Relevant bibliographies by topics / Microbial diversity

Academic literature on the topic 'Microbial diversity'

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Published: 4 June 2021
Last updated: 31 July 2024

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Journal articles on the topic "Microbial diversity"

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Dominiecki, Mary E. "Microbial Diversity." American Biology Teacher 67, no. 4 (April 1, 2005): 248. http://dx.doi.org/10.2307/4451833.

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Bull, Alan T., and David J. Hardman. "Microbial diversity." Current Opinion in Biotechnology 2, no. 3 (June 1991): 421–28. http://dx.doi.org/10.1016/s0958-1669(05)80150-8.

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Bull, Alan T. "Microbial diversity." Biodiversity and Conservation 1, no. 4 (1992): 219–20. http://dx.doi.org/10.1007/bf00693759.

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CHRISTINE, MLOT. "Microbial Diversity Unbound." BioScience 54, no. 12 (2004): 1064. http://dx.doi.org/10.1641/0006-3568(2004)054[1064:mdu]2.0.co;2.

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Doulgeraki, Agapi I., and Chrysoula C. Tassou. "Food Microbial Diversity." Microorganisms 9, no. 12 (December 10, 2021): 2556. http://dx.doi.org/10.3390/microorganisms9122556.

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Forster, Samuel C. "Illuminating microbial diversity." Nature Reviews Microbiology 15, no. 10 (August 30, 2017): 578. http://dx.doi.org/10.1038/nrmicro.2017.106.

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Bello, Maria G. Dominguez, Rob Knight, Jack A. Gilbert, and Martin J. Blaser. "Preserving microbial diversity." Science 362, no. 6410 (October 4, 2018): 33–34. http://dx.doi.org/10.1126/science.aau8816.

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Salazar, Guillem, and Shinichi Sunagawa. "Marine microbial diversity." Current Biology 27, no. 11 (June 2017): R489—R494. http://dx.doi.org/10.1016/j.cub.2017.01.017.

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Li, Dongmei, and Philip Hendry. "Microbial diversity in petroleum reservoirs." Microbiology Australia 29, no. 1 (2008): 25. http://dx.doi.org/10.1071/ma08025.

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Buried hydrocarbon deposits, such as liquid petroleum, represent an abundant source of reduced carbon for microbes. It is not surprising therefore that many organisms have adapted to an oily, anaerobic life deep underground, often at high temperatures and pressures, and that those organisms have had, and in some cases continue to have, an effect on the quality and recovery of the earth?s diminishing petroleum resources. There are three key microbial processes of interest to petroleum producers: reservoir souring, hydrocarbon degradation and microbially enhanced oil recovery (MEOR).
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BEARDSLEY, TIMOTHY M. "Metagenomics Reveals Microbial Diversity." BioScience 56, no. 3 (2006): 192. http://dx.doi.org/10.1641/0006-3568(2006)056[0192:mrmd]2.0.co;2.

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Dissertations / Theses on the topic "Microbial diversity"

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Pagaling, Eulyn. "Microbial diversity of Chinese lakes." Thesis, University of Leicester, 2007. http://hdl.handle.net/2381/7662.

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Sanal, Zeynep. "Microbial diversity in evaporite brines." Thesis, University of Leicester, 1999. http://hdl.handle.net/2381/29800.

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Studies of subterranean ancient evaporites in different geographical and geological habitats around the world have revealed that these sites are populated by abundant populations of halophilic eubacteria. The diversity of these isolates was established by phenotypic, chemotaxonomic and phylogenetic analyses. The majority of the isolates were Gram-negatives (90%), the remainder being Gram-positives as judged by several different kinds of analyses. A numerical taxonomy study of the Gram-negative isolates revealed nine distinct phenons, whereas the Gram-positive isolates were represented by only two phenons. Several of the Gram-negative phenons were distinct from known halophiles included for comparison, confirmed by further chemotaxonomic and phylogenetic analysis. It is suggested that at least three new taxa, probably a genus level, are represented by some of these isolates. Other isolates were closely related to known representatives of the Halomonas group, which are widely distributed in a variety of hypersaline environments. A number of rare archaeal isolates from a particular alkaline hypersaline subterranean site were most closely related to the genus Natronobacterium on the basis of chemotaxonomic and phylogenetic analyses. There was less agreement between phenotypic, chemotaxonomic and phylogenetic analysis for representatives of the two Gram-positive phenons, although the centrotype of one phenon was most closely associated with the same genus Marinococcus and that of the other with the Bacillus spectrum.
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Karlinska-Batres, Klementyna. "Microbial diversity of coralline sponges." Diss., Ludwig-Maximilians-Universität München, 2013. http://nbn-resolving.de/urn:nbn:de:bvb:19-179567.

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O'Flaherty, S. M. "Microbial diversity in contaminated soil." Thesis, Cranfield University, 2002. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.274042.

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Xue, Peipei. "Soil Microbial Diversity: Relating Microbial Distributions to Soil Functions." Thesis, The University of Sydney, 2022. https://hdl.handle.net/2123/28830.

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Soil microbial biodiversity is an essential component of the natural ecosystem. Soil microbes work as decomposers contributing to soil nutrient cycling, primary production, and climate regulation. The heterogeneous edaphic properties lead to the diversity of microbial community structuring and functioning. This thesis investigates microbial community distributions and functions through vertical soil profiles, at the landscape level, and along regional transects. Vertically, soil microbial communities were depicted in soil profiles to a depth of 1 m using the concept of genosoils (soil formed and still under natural vegetation) and phenosoils (the same type of soil that has undergone cultivation). Bacteria community distribution in soil profiles differed by soil types but altered by soil forms. At the local scale, factors of land use and soil types on the microbial communities were evaluated in three soil depth layers through a survey across the Hunter Valley area in NSW, Australia. Topsoil microbial communities were generally regulated by land use, while the subsoil microbial communities were shaped by soil type. Additionally, microbial interactions reveal that soil protists regulate the bacterial and fungal diversity. At the regional scale, microbial functions were investigated across two ~1000 km transects which traversed significant temperature and/or rainfall gradients in NSW. Temperature and rainfall were important drivers of soil microbial functional groups. Paired (genosoils and phenosoils) samples showed that agriculture practices led to a significant shift in microbial functional groups related to particulate organic carbon (POC) degradation. Collectively, this thesis studied the factors of depth, soil type, land use, and environment for the underground microbial community, and demonstrated the significant role of soil biodiversity in the soil ecosystem, especially for soil carbon cycling.
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Baumgarte, Susanne. "Microbial diversity of soda lake habitats." [S.l. : s.n.], 2003. http://deposit.ddb.de/cgi-bin/dokserv?idn=968508480.

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Edlund, Anna. "Microbial diversity in Baltic Sea sediments /." Uppsala : Dept. of Microbiology, Swedish University of Agricultural Sciences, 2007. http://epsilon.slu.se/200726.pdf.

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Eren, Ahmet. "Assessing Microbial Diversity Through Nucleotide Variation." ScholarWorks@UNO, 2011. http://scholarworks.uno.edu/td/1307.

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Microbes are the most abundant and most diverse form of life on Earth, constituting the largest portion of the total biomass of the entire planet. They are present in every niche in nature, including very extreme environments, and they govern biogeochemical transformations in ecosystems. The human body is home to a diverse assemblage of microbial species as well. In fact, the number of microbial cells in the gastrointestinal tract, oral cavity, skin, airway passages and urogenital system is approximately an order of magnitude greater than the number of cells that make up the human body itself, and changes in the composition and relative abundance of these microbial communities are highly associated with intestinal and respiratory disorders and diseases of the skin and mucus membranes. In the early 1990's, cultivation-­‐independent methods, especially those based on PCR-­‐amplification and sequences of phylogenetically informative 16S rRNA genes, made it possible to assess the composition of microbial species in natural environments, advances in high-­‐throughput sequencing technologies in recent years have increased sequencing capacity and microbial detection by orders of magnitude. However, the effectiveness of current computational methods available to analyze the vast amounts of sequence data is poor and investigating the diversity within microbial communities remains challenging. In addition to offering an easy-­‐to-­‐use visualization and statistical analysis framework for microbial community analyses, the study described herein aims to present a biologically relevant computational approach for assessing microbial diversity at finer scales of microbial communities through nucleotide variation in 16S rRNA genes.
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Ord, Victoria June. "Modelling microbial diversity in Antarctic soils." Thesis, University of Newcastle upon Tyne, 2014. http://hdl.handle.net/10443/2726.

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Microorganisms play a crucial role in supporting biodiversity, maintaining marine and terrestrial ecosystems at the crux of the nutrient cycle. They are the most diverse and abundant of all living creatures, yet little is understood about their distribution or their intimate relationship with the environment. Antarctic ecosystems are among the most simple on Earth; with basic trophic structuring and the absence of many taxonomic groups, they are also isolated geographically with small patchy areas of nutrient inputs. In this instance, Antarctica becomes a pristine laboratory to examine the ecological paradigms already applied to macro-organisms, to determine if common biological laws govern the distribution of biology globally. The decline of biodiversity with increasing latitude is one such observation in the distribution of macro-organisms. In this study, soil microbial community samples were retrieved over a latitude of 56 to 72 °S across the Antarctic Peninsula region. This is a region of special interest due to a rapidly warming climate with mean temperatures increasing at several times the rate of mean global warming. Sites were biologically and environmentally profiled and data used in a variety of multivariate analysis in order to identify spatial trends and infer mechanisms that may be driving Antarctic terrestrial food webs; or where this was not possible, the areas where focus was needed to increase the information profile to allow this. Results indicate a lack of linear latitudinal gradient in microbial diversity, but do show a correlation with environmental heterogeneity; analysis of site diversity identified a gradient between warmer wetter areas, and areas synonymous with cold desert environment at 66⁰S, supported by both phylum composition and indicative soil chemistry. This was confirmed through principal co-ordinates of neighbours’ matrices analysis (PCNM), with distinct regions of community composition being identified when viewed with respect to environmental variables. Considering an overview of diversity with respect to environmental variables provided additional structure to test hypotheses about nutrient webs through structural equation modelling (SEM), and inferred that areas of patchy nutrient input exist and by means of ornithogenic guano additions promote higher C and N availability, increasing microbial abundance and richness.
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Durbin, Alan Teske Andreas. "Microbial diversity of oligotrophic marine sediments." Chapel Hill, N.C. : University of North Carolina at Chapel Hill, 2009. http://dc.lib.unc.edu/u?/etd,2627.

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Thesis (M.S.)--University of North Carolina at Chapel Hill, 2009.
Title from electronic title page (viewed Oct. 5, 2009). "... in partial fulfillment of the requirements for the degree of Master of Science in the Department of Marine Sciences." Discipline: Marine Sciences; Department/School: Marine Sciences.
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Books on the topic "Microbial diversity"

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Ogunseitan, Oladele, ed. Microbial Diversity. Malden, MA, USA: Blackwell Science Ltd, 2004. http://dx.doi.org/10.1002/9780470750490.

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Ogunseitan, Oladele. Microbial Diversity. New York: John Wiley & Sons, Ltd., 2007.

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Bull, Alan T., ed. Microbial Diversity and Bioprospecting. Washington, DC, USA: ASM Press, 2003. http://dx.doi.org/10.1128/9781555817770.

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Girisham, S., S. Ram Reddy, and M. A. Singara Charya. Microbial diversity: Exploration & bioprospecting. Edited by Kakatiya University. Jodhpur: Scientific Publishers (India), 2012.

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Brown, James W. Principles of microbial diversity. Washington, DC: ASM Press, 2014.

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Sati, S. C., and M. Belwal. Microbes: Diversity and biotechnology. New Delhi: Daya Pub. House, 2012.

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Sharma, Shiwani Guleria, Neeta Raj Sharma, and Mohit Sharma, eds. Microbial Diversity, Interventions and Scope. Singapore: Springer Singapore, 2020. http://dx.doi.org/10.1007/978-981-15-4099-8.

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Caliskan, Mahmut. Genetic diversity in microorganisms. Rijeka, Croatia: InTech, 2012.

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Ogunseitan, Oladele. Microbial diversity: Form and function in prokaryotes. Malden, MA: Blackwell Pub., 2005.

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Colwell, R. R., Usio Simidu, and Kouichi Ohwada, eds. Microbial Diversity in Time and Space. Boston, MA: Springer US, 1996. http://dx.doi.org/10.1007/b102421.

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Book chapters on the topic "Microbial diversity"

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Das, Surajit, and Hirak Ranjan Dash. "Molecular Microbial Diversity." In Microbial Biotechnology- A Laboratory Manual for Bacterial Systems, 125–73. New Delhi: Springer India, 2014. http://dx.doi.org/10.1007/978-81-322-2095-4_4.

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Griffiths, Bryan S., Karl Ritz, and Ronald E. Wheatley. "Relationship between Functional Diversity and Genetic Diversity in Complex Microbial Communities." In Microbial Communities, 1–9. Berlin, Heidelberg: Springer Berlin Heidelberg, 1997. http://dx.doi.org/10.1007/978-3-642-60694-6_1.

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Rainey, Fred A., and Naomi Ward-Rainey. "Prokaryotic Diversity." In Journey to Diverse Microbial Worlds, 29–42. Dordrecht: Springer Netherlands, 2000. http://dx.doi.org/10.1007/978-94-011-4269-4_3.

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Konstantinidis, Konstantinos, and James M. Tiedje. "Microbial Diversity and Genomics." In Microbial Functional Genomics, 21–40. Hoboken, NJ, USA: John Wiley & Sons, Inc., 2005. http://dx.doi.org/10.1002/0471647527.ch2.

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Milkman, Roger. "Horizontal Transfer, Genomic Diversity, and Genomic Differentiation." In Microbial Evolution, 295–318. Washington, DC, USA: ASM Press, 2014. http://dx.doi.org/10.1128/9781555817749.ch19.

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Okoń, Sylwia. "Variability and Diversity in the Microbial Genomes." In Microbial Genetics, 37–51. Boca Raton: CRC Press, 2024. http://dx.doi.org/10.1201/9781003328933-5.

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Jangid, Aditi, and Tulika Prakash. "Microbial Genome Diversity and Microbial Genome Sequencing." In Microbial Genomics in Sustainable Agroecosystems, 175–201. Singapore: Springer Singapore, 2019. http://dx.doi.org/10.1007/978-981-13-8739-5_10.

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Jong, Shung-Chang. "Microbial germplasm." In Biotic Diversity and Germplasm Preservation, Global Imperatives, 241–73. Dordrecht: Springer Netherlands, 1989. http://dx.doi.org/10.1007/978-94-009-2333-1_12.

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Jeffries, Peter. "Microbial Symbioses with Plants." In Microbial Diversity and Bioprospecting, 204–10. Washington, DC, USA: ASM Press, 2014. http://dx.doi.org/10.1128/9781555817770.ch20.

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Hedlund, Brian P., and James T. Staley. "Microbial Endemism and Biogeography." In Microbial Diversity and Bioprospecting, 225–31. Washington, DC, USA: ASM Press, 2014. http://dx.doi.org/10.1128/9781555817770.ch22.

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Conference papers on the topic "Microbial diversity"

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Almatari, Abraham L., Daniel Williams, Elena Spirina, Susan Pfiffner, Karen Lloyd, Elizaveta Rivkina, and Tatiana Vishnivetskaya. "MICROBIAL DIVERSITY OF SIBERIAN PERMAFROST." In 67th Annual Southeastern GSA Section Meeting - 2018. Geological Society of America, 2018. http://dx.doi.org/10.1130/abs/2018se-312997.

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Ma, Boyu. "Research progress on soil microbial diversity technology." In International Conference on Biological Engineering and Medical Science (ICBIOMed2022), edited by Gary Royle and Steven M. Lipkin. SPIE, 2023. http://dx.doi.org/10.1117/12.2669544.

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Travassos, Ana Graziela, Afonso Souza, Iarima Lopes, and Juliana de Lucena. "EDUCATION FOR SUSTAINABILITY IN AMAZONIA: CONTEXTUALIZING MICROBIAL DIVERSITY." In 12th annual International Conference of Education, Research and Innovation. IATED, 2019. http://dx.doi.org/10.21125/iceri.2019.1569.

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Northup, Diana, J. J. M. Hathaway, William C. Briggs, Molly Devlin, D. P. Moser, and Jennifer Blank. "MICROBIAL DIVERSITY OF THE MINERAL-MICROBIAL CONTINUUM IN LAVA CAVES: IMPLICATIONS FOR NITROGEN CYCLING." In GSA Connects 2021 in Portland, Oregon. Geological Society of America, 2021. http://dx.doi.org/10.1130/abs/2021am-370910.

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Oja, Jane, Sakeenah Adenan, Abdel-Fattah Talaat, and Juha Alatalo. "Novel Approach to Study the Diversity of Soil Microbial Communities in Qatar." In Qatar University Annual Research Forum & Exhibition. Qatar University Press, 2020. http://dx.doi.org/10.29117/quarfe.2020.0025.

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A broad diversity of microorganisms can be found in soil, where they are essential for nutrient cycling and energy transfer. Recent high-throughput sequencing methods have greatly advanced our knowledge about how soil, climate and vegetation variables structure the composition of microbial communities in many world regions. However, we are lacking information from several regions in the world, e.g. Middle-East. We have collected soil from 19 different habitat types for studying the diversity and composition of soil microbial communities (both fungi and bacteria) in Qatar and determining which edaphic parameters exert the strongest influences on these communities. Preliminary results indicate that in overall bacteria are more abundant in soil than fungi and few sites have notably higher abundance of these microbes. In addition, we have detected some soil patameters, which tend to have reduced the overall fungal abundance and enhanced the presence of arbuscular mycorrhizal fungi and N-fixing bacteria. More detailed information on the diversity and composition of soil microbial communities is expected from the high-throughput sequenced data.
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Karvonen, Anne, Pirkka V. Kirjavainen, Martin Täubel, Balamuralikrishna Jayaprakash, Rachel I. Adams, Martin Depner, Anne Hyvärinen, Sami Remes, Erika Von Mutius, and Juha Pekkanen. "Indoor microbial diversity and risk of different wheezing phenotypes." In ERS International Congress 2018 abstracts. European Respiratory Society, 2018. http://dx.doi.org/10.1183/13993003.congress-2018.oa3310.

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Aghedo, Ality, Mangala Tawde, and Nazrul I. Khandaker. "MICROBIAL DIVERSITY IN URBAN ENVIRONMENTS: CONCERN FOR ANTIBIOTIC RESISTANCE." In GSA Annual Meeting in Indianapolis, Indiana, USA - 2018. Geological Society of America, 2018. http://dx.doi.org/10.1130/abs/2018am-315997.

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Grim, Sharon L., Judith M. Klatt, Dirk de Beer, Arjun Chennu, Jacob Waldbauer, Gregory Druschel, and Gregory J. Dick. "GEOCHEMICAL CYCLES REFLECT DIVERSITY IN MODERN BENTHIC MICROBIAL MATS." In GSA Annual Meeting in Indianapolis, Indiana, USA - 2018. Geological Society of America, 2018. http://dx.doi.org/10.1130/abs/2018am-324248.

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Ma, Junwen, Yubo Cui, Chengdong Ma, Wanjun Zhang, Zhongwei Zhang, and Ke Zhao. "Investigation of Microbial Diversity in Sludge Treatment Reed Bed." In The International Conference on Biomedical Engineering and Bioinformatics. SCITEPRESS - Science and Technology Publications, 2022. http://dx.doi.org/10.5220/0011180300003443.

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Shi, Xiang, Julia R. de Rezende, and Kenneth Sorbie. "Microbial Ecology Metrics to Assess the Effect of Biocide on Souring Control and Improve Souring Modelling." In SPE International Oilfield Corrosion Conference and Exhibition. SPE, 2021. http://dx.doi.org/10.2118/205037-ms.

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Abstract Reservoir souring is a long-standing issue for the oil and gas industry caused by sulfate-reducing microorganisms (SRM) producing H2S from sulfate ions. In this work, we investigated the connections between the development of souring and the change in three key microbial ecology metrics: the abundance, alpha diversity and community structure of a souring microbiota under the biocide treatment of 100 ppm glutaraldehyde (henceforth referred to as GA). These are studied in sand-packed flow-through bioreactors during and after the biocide treatment using cutting-edge DNA assays. Our study suggests that the rebound of microbial sulfide production after the 100 ppm GA treatment is closely associated with the recovery in microbial abundance and microbial alpha diversity. The study also shows that 100 ppm GA treatment may lead to a measurable shift in the SRM community structure. By comparing the effluent microbial community with the sand microbial community, the study suggests that the change in alpha diversity of the produced water microbial community might be an early warning for the sulfide breakthrough due to souring recurrence in practice. This work explores the relationship between souring and the underlining microbial community behaviours in response to the 100 ppm GA treatment and, to characterise these changes, we propose measurable metrics. A conceptual model is also proposed describing the near-term biological process behind the biocide treatment-recovery cycle in a souring scenario. Finally, this work highlights the potential applications and caveats of harnessing the increasingly available field microbial community data for the improvement of souring modelling and field souring control strategies.
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Reports on the topic "Microbial diversity"

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Leadbetter, Jared. Investigations into the metabolic diversity of microorganisms as part of microbial diversity. Office of Scientific and Technical Information (OSTI), July 2016. http://dx.doi.org/10.2172/1272220.

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Sobecky, Patricia A. Plasmid Diversity and Horizontal Transfer in Marine Sediment Microbial Communities. Fort Belvoir, VA: Defense Technical Information Center, February 2002. http://dx.doi.org/10.21236/ada399348.

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Lu, Zhenmei, Zhili He, Victoria Parisi, Sanghoon Kang, Ye Deng, Joy Van Nostrand, Jason Masoner, Isabelle Cozzarelli, Joseph Suflita, and Jizhong Zhou. GeoChip-based Analysis of Groundwater Microbial Diversity in Norman Landfill. Office of Scientific and Technical Information (OSTI), May 2010. http://dx.doi.org/10.2172/986222.

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Breznak, J., and M. Dworkin. Summer investigations into the metabolic diversity of the microbial world. Office of Scientific and Technical Information (OSTI), May 1993. http://dx.doi.org/10.2172/6467144.

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Tabita, F. R. Summer Workshop: Molecular Basis, Physiology and Diversity of Microbial Adaptation. Office of Scientific and Technical Information (OSTI), May 2002. http://dx.doi.org/10.2172/836588.

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James M. Tiedje, Jizhong Zhou, Anthony Palumbo, Nathaniel Ostrom, and Terence L. Marsh. Noncompetitive microbial diversity patterns in soils: their causes and implications for bioremediation. Office of Scientific and Technical Information (OSTI), July 2007. http://dx.doi.org/10.2172/909524.

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Harwood, Caroline S., and Alfred M. Spormann. Microbial Diversity: A Summer Course at the Marine Biological Laboratory, Woods Hole, MA. Fort Belvoir, VA: Defense Technical Information Center, June 2004. http://dx.doi.org/10.21236/ada421999.

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Gonzalez, Logan, Christopher Baker, Stacey Doherty, and Robyn Barbato. Ecological modeling of microbial community composition under variable temperatures. Engineer Research and Development Center (U.S.), February 2024. http://dx.doi.org/10.21079/11681/48184.

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Soil microorganisms interact with one another within soil pores and respond to external conditions such as temperature. Data on microbial community composition and potential function are commonly generated in studies of soils. However, these data do not provide direct insight into the drivers of community composition and can be difficult to interpret outside the context of ecological theory. In this study, we explore the effect of abiotic environmental variation on microbial species diversity. Using a modified version of the Lotka-Volterra Competition Model with temperature-dependent growth rates, we show that environmentally relevant temperature variability may expand the set of temperature-tolerance phenotype pairs that can coexist as two-species communities compared to constant temperatures. These results highlight a potential role of temperature variation in influencing microbial diversity. This in turn suggests a need to incorporate temperature into predictive models of microbial communities in soil and other environments. We recommend future work to parameterize the model applied in this study with empirical data from environments of interest, and to validate the model predictions using field observations and experimental manipulations.
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Nierzwicki-Bauer, S. A. Microbial communities in subsurface environments: diversity, origin and evolution. Final project technical progress report. Office of Scientific and Technical Information (OSTI), July 1999. http://dx.doi.org/10.2172/764617.

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Konisky, J. International Symposium on Topics in Microbial Diversity, Metabolism, and Physiology. Final report, May 22--23, 1992. Office of Scientific and Technical Information (OSTI), July 1993. http://dx.doi.org/10.2172/10158099.

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