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1

Singh, Raghvendra Pratap, Geetanjali Manchanda, Kaushik Bhattacharjee, and Hovik Panosyan, eds. Microbes in Microbial Communities. Singapore: Springer Singapore, 2021. http://dx.doi.org/10.1007/978-981-16-5617-0.

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2

Ahmad, Iqbal, Farah Ahmad, and John Pichtel, eds. Microbes and Microbial Technology. New York, NY: Springer New York, 2011. http://dx.doi.org/10.1007/978-1-4419-7931-5.

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3

Brahma, Nitosh Kumar. Microbes, microbial engineering, and technology. Hauppauge, N.Y: Nova Science Publishers, 2010.

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4

Hoagland, Robert E., ed. Microbes and Microbial Products as Herbicides. Washington, DC: American Chemical Society, 1990. http://dx.doi.org/10.1021/bk-1990-0439.

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5

E, Hoagland Robert, American Chemical Society. Division of Agrochemicals., and American Chemical Society Meeting, eds. Microbes and microbial products as herbicides. Washington, DC: American Chemical Society, 1990.

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6

Inamuddin, Mohd Imran Ahamed, and Ram Prasad, eds. Application of Microbes in Environmental and Microbial Biotechnology. Singapore: Springer Singapore, 2022. http://dx.doi.org/10.1007/978-981-16-2225-0.

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7

Aḥmad, Iqbāl. Microbes and Microbial Technology: Agricultural and Environmental Applications. New York, NY: Springer Science+Business Media, LLC, 2011.

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8

P, Mobley David, ed. Plastics from microbes: Microbial synthesis of polymers and polymer precursors. Munich: Hanser Publishers, 1994.

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9

1957-, Dilek Yildirim, Furnes Harald, and Muehlenbachs Karlis, eds. Links between geological processes, microbial activities & evolution of life: Microbes and geology. [Dordrecht]: Springer, 2008.

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10

P, Nakas James, and Hagedorn Charles, eds. Biotechnology of plant-microbe interactions. New York: McGraw-Hill, 1990.

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11

Shekhar, Nautiyal Chandra, and Dion Patrice 1953-, eds. Molecular mechanisms of plant and microbe coexistence. Berlin: Springer, 2008.

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12

Shinya, Hiromi. The microbe factor using your body's enzymes & microbes to protect your health. San Francisco: Millichap Books, 2010.

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13

H, Andrews John, Hirano Susan S, and International Symposium on the Microbiology of the Phyllosphere (5th : 1990 : Madison, Wis.), eds. Microbial ecology of leaves. New York: Springer-Verlag, 1991.

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14

Boekestein, Abraham, and Miodrag K. Pavićević, eds. Electron Microbeam Analysis. Vienna: Springer Vienna, 1992. http://dx.doi.org/10.1007/978-3-7091-6679-6.

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15

Bisen, Prakash S., Mousumi Debnath, and Godavarthi B. K. S. Prasad. Microbes. Hoboken, NJ, USA: John Wiley & Sons, Inc., 2012. http://dx.doi.org/10.1002/9781118311912.

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16

John, Lammert. Microbes. Vero Beach, FL., U.S.A: Rourke Publications, 1992.

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17

Benoit, Daniele, Jean-Francois Bresse, Luc Van’t dack, Helmut Werner, and Johann Wernisch, eds. Microbeam and Nanobeam Analysis. Vienna: Springer Vienna, 1996. http://dx.doi.org/10.1007/978-3-7091-6555-3.

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18

Ghannoum, Mahmoud, Matthew Parsek, Marvin Whiteley, and Pranab K. Mukherjee, eds. Microbial Biofilms. Washington, DC, USA: ASM Press, 2015. http://dx.doi.org/10.1128/9781555817466.

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19

Kanti, Atit, Endang Sukara, Harmastini Sukiman, Puspita Lisdiyanti, Ruth Melliawati, Shanti Ratnakomala, Sylvia J. R. Lekatompessy, Trisanti Anindyawati, Yantyati Widyastuti, and Yopi Yopi. Exploring Indonesian Microbial Genetic Resources for Industrial Application. LIPI PRESS, 2016. http://dx.doi.org/10.14203/press.291.

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Indonesia is a mega biodiversity country consisting of various types of animals and plants, including genetic microbial resources. However, the exploration on microbes has not been yet extensively explored. This book highlights some important findings and achievements carried out by the microbiologists in LIPI on the sustainable use of Indonesian microbial genetic resources. Through this book, some successful processes of identification, characterization, and preservation in culture collections of Indonesian microbial genetic resources have been showed vividly. Some of potential microbes useful for human welfare are also described in this book, including their utilization for food, feed, health, and bioenergy. It is expected that this book can be a useful reference for those who are interested in the importance of microbial genetic resources for the prosperity of the nation as it revealed some significant findings on microbes, which have been isolated from various sources in Indonesia.
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20

Hoagland, Robert E. Microbes and Microbial Products As Herbicides. An American Chemical Society Publication, 1998.

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21

Kirchman, David L. Introduction. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.003.0001.

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The goal of this chapter is to introduce the field of microbial ecology and some terms used in the rest of the book. Microbial ecology, which is the study of microbes in natural environments, is important for several reasons. Although most are beneficial, some microbes cause diseases of higher plants and animals in aquatic environments and on land. Microbes are also important because they are directly or indirectly responsible for the food we eat. They degrade pesticides and other pollutants contaminating natural environments. Finally, they are important in another “pollution” problem: the increase in greenhouse gases such as carbon dioxide and methane in the atmosphere. Because microbes are crucial for many biogeochemical processes, the field of microbial ecology is crucial for understanding the effect of greenhouse gases on the biosphere and for predicting the impact of climate change on aquatic and terrestrial ecosystems. Even if the problem of climate change were solved, microbes would be fascinating to study because of the weird and wonderful things they do. The chapter ends by pointing out the difficulties in isolating and cultivating microbes in the laboratory. In many environments, less than one percent of all bacteria and other microbes can be grown in the laboratory. The cultivation problem has many ramifications for identifying especially viruses, bacteria, and archaea in natural environments, and for connecting up taxonomic information with biogeochemical processes.
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22

The Microbial Challenge: Human-Microbe Interactions. ASM Press, 2002.

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23

Microbes and Microbial Biotechnology for Green Remediation. Elsevier, 2022. http://dx.doi.org/10.1016/c2020-0-02986-5.

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24

Malik, Junaid Ahmad. Microbes and Microbial Biotechnology for Green Remediation. Elsevier, 2022.

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25

Malik, Junaid Ahmad. Microbes and Microbial Biotechnology for Green Remediation. Elsevier, 2022.

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26

Ahmad. MICROBES AND MICROBIAL TECHNOLOGY: AGRICULTURAL AND ENVIRONMENTAL APPLICATIONS. Springer /MBS, 2019.

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27

Prasad, Ram, and Mohd Imran Ahamed. Application of Microbes in Environmental and Microbial Biotechnology. Springer Singapore Pte. Limited, 2021.

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28

Pichtel, John, Iqbal Ahmad, and Farah Ahmad. Microbes and Microbial Technology: Agricultural and Environmental Applications. Springer, 2014.

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29

Bose, Tanima. Microbes, Microbial Metabolism and Mucosal Immunity: An Overview. Elsevier Science & Technology Books, 2023.

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30

Singh, Raghvendra Pratap, Hovik Panosyan, Geetanjali Manchanda, and Kaushik Bhattacharjee. Microbes in Microbial Communities: Ecological and Applied Perspectives. Springer Singapore Pte. Limited, 2021.

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31

Application of Microbes in Environmental and Microbial Biotechnology. Springer, 2023.

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32

Microbes in Microbial Communities: Ecological and Applied Perspectives. Springer, 2022.

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33

Myer, Phillip, and Liesel Schneider, eds. Tiny Microbes, Big Yields: The Future of Food and Agriculture. Frontiers Media SA, 2022. http://dx.doi.org/10.3389/978-2-88974-951-5.

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Our world is made up of countless tiny living beings. There are so many of them, that they make up the largest number of living beings on the planet. These microscopic organisms, called microorganisms or microbes, cannot be seen with the naked eye. We encounter them daily and we interact with them through the air we breathe, the food we eat, and the natural processes within our own organ systems. Microbes have evolved with life on Earth to be important for its survival. They act as food for plants and animals, help humans and animals digest food, break down dead material, and even serve as guardians against bad microbes. Whether we realize it or not, humans rely on microbes to help make the food we eat every day, and understanding how they work helps us to improve our foods and agriculture. It is amazing to examine how well microorganisms are incorporated into the food we eat, the plants we grow, and the animals we raise. Microbes help ferment foods to make products like cheeses and breads. They work in the soil to provide nitrogen to plants which helps them grow better. Special microbes live in the stomachs of cattle and sheep that allow them to digest grasses that humans cannot eat. Additionally, the energy produced from the microbial digestion of these grasses helps produce meat and milk. However, as with everything, we must take the good with the bad. Although many microbes are helpful, some are harmful and can cause illness. These “bad bugs” must be monitored to ensure they do not enter our food supply. The challenge is to interpret the ways the microbes are positively and negatively impacting food and agriculture and to untangle their complex network to promote improved and more efficient approaches to feed the world. This collection of articles focuses on understanding more about microbial communities, biodiversity, and their relationships with food and agriculture. This includes, but is not limited to, food and animal production, animal health, food safety, crop safety and production, and agricultural sustainability through microbial-based approaches. What we can learn about these tiny living beings can help provide safe, nutritious, and sustainable food to a growing human global population.
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34

Karnwal, Arun, and Abdel Rahman Mohammad Said Al-Tawaha, eds. Environmental Microbiology: Advanced Research and Multidisciplinary Applications. BENTHAM SCIENCE PUBLISHERS, 2022. http://dx.doi.org/10.2174/97816810895841220101.

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Environmental Microbiology: Advanced Research and Multidisciplinary Applications focus on the current research on microorganisms in the environment. Contributions in the volume cover several aspects of applied microbial research, basic research on microbial ecology and molecular genetics. The reader will find a collection of topics with theoretical and practical value, allowing them to connect environmental microbiology to a variety of subjects in life sciences, ecology, and environmental science topics. Advanced topics including biogeochemical cycling, microbial biosensors, bioremediation, application of microbial biofilms in bioremediation, application of microbial surfactants, microbes for mining and metallurgical operations, valorization of waste, and biodegradation of aromatic waste, microbial communication, nutrient cycling and biotransformation are also covered. The content is designed for advanced undergraduate students, graduate students, and environmental professionals, with a comprehensive and up-to-date discussion of environmental microbiology as a discipline that has greatly expanded in scope and interest over the past several decades.
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35

de los Reyes-Gavilán, Clara G., and Nuria Salazar, eds. Insights into Microbe-Microbe Interactions in Human Microbial Ecosystems: Strategies to be Competitive. Frontiers Media SA, 2016. http://dx.doi.org/10.3389/978-2-88945-052-7.

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36

Singh, Raghvendra Pratap, Geetanjali Manchanda, Indresh Kumar Maurya, and Yunlin Wei. Microbial Versatility in Varied Environments: Microbes in Sensitive Environments. Springer, 2020.

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37

Singh, Raghvendra Pratap, Geetanjali Manchanda, Indresh Kumar Maurya, and Yunlin Wei. Microbial Versatility in Varied Environments: Microbes in Sensitive Environments. Springer Singapore Pte. Limited, 2021.

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38

Sirová, Dagmara, Jiří Bárta, Jakub Borovec, and Jaroslav Vrba. The Utricularia-associated microbiome: composition, function, and ecology. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198779841.003.0025.

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This chapter reviews current advances regarding plant–microbe interactions in aquatic Utricularia. New findings on the composition and function of trap commensals, based mainly on the advances in molecular methods, are presented in the context of the ecological role of Utricularia-associated microorganisms. Bacteria, fungi, algae, and protozoa colonize the Utricularia trap lumen and form diverse, interactive communities. The involvement of these microbial food webs in the regeneration of nutrients from complex organic matter is explained and their potential contribution to the nutrient acquisition in aquatic Utricularia is discussed. The Utricularia–commensal system is suggested to be a suitable model system for studying plant-microbe and microbe-microbe interactions and related ecological questions.
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39

EDITOR, KATHY FRAME SENIOR. MEET THE MICROBES THROUTH THE MICROBEWORLD ACTIVITIES WITH MICROBE THE MAGNIFICENT & MIGHTY MICROBE. TEXAS INSTRUMENTS, 1999.

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40

Kirchman, David L. Community structure of microbes in natural environments. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.003.0004.

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Community structure refers to the taxonomic types of microbes and their relative abundance in an environment. This chapter focuses on bacteria with a few words about fungi; protists and viruses are discussed in Chapters 9 and 10. Traditional methods for identifying microbes rely on biochemical testing of phenotype observable in the laboratory. Even for cultivated microbes and larger organisms, the traditional, phenotype approach has been replaced by comparing sequences of specific genes, those for 16S rRNA (archaea and bacteria) or 18S rRNA (microbial eukaryotes). Cultivation-independent approaches based on 16S rRNA gene sequencing have revealed that natural microbial communities have a few abundant types and many rare ones. These organisms differ substantially from those that can be grown in the laboratory using cultivation-dependent approaches. The abundant types of microbes found in soils, freshwater lakes, and oceans all differ. Once thought to be confined to extreme habitats, Archaea are now known to occur everywhere, but are particularly abundant in the deep ocean, where they make up as much as 50% of the total microbial abundance. Dispersal of bacteria and other small microbes is thought to be easy, leading to the Bass Becking hypothesis that “everything is everywhere, but the environment selects.” Among several factors known to affect community structure, salinity and temperature are very important, as is pH especially in soils. In addition to bottom-up factors, both top-down factors, grazing and viral lysis, also shape community structure. According to the Kill the Winner hypothesis, viruses select for fast-growing types, allowing slower growing defensive specialists to survive. Cultivation-independent approaches indicate that fungi are more diverse than previously appreciated, but they are less diverse than bacteria, especially in aquatic habitats. The community structure of fungi is affected by many of the same factors shaping bacterial community structure, but the dispersal of fungi is more limited than that of bacteria. The chapter ends with a discussion about the relationship between community structure and biogeochemical processes. The value of community structure information varies with the process and the degree of metabolic redundancy among the community members for the process.
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41

Lugtenberg, Ben. Principles of Plant-Microbe Interactions: Microbes for Sustainable Agriculture. Springer, 2014.

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42

Lugtenberg, Ben. Principles of Plant-Microbe Interactions: Microbes for Sustainable Agriculture. Springer, 2016.

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43

Lugtenberg, Ben. Principles of Plant-Microbe Interactions: Microbes for Sustainable Agriculture. Springer, 2014.

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44

Money, Nicholas P. 2. How microbes operate. Oxford University Press, 2014. http://dx.doi.org/10.1093/actrade/9780199681686.003.0002.

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‘How microbes operate’ considers the mechanisms that sustain prokaryotic and eukaryotic microorganisms. All active cells must be supplied with water and an energy source. Absorption of water is essential, even in extremely dry or salty habitats, because the enzymes that catalyse biochemical reactions in cells do not work unless they are hydrated. Sunlight powers the metabolism of photosynthetic microbes and others glean chemical energy from a plenitude of terrestrial sources. Extremes in temperature, acidity, and other environmental variables place additional constraints upon microbial life, but bacteria, archaea, and eukaryotic microorganisms thrive in most places where liquid water is available.
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45

Mobley, David P. Plastics from Microbes: Microbial Synthesis of Polymers and Polymer Precursors. Hanser Gardner Publications, 1994.

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46

Kirchman, David L. Processes in Microbial Ecology. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.001.0001.

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Processes in Microbial Ecology discusses the major processes carried out by viruses, bacteria, fungi, protozoa, and other protists—the microbes—in freshwater, marine, and terrestrial ecosystems. The book shows how advances in genomic and other molecular approaches have uncovered the incredible diversity of microbes in natural environments and unraveled complex biogeochemical processes carried out by uncultivated bacteria, archaea, and fungi. The microbes and biogeochemical processes are affected by ecological interactions, including competition for limiting nutrients, viral lysis, and predation by protists in soils and aquatic habitats. The book links up processes occurring at the micron scale to events happening at the global scale, including the carbon cycle and its connection to climate change issues. The book ends with a chapter devoted to symbiosis and other relationships between microbes and large organisms, which have large impacts not only on biogeochemical cycles, but also on the ecology and evolution of large organisms, including Homo sapiens.
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47

Kirchman, David L. Elements, biochemicals, and structures of microbes. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.003.0002.

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Microbiologists focus on the basic biochemical make-up of microbes, such as relative amounts of protein, RNA, and DNA in cells, while ecologists and biogeochemists use elemental ratios, most notably, the ratio of carbon to nitrogen (C:N), to explore biogeochemical processes and to connect up the carbon cycle with the cycle of other elements. Microbial ecologists make use of both types of data and approaches. This chapter combines both and reviews all things, from elements to macromolecular structures, that make up bacteria and other microbes. The most commonly used elemental ratio was discovered by Alfred Redfield who concluded that microbes have a huge impact on the chemistry of the oceans because of the similarity in nitrogen-to-phosphorus ratios for organisms and nitrate-to-phosphate ratios in the deep oceans. Although statistically different, the C:N ratios in soil microbes are remarkably similar to the ratios of aquatic microbes. The chapter moves on to discussing the macromolecular composition of bacteria and other microbes. This composition gives insights into the growth state of microbes in nature. Geochemists use specific compounds, “biomarkers”, to trace sources of organic material in ecosystems. The last section of the chapter is a review of extracellular polymers, pili, and flagella, which serve a variety of functions, from propelling microbes around to keeping them stuck in one place.
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48

Cultures Magazine. The Microbial World: A Coloring Book of Microbe-Inspired Postcards. American Society of Microbiology, 2017. http://dx.doi.org/10.1128/9781683670315.

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49

Kirchman, David L. The physical-chemical environment of microbes. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.003.0003.

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Many physical-chemical properties affecting microbes are familiar to ecologists examining large organisms in our visible world. This chapter starts by reviewing the basics of these properties, such as the importance of water for microbes in soils and temperature in all environments. Another important property, pH, has direct effects on organisms and indirect effects via how hydrogen ions determine the chemical form of key molecules and compounds in nature. Oxygen content is also critical, as it is essential to the survival of all but a few eukaryotes. Light is used as an energy source by phototrophs, but it can have deleterious effects on microbes. In addition to these familiar factors, the small size of microbes sets limits on their physical world. Microbes are said to live in a “low Reynolds number environment”. When the Reynolds number is smaller than about one, viscous forces dominate over inertial forces. For a macroscopic organism like us, moving in a low Reynolds number environment would seem like swimming in molasses. Microbes in both aquatic and terrestrial habitats live in a low Reynolds number world, one of many similarities between the two environments at the microbial scale. Most notably, even soil microbes live in an aqueous world, albeit a thin film of water on soil particles. But the soil environment is much more heterogeneous than water, with profound consequences for biogeochemical processes and interactions among microbes. The chapter ends with a discussion of how the physical-chemical environment of microbes in biofilms is quite different from that of free-living organisms.
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50

Money, Nicholas P. 6. Microbial ecology and evolution. Oxford University Press, 2014. http://dx.doi.org/10.1093/actrade/9780199681686.003.0006.

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Many ecosystems are wholly microbial and the activities of microorganisms provide the biochemical foundation for plant and animal life. ‘Microbial ecology and evolution’ describes how plants depend upon the complex redox reactions of microbes that fertilize the soil by fixing nitrogen, converting nitrites to nitrates, enhancing the availability of phosphorus and trace elements, and recycling organic matter. Eukaryotic microorganisms are similarly plentiful and essential for the sustenance of plants and animals. Bacteria, archaea, and single-celled eukaryotes are the masters of the marine environment, harnessing the energy that supports complex ecological interactions between aquatic animals. Bacteria and archaea form 90% of the ocean biomass and surface waters are filled with eukaryotic algae.
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