Journal articles on the topic 'Meta-transcriptomics'
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Caldas, José, and Susana Vinga. "Global Meta-Analysis of Transcriptomics Studies." PLoS ONE 9, no. 2 (February 26, 2014): e89318. http://dx.doi.org/10.1371/journal.pone.0089318.
Full textCobbin, Joanna CA, Justine Charon, Erin Harvey, Edward C. Holmes, and Jackie E. Mahar. "Current challenges to virus discovery by meta-transcriptomics." Current Opinion in Virology 51 (December 2021): 48–55. http://dx.doi.org/10.1016/j.coviro.2021.09.007.
Full textShi, Mang, Yong-Zhen Zhang, and Edward C. Holmes. "Meta-transcriptomics and the evolutionary biology of RNA viruses." Virus Research 243 (January 2018): 83–90. http://dx.doi.org/10.1016/j.virusres.2017.10.016.
Full textFung, Wing Tung, Joseph T. Wu, Wai Man Mandy Chan, Henry H. Chan, and Herbert Pang. "Pathway‐based meta‐analysis for partially paired transcriptomics analysis." Research Synthesis Methods 11, no. 1 (November 10, 2019): 123–33. http://dx.doi.org/10.1002/jrsm.1381.
Full textWittekindt, Nicola E., Abinash Padhi, Stephan C. Schuster, Ji Qi, Fangqing Zhao, Lynn P. Tomsho, Lindsay R. Kasson, Michael Packard, Paul Cross, and Mary Poss. "Nodeomics: Pathogen Detection in Vertebrate Lymph Nodes Using Meta-Transcriptomics." PLoS ONE 5, no. 10 (October 18, 2010): e13432. http://dx.doi.org/10.1371/journal.pone.0013432.
Full textGust, Kurt A., Fares Z. Najar, Tanwir Habib, Guilherme R. Lotufo, Alan M. Piggot, Bruce W. Fouke, Jennifer G. Laird, et al. "Coral-zooxanthellae meta-transcriptomics reveals integrated response to pollutant stress." BMC Genomics 15, no. 1 (2014): 591. http://dx.doi.org/10.1186/1471-2164-15-591.
Full textBrown, Laurence A., and Stuart N. Peirson. "Improving Reproducibility and Candidate Selection in Transcriptomics Using Meta-analysis." Journal of Experimental Neuroscience 12 (January 2018): 117906951875629. http://dx.doi.org/10.1177/1179069518756296.
Full textChialva, Matteo, Stefano Ghignone, Mara Novero, Wael N. Hozzein, Luisa Lanfranco, and Paola Bonfante. "Tomato RNA-seq Data Mining Reveals the Taxonomic and Functional Diversity of Root-Associated Microbiota." Microorganisms 8, no. 1 (December 24, 2019): 38. http://dx.doi.org/10.3390/microorganisms8010038.
Full textDelhomme, Nicolas, Görel Sundström, Neda Zamani, Henrik Lantz, Yao-Cheng Lin, Torgeir R. Hvidsten, Marc P. Höppner, et al. "Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies)." PLOS ONE 10, no. 9 (September 28, 2015): e0139080. http://dx.doi.org/10.1371/journal.pone.0139080.
Full textPorter, Ashleigh F., Mang Shi, John-Sebastian Eden, Yong-Zhen Zhang, and Edward C. Holmes. "Diversity and Evolution of Novel Invertebrate DNA Viruses Revealed by Meta-Transcriptomics." Viruses 11, no. 12 (November 25, 2019): 1092. http://dx.doi.org/10.3390/v11121092.
Full textWang, Hong-Qiang, Chun-Hou Zheng, and Xing-Ming Zhao. "jNMFMA: a joint non-negative matrix factorization meta-analysis of transcriptomics data." Bioinformatics 31, no. 4 (October 16, 2014): 572–80. http://dx.doi.org/10.1093/bioinformatics/btu679.
Full textVoutetakis, Konstantinos, Aristotelis Chatziioannou, Efstathios S. Gonos, and Ioannis P. Trougakos. "Comparative Meta-Analysis of Transcriptomics Data during Cellular Senescence andIn VivoTissue Ageing." Oxidative Medicine and Cellular Longevity 2015 (2015): 1–17. http://dx.doi.org/10.1155/2015/732914.
Full textDovrou, Aikaterini, Ekaterini Bei, Stelios Sfakianakis, Kostas Marias, Nickolas Papanikolaou, and Michalis Zervakis. "Synergies of Radiomics and Transcriptomics in Lung Cancer Diagnosis: A Pilot Study." Diagnostics 13, no. 4 (February 15, 2023): 738. http://dx.doi.org/10.3390/diagnostics13040738.
Full textVillatoro-García, Juan Antonio, Jordi Martorell-Marugán, Daniel Toro-Domínguez, Yolanda Román-Montoya, Pedro Femia, and Pedro Carmona-Sáez. "DExMA: An R Package for Performing Gene Expression Meta-Analysis with Missing Genes." Mathematics 10, no. 18 (September 17, 2022): 3376. http://dx.doi.org/10.3390/math10183376.
Full textSoul, Jamie, Tim E. Hardingham, Ray P. Boot-Handford, and Jean-Marc Schwartz. "SkeletalVis: an exploration and meta-analysis data portal of cross-species skeletal transcriptomics data." Bioinformatics 35, no. 13 (November 27, 2018): 2283–90. http://dx.doi.org/10.1093/bioinformatics/bty947.
Full textCoelho, Antonio Victor Campos, Rossella Gratton, João Paulo Britto de Melo, José Leandro Andrade-Santos, Rafael Lima Guimarães, Sergio Crovella, Paola Maura Tricarico, and Lucas André Cavalcanti Brandão. "HIV-1 Infection Transcriptomics: Meta-Analysis of CD4+ T Cells Gene Expression Profiles." Viruses 13, no. 2 (February 4, 2021): 244. http://dx.doi.org/10.3390/v13020244.
Full textXue, Yaxin, Anders Lanzén, and Inge Jonassen. "Reconstructing ribosomal genes from large scale total RNA meta-transcriptomic data." Bioinformatics 36, no. 11 (March 13, 2020): 3365–71. http://dx.doi.org/10.1093/bioinformatics/btaa177.
Full textMassimino, Luca, Luigi Antonio Lamparelli, Yashar Houshyar, Silvia D’Alessio, Laurent Peyrin-Biroulet, Stefania Vetrano, Silvio Danese, and Federica Ungaro. "The Inflammatory Bowel Disease Transcriptome and Metatranscriptome Meta-Analysis (IBD TaMMA) framework." Nature Computational Science 1, no. 8 (August 2021): 511–15. http://dx.doi.org/10.1038/s43588-021-00114-y.
Full textEvgeniou, Michail, Juan Manuel Sacnun, Klaus Kratochwill, and Paul Perco. "A Meta-Analysis of Human Transcriptomics Data in the Context of Peritoneal Dialysis Identifies Novel Receptor-Ligand Interactions as Potential Therapeutic Targets." International Journal of Molecular Sciences 22, no. 24 (December 10, 2021): 13277. http://dx.doi.org/10.3390/ijms222413277.
Full textOrtiz-Baez, Ayda Susana, John-Sebastian Eden, Craig Moritz, and Edward C. Holmes. "A Divergent Articulavirus in an Australian Gecko Identified Using Meta-Transcriptomics and Protein Structure Comparisons." Viruses 12, no. 6 (June 4, 2020): 613. http://dx.doi.org/10.3390/v12060613.
Full textAkrioti, Elissavet, Timokratis Karamitros, Panagiotis Gkaravelas, Georgia Kouroupi, Rebecca Matsas, and Era Taoufik. "Early Signs of Molecular Defects in iPSC-Derived Neural Stems Cells from Patients with Familial Parkinson’s Disease." Biomolecules 12, no. 7 (June 23, 2022): 876. http://dx.doi.org/10.3390/biom12070876.
Full textKeskus, Ayse Gokce, Melike Tombaz, Burcin Irem Arici, Fatma Betul Dincaslan, Afshan Nabi, Huma Shehwana, and Ozlen Konu. "Functional analysis of co-expression networks of zebrafish ace2 reveals enrichment of pathways associated with development and disease." Genome 65, no. 2 (February 2022): 57–74. http://dx.doi.org/10.1139/gen-2021-0033.
Full textWille, Michelle, Hans Netter, Margaret Littlejohn, Lilly Yuen, Mang Shi, John-Sebastian Eden, Marcel Klaassen, Edward Holmes, and Aeron Hurt. "A Divergent Hepatitis D-Like Agent in Birds." Viruses 10, no. 12 (December 17, 2018): 720. http://dx.doi.org/10.3390/v10120720.
Full textChung, Matthew, Preston J. Basting, Rayanna S. Patkus, Alexandra Grote, Ashley N. Luck, Elodie Ghedin, Barton E. Slatko, et al. "A Meta-Analysis of Wolbachia Transcriptomics Reveals a Stage-Specific Wolbachia Transcriptional Response Shared Across Different Hosts." G3 Genes|Genomes|Genetics 10, no. 9 (September 1, 2020): 3243–60. http://dx.doi.org/10.1534/g3.120.401534.
Full textNewton, Richard, and Lorenz Wernisch. "A Meta-Analysis of Multiple Matched Copy Number and Transcriptomics Data Sets for Inferring Gene Regulatory Relationships." PLoS ONE 9, no. 8 (August 22, 2014): e105522. http://dx.doi.org/10.1371/journal.pone.0105522.
Full textCho, Sangkyun, Jerome Irianto, and Dennis E. Discher. "Mechanosensing by the nucleus: From pathways to scaling relationships." Journal of Cell Biology 216, no. 2 (January 2, 2017): 305–15. http://dx.doi.org/10.1083/jcb.201610042.
Full textRue-Albrecht, Kevin, Federico Marini, Charlotte Soneson, and Aaron T. L. Lun. "iSEE: Interactive SummarizedExperiment Explorer." F1000Research 7 (June 14, 2018): 741. http://dx.doi.org/10.12688/f1000research.14966.1.
Full textMishra, Aastha, Shankar Chanchal, and Mohammad Z. Ashraf. "Host–Viral Interactions Revealed among Shared Transcriptomics Signatures of ARDS and Thrombosis: A Clue into COVID-19 Pathogenesis." TH Open 04, no. 04 (October 2020): e403-e412. http://dx.doi.org/10.1055/s-0040-1721706.
Full textVahlensieck, Christian, Cora S. Thiel, Jan Adelmann, Beatrice A. Lauber, Jennifer Polzer, and Oliver Ullrich. "Rapid Transient Transcriptional Adaptation to Hypergravity in Jurkat T Cells Revealed by Comparative Analysis of Microarray and RNA-Seq Data." International Journal of Molecular Sciences 22, no. 16 (August 6, 2021): 8451. http://dx.doi.org/10.3390/ijms22168451.
Full textTurnbull, Olivia M. H., Ayda Susana Ortiz-Baez, John-Sebastian Eden, Mang Shi, Jane E. Williamson, Troy F. Gaston, Yong-Zhen Zhang, Edward C. Holmes, and Jemma L. Geoghegan. "Meta-Transcriptomic Identification of Divergent Amnoonviridae in Fish." Viruses 12, no. 11 (November 4, 2020): 1254. http://dx.doi.org/10.3390/v12111254.
Full textBazile, Jeanne, Florence Jaffrezic, Patrice Dehais, Matthieu Reichstadt, Christophe Klopp, Denis Laloe, and Muriel Bonnet. "Molecular signatures of muscle growth and composition deciphered by the meta-analysis of age-related public transcriptomics data." Physiological Genomics 52, no. 8 (August 1, 2020): 322–32. http://dx.doi.org/10.1152/physiolgenomics.00020.2020.
Full textNoori, Ayush, Aziz M. Mezlini, Bradley T. Hyman, Alberto Serrano-Pozo, and Sudeshna Das. "Systematic review and meta-analysis of human transcriptomics reveals neuroinflammation, deficient energy metabolism, and proteostasis failure across neurodegeneration." Neurobiology of Disease 149 (February 2021): 105225. http://dx.doi.org/10.1016/j.nbd.2020.105225.
Full textRiquelme-Perez, Miriam, Fernando Perez-Sanz, Jean-François Deleuze, Carole Escartin, Eric Bonnet, and Solène Brohard. "DEVEA: an interactive shiny application for Differential Expression analysis, data Visualization and Enrichment Analysis of transcriptomics data." F1000Research 11 (June 28, 2022): 711. http://dx.doi.org/10.12688/f1000research.122949.1.
Full textRosales, Stephanie M., and Rebecca Vega Thurber. "Brain Meta-Transcriptomics from Harbor Seals to Infer the Role of the Microbiome and Virome in a Stranding Event." PLOS ONE 10, no. 12 (December 2, 2015): e0143944. http://dx.doi.org/10.1371/journal.pone.0143944.
Full textCasanova Ferrer, Franc, María Pascual, Marta R. Hidalgo, Pablo Malmierca-Merlo, Consuelo Guerri, and Francisco García-García. "Unveiling Sex-Based Differences in the Effects of Alcohol Abuse: A Comprehensive Functional Meta-Analysis of Transcriptomic Studies." Genes 11, no. 9 (September 21, 2020): 1106. http://dx.doi.org/10.3390/genes11091106.
Full textDeffur, Armin, Robert J. Wilkinson, Bongani M. Mayosi, and Nicola M. Mulder. "ANIMA: Association network integration for multiscale analysis." Wellcome Open Research 3 (March 12, 2018): 27. http://dx.doi.org/10.12688/wellcomeopenres.14073.1.
Full textDi Nanni, Noemi, Matteo Bersanelli, Francesca Anna Cupaioli, Luciano Milanesi, Alessandra Mezzelani, and Ettore Mosca. "Network-Based Integrative Analysis of Genomics, Epigenomics and Transcriptomics in Autism Spectrum Disorders." International Journal of Molecular Sciences 20, no. 13 (July 9, 2019): 3363. http://dx.doi.org/10.3390/ijms20133363.
Full textRosales, Stephanie M., and Rebecca Vega Thurber. "Correction: Brain Meta-Transcriptomics from Harbor Seals to Infer the Role of the Microbiome and Virome in a Stranding Event." PLOS ONE 10, no. 12 (December 29, 2015): e0146208. http://dx.doi.org/10.1371/journal.pone.0146208.
Full textKori, Medi, and Kazim Yalcin Arga. "Potential biomarkers and therapeutic targets in cervical cancer: Insights from the meta-analysis of transcriptomics data within network biomedicine perspective." PLOS ONE 13, no. 7 (July 18, 2018): e0200717. http://dx.doi.org/10.1371/journal.pone.0200717.
Full textTsiantas, Konstantinos, Spyridon J. Konteles, Eftichia Kritsi, Vassilia J. Sinanoglou, Thalia Tsiaka, and Panagiotis Zoumpoulakis. "Effects of Non-Polar Dietary and Endogenous Lipids on Gut Microbiota Alterations: The Role of Lipidomics." International Journal of Molecular Sciences 23, no. 8 (April 7, 2022): 4070. http://dx.doi.org/10.3390/ijms23084070.
Full textDeffur, Armin, Robert J. Wilkinson, Bongani M. Mayosi, and Nicola M. Mulder. "ANIMA: Association network integration for multiscale analysis." Wellcome Open Research 3 (June 5, 2018): 27. http://dx.doi.org/10.12688/wellcomeopenres.14073.2.
Full textDeffur, Armin, Robert J. Wilkinson, Bongani M. Mayosi, and Nicola M. Mulder. "ANIMA: Association network integration for multiscale analysis." Wellcome Open Research 3 (November 14, 2018): 27. http://dx.doi.org/10.12688/wellcomeopenres.14073.3.
Full textLi, Ci-Xiu, Wei-Shan Chang, Katerina Mitsakos, James Rodger, Edward C. Holmes, and Bernard J. Hudson. "Identification of a Novel Equine Papillomavirus in Semen from a Thoroughbred Stallion with a Penile Lesion." Viruses 11, no. 8 (August 4, 2019): 713. http://dx.doi.org/10.3390/v11080713.
Full textRohr, Michael Walter, Jordan Beardsley, Sai Preethi Nakkina, Dexter Hadley, and Deborah Altomare. "Abstract 2689: FGF19 is a novel serum colorectal cancer biomarker that exerts endocrine paraneoplastic effects on hepatic tissue." Cancer Research 82, no. 12_Supplement (June 15, 2022): 2689. http://dx.doi.org/10.1158/1538-7445.am2022-2689.
Full textDekker, Simone E., Ted Bambakidis, Martin Sillesen, Baoling Liu, Yongqing Li, and Hasan B. Alam. "Unraveling the Cytoprotective Effects of Valproic Acid: A Transcriptomics Meta-Analysis of Transfusion Strategies for Hemorrhagic Shock and Traumatic Brain Injury." Blood 138, Supplement 1 (November 5, 2021): 3245. http://dx.doi.org/10.1182/blood-2021-151075.
Full textHovhannisyan, Hrant, Ahmed Hafez, Carlos Llorens, and Toni Gabaldón. "CROSSMAPPER: estimating cross-mapping rates and optimizing experimental design in multi-species sequencing studies." Bioinformatics 36, no. 3 (August 8, 2019): 925–27. http://dx.doi.org/10.1093/bioinformatics/btz626.
Full textKanakoglou, Dimitrios S., Theodora-Dafni Michalettou, Christina Vasileiou, Evangelos Gioukakis, Dorothea Maneta, Konstantinos V. Kyriakidis, Alexandros G. Georgakilas, and Ioannis Michalopoulos. "Effects of High-Dose Ionizing Radiation in Human Gene Expression: A Meta-Analysis." International Journal of Molecular Sciences 21, no. 6 (March 12, 2020): 1938. http://dx.doi.org/10.3390/ijms21061938.
Full textZubcevic, Jasenka, Ashley Baker, and Christopher J. Martyniuk. "Transcriptional networks in rodent models support a role for gut-brain communication in neurogenic hypertension: a review of the evidence." Physiological Genomics 49, no. 7 (July 1, 2017): 327–38. http://dx.doi.org/10.1152/physiolgenomics.00010.2017.
Full textCho, Seong Beom. "Uncovering Oncogenic Mechanisms of Tumor Suppressor Genes in Breast Cancer Multi-Omics Data." International Journal of Molecular Sciences 23, no. 17 (August 25, 2022): 9624. http://dx.doi.org/10.3390/ijms23179624.
Full textLu, Yuanping, Renjun Yang, Nuoya Yin, and Francesco Faiola. "In vivo and in vitro transcriptomics meta-analyses reveal that BPA may affect TGF-beta signaling regardless of the toxicology system employed." Environmental Pollution 285 (September 2021): 117472. http://dx.doi.org/10.1016/j.envpol.2021.117472.
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