, Qidi Zhu, Zhijun Zhou, Fangtong Wu, Lixuan Chen, Qianrong Cao, and Fuming Shi. "Gut bacterial communities across 12 Ensifera (Orthoptera) at different feeding habits and its prediction for the insect with contrasting feeding habits." PLOS ONE 16, no. 4 (April 26, 2021): e0250675. http://dx.doi.org/10.1371/journal.pone.0250675.
Full textde la Cuesta-Zuluaga, Jacobo, Ruth E. Ley, and Nicholas D. Youngblut. "Struo: a pipeline for building custom databases for common metagenome profilers." Bioinformatics 36, no. 7 (November 28, 2019): 2314–15. http://dx.doi.org/10.1093/bioinformatics/btz899.
Full textChanson, Anaïs, Corrie S. Moreau, and Christophe Duplais. "Impact of Nesting Mode, Diet, and Taxonomy in Structuring the Associated Microbial Communities of Amazonian Ants." Diversity 15, no. 2 (January 17, 2023): 126. http://dx.doi.org/10.3390/d15020126.
Full textvan Belkum, Alex, Marc Struelens, Arjan de Visser, Henri Verbrugh, and Michel Tibayrenc. "Role of Genomic Typing in Taxonomy, Evolutionary Genetics, and Microbial Epidemiology." Clinical Microbiology Reviews 14, no. 3 (July 1, 2001): 547–60. http://dx.doi.org/10.1128/cmr.14.3.547-560.2001.
Full textIssotta, Francisco, Roberto A. Bobadilla-Fazzini, Ana Moya-Beltrán, Paulo C. Covarrubias, Raquel Quatrini, and Patricio Martinez. "Genetic Basis of Metal Resistance in Acidiphilium sp. DSM 27270 (Yenapatur)." Solid State Phenomena 262 (August 2017): 358–63. http://dx.doi.org/10.4028/www.scientific.net/ssp.262.358.
Full textRemenyik, Judit, László Csige, Péter Dávid, Péter Fauszt, Anna Anita Szilágyi-Rácz, Erzsébet Szőllősi, Zsófia Réka Bacsó, et al. "Exploring the interplay between the core microbiota, physicochemical factors, agrobiochemical cycles in the soil of the historic tokaj mád wine region." PLOS ONE 19, no. 4 (April 16, 2024): e0300563. http://dx.doi.org/10.1371/journal.pone.0300563.
Full textFlores, Roberto, Jianxin Shi, Mitchell H. Gail, Pawel Gajer, Jacques Ravel, and James J. Goedert. "Association of Fecal Microbial Diversity and Taxonomy with Selected Enzymatic Functions." PLoS ONE 7, no. 6 (June 28, 2012): e39745. http://dx.doi.org/10.1371/journal.pone.0039745.
Full textHuse, Susan M., Les Dethlefsen, Julie A. Huber, David Mark Welch, David A. Relman, and Mitchell L. Sogin. "Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing." PLoS Genetics 4, no. 11 (November 21, 2008): e1000255. http://dx.doi.org/10.1371/journal.pgen.1000255.
Full textFenwick, Alexander J., and Karen C. Carroll. "Practical problems when incorporating rapidly changing microbial taxonomy into clinical practice." Clinical Chemistry and Laboratory Medicine (CCLM) 57, no. 9 (August 27, 2019): e238-e240. http://dx.doi.org/10.1515/cclm-2018-1068.
Full textZhou, Jiayin, Wei Qin, Xinda Lu, Yunfeng Yang, David Stahl, Nianzhi Jiao, Jizhong Zhou, Jihua Liu, and Qichao Tu. "The diversity and ecological significance of microbial traits potentially involved in B12 biosynthesis in the global ocean." mLife 2, no. 4 (December 2023): 416–27. http://dx.doi.org/10.1002/mlf2.12095.
Full textMoreno-Gallego, Jaime Leonardo, and Alejandro Reyes. "Informative Regions In Viral Genomes." Viruses 13, no. 6 (June 18, 2021): 1164. http://dx.doi.org/10.3390/v13061164.
Full textJaba, Asma, Fadi Dagher, Amir Mehdi Hamidi Oskouei, Claude Guertin, and Philippe Constant. "Physiological traits and relative abundance of species as explanatory variables of co-occurrence pattern of cultivable bacteria associated with chia seeds." Canadian Journal of Microbiology 65, no. 9 (September 2019): 668–80. http://dx.doi.org/10.1139/cjm-2019-0052.
Full textShaaban, Heba, David A. Westfall, Rawhi Mohammad, David Danko, Daniela Bezdan, Ebrahim Afshinnekoo, Nicola Segata, and Christopher E. Mason. "The Microbe Directory: An annotated, searchable inventory of microbes’ characteristics." Gates Open Research 2 (January 5, 2018): 3. http://dx.doi.org/10.12688/gatesopenres.12772.1.
Full textHou, Fen, Junjie Du, Ye Yuan, Xihui Wu, and Sai Zhao. "Analysis of Microbial Communities in Aged Refuse Based on 16S Sequencing." Sustainability 13, no. 8 (April 7, 2021): 4111. http://dx.doi.org/10.3390/su13084111.
Full textBarka, Essaid Ait, Parul Vatsa, Lisa Sanchez, Nathalie Gaveau-Vaillant, Cedric Jacquard, Hans-Peter Klenk, Christophe Clément, Yder Ouhdouch, and Gilles P. van Wezel. "Taxonomy, Physiology, and Natural Products of Actinobacteria." Microbiology and Molecular Biology Reviews 80, no. 1 (November 25, 2015): 1–43. http://dx.doi.org/10.1128/mmbr.00019-15.
Full textDixit, Kunal. "Benchmarking of 16S rRNA gene databases using known strain sequences." Bioinformation 17, no. 3 (March 31, 2021): 377–91. http://dx.doi.org/10.6026//97320630017377.
Full textDixit, Kunal. "Benchmarking of 16S rRNA gene databases using known strain sequences." Bioinformation 17, no. 3 (March 31, 2021): 377–91. http://dx.doi.org/10.6026/97320630017377.
Full textTsai, Kai-Yen, Deng-Chyang Wu, Wen-Jeng Wu, Jiunn-Wei Wang, Yung-Shun Juan, Ching-Chia Li, Chung-Jung Liu, and Hsiang-Ying Lee. "Exploring the Association between Gut and Urine Microbiota and Prostatic Disease including Benign Prostatic Hyperplasia and Prostate Cancer Using 16S rRNA Sequencing." Biomedicines 10, no. 11 (October 23, 2022): 2676. http://dx.doi.org/10.3390/biomedicines10112676.
Full textJanda, J. Michael, and Sharon L. Abbott. "The Genus Aeromonas: Taxonomy, Pathogenicity, and Infection." Clinical Microbiology Reviews 23, no. 1 (January 2010): 35–73. http://dx.doi.org/10.1128/cmr.00039-09.
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