Journal articles on the topic 'Meta-barcoding'
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Keller, Alexander, Sonja Hohlfeld, Andreas Kolter, Jörg Schultz, Birgit Gemeinholzer, and Markus J. Ankenbrand. "BCdatabaser: on-the-fly reference database creation for (meta-)barcoding." Bioinformatics 36, no. 8 (January 6, 2020): 2630–31. http://dx.doi.org/10.1093/bioinformatics/btz960.
Full textJo, Hyunbin, Dong-Kyun Kim, Kiyun Park, and Ihn-Sil Kwak. "Discrimination of Spatial Distribution of Aquatic Organisms in a Coastal Ecosystem Using eDNA." Applied Sciences 9, no. 17 (August 21, 2019): 3450. http://dx.doi.org/10.3390/app9173450.
Full textBalech, Bachir, Anna Sandionigi, Caterina Manzari, Emiliano Trucchi, Apollonia Tullo, Flavio Licciulli, Giorgio Grillo, et al. "Tackling critical parameters in metazoan meta-barcoding experiments: a preliminary study based on coxI DNA barcode." PeerJ 6 (June 13, 2018): e4845. http://dx.doi.org/10.7717/peerj.4845.
Full textANDERSEN, KENNETH, KAREN LISE BIRD, MORTEN RASMUSSEN, JAMES HAILE, HENRIK BREUNING-MADSEN, KURT H. KJAER, LUDOVIC ORLANDO, M. THOMAS P. GILBERT, and ESKE WILLERSLEV. "Meta-barcoding of ‘dirt’ DNA from soil reflects vertebrate biodiversity." Molecular Ecology 21, no. 8 (September 14, 2011): 1966–79. http://dx.doi.org/10.1111/j.1365-294x.2011.05261.x.
Full textTerrat, S., S. Dequiedt, W. Horrigue, M. Lelievre, C. Cruaud, N. P. A. Saby, C. Jolivet, et al. "Improving soil bacterial taxa–area relationships assessment using DNA meta-barcoding." Heredity 114, no. 5 (October 8, 2014): 468–75. http://dx.doi.org/10.1038/hdy.2014.91.
Full textLiu, Yin, Xiaowei Li, Yufeng Chen, Guangzhou Geng, Junjie Li, Yongtian Wang, and Lingling Huang. "Imaging-based optical barcoding for relative humidity sensing based on meta-tip." Nanophotonics 11, no. 1 (November 2, 2021): 111–18. http://dx.doi.org/10.1515/nanoph-2021-0529.
Full textByers, Philicity R. M., Rodger C. Evans, Zoë Migicovsky, and Allison K. Walker. "Fungal symbionts of endangered Crocanthemum canadense (Cistaceae) in Nova Scotia." Botany 99, no. 7 (July 2021): 403–19. http://dx.doi.org/10.1139/cjb-2020-0187.
Full textProdinger, Florian, Hisashi Endo, Yasuhiro Gotoh, Yanze Li, Daichi Morimoto, Kimiho Omae, Kento Tominaga, et al. "An Optimized Metabarcoding Method for Mimiviridae." Microorganisms 8, no. 4 (April 2, 2020): 506. http://dx.doi.org/10.3390/microorganisms8040506.
Full textSantoferrara, Luciana F., Ewelina Rubin, and George B. Mcmanus. "Global and local DNA (meta)barcoding reveal new biogeography patterns in tintinnid ciliates." Journal of Plankton Research 40, no. 3 (April 12, 2018): 209–21. http://dx.doi.org/10.1093/plankt/fby011.
Full textSato, Jun J., Takuya Shimada, Daisuke Kyogoku, Taketo Komura, Shigeru Uemura, Takashi Saitoh, and Yuji Isagi. "Dietary niche partitioning between sympatric wood mouse species (Muridae: Apodemus) revealed by DNA meta-barcoding analysis." Journal of Mammalogy 99, no. 4 (June 14, 2018): 952–64. http://dx.doi.org/10.1093/jmammal/gyy063.
Full textHan, Sang-Hyun, Tae-wook Kim, Jeong-jin Kim, Rak-Won Kim, Jong-baek Kim, Man-woo Kim, Ju-yeol Choi, et al. "A Preliminary Study for Identifying Dietary Resources Using Fecal DNA Meta-barcoding in the Asiatic Black Bears." Korea National Park Research Institute 12, no. 1 (June 30, 2021): 27–36. http://dx.doi.org/10.54406/jnpr.2021.12.1.027.
Full textComtet, Thierry, Anna Sandionigi, Frédérique Viard, and Maurizio Casiraghi. "DNA (meta)barcoding of biological invasions: a powerful tool to elucidate invasion processes and help managing aliens." Biological Invasions 17, no. 3 (February 10, 2015): 905–22. http://dx.doi.org/10.1007/s10530-015-0854-y.
Full textRuiz-Sanchez, Eduardo, Carlos Alonso Maya-Lastra, Victor W. Steinmann, Sergio Zamudio, Eleazar Carranza, Rosa María Murillo, and Jerzy Rzedowski. "Datataxa: a new script to extract metadata sequence information from GenBank, the Flora of Bajío as a case study." Botanical Sciences 97, no. 4 (December 19, 2019): 754–60. http://dx.doi.org/10.17129/botsci.2226.
Full textPandit, Ramesh, Tasnim Travadi, Sonal Sharma, Chaitanya Joshi, and Madhvi Joshi. "DNA meta‐barcoding using rbcL based mini‐barcode revealed presence of unspecified plant species in Ayurvedic polyherbal formulations." Phytochemical Analysis 32, no. 5 (February 2021): 804–10. http://dx.doi.org/10.1002/pca.3026.
Full textChen, Ko-Hsuan, Reid Longley, Gregory Bonito, and Hui-Ling Liao. "A Two-Step PCR Protocol Enabling Flexible Primer Choice and High Sequencing Yield for Illumina MiSeq Meta-Barcoding." Agronomy 11, no. 7 (June 23, 2021): 1274. http://dx.doi.org/10.3390/agronomy11071274.
Full textMbareche, Hamza, Nathan Dumont-Leblond, Guillaume J. Bilodeau, and Caroline Duchaine. "An Overview of Bioinformatics Tools for DNA Meta-Barcoding Analysis of Microbial Communities of Bioaerosols: Digest for Microbiologists." Life 10, no. 9 (September 8, 2020): 185. http://dx.doi.org/10.3390/life10090185.
Full textYEAGASHI, Sakiko, Hiroki HOSOKAWA, and Kozo WATANABE. "META-BARCODING BASED ASSESSMENT OF WATER ENVIRONEMTAL DNA TO REVEAL ABUNDANCCE OF FRESHWATER INSECTS USING NEXT-GENELATION SEQUENCING." Journal of Japan Society of Civil Engineers, Ser. G (Environmental Research) 73, no. 7 (2017): III_139—III_147. http://dx.doi.org/10.2208/jscejer.73.iii_139.
Full textJØRGENSEN, TINA, KURT H. KJAER, JAMES HAILE, MORTEN RASMUSSEN, SANNE BOESSENKOOL, KENNETH ANDERSEN, ERIC COISSAC, et al. "Islands in the ice: detecting past vegetation on Greenlandic nunataks using historical records and sedimentary ancient DNA Meta-barcoding." Molecular Ecology 21, no. 8 (September 22, 2011): 1980–88. http://dx.doi.org/10.1111/j.1365-294x.2011.05278.x.
Full textShahraki, Abdolrazagh Hashemi, Subba Rao Chaganti, and Daniel Heath. "Assessing high-throughput environmental DNA extraction methods for meta-barcode characterization of aquatic microbial communities." Journal of Water and Health 17, no. 1 (October 30, 2018): 37–49. http://dx.doi.org/10.2166/wh.2018.108.
Full textJo, Hyunbin, Bohyung Choi, Kiyun Park, Won-Seok Kim, and Ihn-Sil Kwak. "First Gut Content Analysis of 4th Instar Midge Larvae (Diptera: Chronomidae) In Large-Scale Weirs Using a DNA Meta-Barcoding Approach." International Journal of Environmental Research and Public Health 17, no. 8 (April 21, 2020): 2856. http://dx.doi.org/10.3390/ijerph17082856.
Full textEstrada-Franco, José Guillermo, Nadia A. Fernández-Santos, Adeniran A. Adebiyi, María de J. López-López, Jesús A. Aguilar-Durán, Luis M. Hernández-Triana, Sean W. J. Prosser, et al. "Vertebrate-Aedes aegypti and Culex quinquefasciatus (Diptera)-arbovirus transmission networks: Non-human feeding revealed by meta-barcoding and next-generation sequencing." PLOS Neglected Tropical Diseases 14, no. 12 (December 31, 2020): e0008867. http://dx.doi.org/10.1371/journal.pntd.0008867.
Full textBlaxter, Mark L. "The promise of a DNA taxonomy." Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences 359, no. 1444 (April 29, 2004): 669–79. http://dx.doi.org/10.1098/rstb.2003.1447.
Full textKumar, Niraj. "Application of 16 rRNA Gene of V3-V4 Region for Meta Barcoding of Bacterial Community in High Density Population of Eastern India." Bioscience Biotechnology Research Communications 13, no. 4 (December 25, 2020): 1871–78. http://dx.doi.org/10.21786/bbrc/13.4/36.
Full textSnyder, Susan R., Alessandra M. Favoretto, James H. Derzon, Robert H. Christenson, Stephen E. Kahn, Colleen S. Shaw, Rich Ann Baetz, et al. "Effectiveness of barcoding for reducing patient specimen and laboratory testing identification errors: A Laboratory Medicine Best Practices systematic review and meta-analysis." Clinical Biochemistry 45, no. 13-14 (September 2012): 988–98. http://dx.doi.org/10.1016/j.clinbiochem.2012.06.019.
Full textWolińska, Agnieszka, Agnieszka Kuźniar, and Anna Gałązka. "Biodiversity in the Rhizosphere of Selected Winter Wheat (Triticum aestivum L.) Cultivars—Genetic and Catabolic Fingerprinting." Agronomy 10, no. 7 (July 2, 2020): 953. http://dx.doi.org/10.3390/agronomy10070953.
Full textLi, Yanze, Pascal Hingamp, Hiroyasu Watai, Hisashi Endo, Takashi Yoshida, and Hiroyuki Ogata. "Degenerate PCR Primers to Reveal the Diversity of Giant Viruses in Coastal Waters." Viruses 10, no. 9 (September 13, 2018): 496. http://dx.doi.org/10.3390/v10090496.
Full textZamoroka, A. M., D. V. Semaniuk, V. Yu Shparyk, T. V. Mykytyn, and S. V. Skrypnyk. "Taxonomic Position of Anastrangalia reyi and A. sequensi (Coleoptera, Cerambycidae) Based on Molecular and Morphological Data." Vestnik Zoologii 53, no. 3 (June 1, 2019): 209–26. http://dx.doi.org/10.2478/vzoo-2019-0021.
Full textMetfies, Katja, Johanna Hessel, Robin Klenk, Wilhelm Petersen, Karen Helen Wiltshire, and Alexandra Kraberg. "Uncovering the intricacies of microbial community dynamics at Helgoland Roads at the end of a spring bloom using automated sampling and 18S meta-barcoding." PLOS ONE 15, no. 6 (June 22, 2020): e0233921. http://dx.doi.org/10.1371/journal.pone.0233921.
Full textHeo, Young-Mok, Hanbyul Lee, Sun-Lul Kwon, Yeonjae Yoo, Dongjun Kim, Sang-Il Han, Aslan-Hwanhwi Lee, Changmu Kim, Gyu-Hyeok Kim, and Jae-Jin Kim. "Influence of Tree Vegetation on Soil Microbial Communities in Temperate Forests and Their Potential as a Proactive Indicator of Vegetation Shift Due to Climate Change." Sustainability 12, no. 24 (December 18, 2020): 10591. http://dx.doi.org/10.3390/su122410591.
Full textCloutier, Véronique B., Yves Piché, J. André Fortin, Jean A. Bérubé, Hélène Glémet, and André Desrochers. "A novel approach for tracing mycophagous small mammals and documenting their fungal diets." Botany 97, no. 9 (September 2019): 475–785. http://dx.doi.org/10.1139/cjb-2018-0222.
Full textWolińska, Agnieszka, Kinga Włodarczyk, Agnieszka Kuźniar, Anna Marzec-Grządziel, Jarosław Grządziel, Anna Gałązka, and Łukasz Uzarowicz. "Soil Microbial Community Profiling and Bacterial Metabolic Activity of Technosols as an Effect of Soil Properties following Land Reclamation: A Case Study from the Abandoned Iron Sulphide and Uranium Mine in Rudki (South-Central Poland)." Agronomy 10, no. 11 (November 16, 2020): 1795. http://dx.doi.org/10.3390/agronomy10111795.
Full textThanni, Bolaji, Roel Merckx, Pieterjan De Bauw, Margaux Boeraeve, Gerrit Peeters, Stefan Hauser, and Olivier Honnay. "Spatial variability and environmental drivers of cassava—arbuscular mycorrhiza fungi (AMF) associations across Southern Nigeria." Mycorrhiza 32, no. 1 (January 2022): 1–13. http://dx.doi.org/10.1007/s00572-021-01058-x.
Full textBalaban, Metin, Shahab Sarmashghi, and Siavash Mirarab. "APPLES: Scalable Distance-Based Phylogenetic Placement with or without Alignments." Systematic Biology 69, no. 3 (September 23, 2019): 566–78. http://dx.doi.org/10.1093/sysbio/syz063.
Full textLiu, Gang, Aaron B. A. Shafer, Xiaolong Hu, Linhai Li, Yu Ning, Minghao Gong, Lijuan Cui, et al. "Meta-barcoding insights into the spatial and temporal dietary patterns of the threatened Asian Great Bustard (Otis tarda dybowskii) with potential implications for diverging migratory strategies." Ecology and Evolution 8, no. 3 (January 8, 2018): 1736–45. http://dx.doi.org/10.1002/ece3.3791.
Full textKatsi, Pavlina, Ioanna S. Kosma, Sofia Michailidou, Anagnostis Argiriou, Anastasia V. Badeka, and Michael G. Kontominas. "Characterization of Artisanal Spontaneous Sourdough Wheat Bread from Central Greece: Evaluation of Physico-Chemical, Microbiological, and Sensory Properties in Relation to Conventional Yeast Leavened Wheat Bread." Foods 10, no. 3 (March 17, 2021): 635. http://dx.doi.org/10.3390/foods10030635.
Full textCuijvers, Kathleen, Steven Van Den Heuvel, Cristian Varela, Mark Rullo, Mark Solomon, Simon Schmidt, and Anthony Borneman. "Alterations in Yeast Species Composition of Uninoculated Wine Ferments by the Addition of Sulphur Dioxide." Fermentation 6, no. 2 (June 23, 2020): 62. http://dx.doi.org/10.3390/fermentation6020062.
Full textZhang, Hai-Guang, Min-Hua Lv, Wen-Bo Yi, Wei-Bing Zhu, and Wen-Jun Bu. "Species diversity can be overestimated by a fixed empirical threshold: insights from DNA barcoding of the genusCletus(Hemiptera: Coreidae) and the meta-analysis ofCOIdata from previous phylogeographical studies." Molecular Ecology Resources 17, no. 2 (August 20, 2016): 314–23. http://dx.doi.org/10.1111/1755-0998.12571.
Full textParlapani, Foteini F., Sofia Michailidou, Konstantinos Pasentsis, Anagnostis Argiriou, Grigorios Krey, and Ioannis S. Boziaris. "A meta-barcoding approach to assess and compare the storage temperature-dependent bacterial diversity of gilt-head sea bream ( Sparus aurata ) originating from fish farms from two geographically distinct areas of Greece." International Journal of Food Microbiology 278 (August 2018): 36–43. http://dx.doi.org/10.1016/j.ijfoodmicro.2018.04.027.
Full textMumme, Hope L., Swati S. Bhasin, Beena E. Thomas, Deborah DeRyckere, Sharon M. Castellino, Douglas K. Graham, Sunil S. Raikar, and Manoj Bhasin. "Single Cell RNA Sequencing Driven Characterization of Rare B/Myeloid and T/Myeloid Mixed Phenotype Acute Leukemia." Blood 138, Supplement 1 (November 5, 2021): 3455. http://dx.doi.org/10.1182/blood-2021-153776.
Full textKholilah, Nenik, Norma Afiati, Subagiyo Subagiyo, and Retno Hartati. "Meta-analysis of Indonesian Octopus laqueus Kaneko & Kubodera 2005 (Cephalopoda: Octopodidae) using Mt-DNA COI as Genetic Marker." Jurnal Kelautan Tropis 24, no. 1 (February 12, 2021): 7–14. http://dx.doi.org/10.14710/jkt.v24i1.10190.
Full textZhu, Shuang, Qiaozhen Liu, Simin Qiu, Jiangpeng Dai, and Xiaoxia Gao. "DNA barcoding: an efficient technology to authenticate plant species of traditional Chinese medicine and recent advances." Chinese Medicine 17, no. 1 (September 28, 2022). http://dx.doi.org/10.1186/s13020-022-00655-y.
Full textHoldaway, Robert, Jamie Wood, Ian Dickie, Kate Orwin, Peter Bellingham, Sarah Richardson, Phil Lyver, Puke Timoti, and Thomas Buckley. "Using DNA meta barcoding to assess New Zealand's terrestrial biodiversity." New Zealand Journal of Ecology 41, no. 2 (2017). http://dx.doi.org/10.20417/nzjecol.41.28.
Full textSternes, Peter R., Danna Lee, Dariusz R. Kutyna, and Anthony R. Borneman. "A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation." GigaScience 6, no. 7 (June 8, 2017). http://dx.doi.org/10.1093/gigascience/gix040.
Full textWylezich, Claudia, and Dirk Höper. "Meta-Ribosomalomics: RNA Sequencing Is an Unbiased Method for Parasite Detection of Different Sample Types." Frontiers in Microbiology 12 (June 21, 2021). http://dx.doi.org/10.3389/fmicb.2021.614553.
Full textBuchner, Dominik, Till-Hendrik Macher, and Florian Leese. "APSCALE: advanced pipeline for simple yet comprehensive analyses of DNA Meta-barcoding data." Bioinformatics, August 27, 2022. http://dx.doi.org/10.1093/bioinformatics/btac588.
Full textMahima, Karthikeyan, Koppala Narayana Sunil Kumar, Kanakarajan Vijayakumari Rakhesh, Parameswaran Sathiya Rajeswaran, Ashutosh Sharma, and Ramalingam Sathishkumar. "Advancements and future prospective of DNA barcodes in the herbal drug industry." Frontiers in Pharmacology 13 (October 21, 2022). http://dx.doi.org/10.3389/fphar.2022.947512.
Full textLandinez-Torres, Angela, Simona Panelli, Anna Maria Picco, Francesco Comandatore, Solveig Tosi, and Enrica Capelli. "A meta-barcoding analysis of soil mycobiota of the upper Andean Colombian agro-environment." Scientific Reports 9, no. 1 (July 12, 2019). http://dx.doi.org/10.1038/s41598-019-46485-1.
Full textSickel, Wiebke, Markus J. Ankenbrand, Gudrun Grimmer, Andrea Holzschuh, Stephan Härtel, Jonathan Lanzen, Ingolf Steffan-Dewenter, and Alexander Keller. "Increased efficiency in identifying mixed pollen samples by meta-barcoding with a dual-indexing approach." BMC Ecology 15, no. 1 (July 22, 2015). http://dx.doi.org/10.1186/s12898-015-0051-y.
Full textLaha, Rama Chandra, Surajit De Mandal, Lalhmanghai Ralte, Laldinfeli Ralte, Nachimuthu Senthil Kumar, Guruswami Gurusubramanian, Ramalingam Satishkumar, Raja Mugasimangalam, and Nagesh Aswathnarayana Kuravadi. "Meta-barcoding in combination with palynological inference is a potent diagnostic marker for honey floral composition." AMB Express 7, no. 1 (June 24, 2017). http://dx.doi.org/10.1186/s13568-017-0429-7.
Full textYANG Liping, 杨丽平, 常会会 CHANG Huihui, 李杰 LI Jie, 张智斌 ZHANG Zhibin, and 黄原 HUANG Yuan. "Study of the biodiversity in intestinal symbiotic fungi in grasshoppers species by using DNA meta-barcoding." Acta Ecologica Sinica 37, no. 20 (2017). http://dx.doi.org/10.5846/stxb201606211216.
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