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1

Wulff, Janie L. "Ecological interactions of marine sponges." Canadian Journal of Zoology 84, no. 2 (February 1, 2006): 146–66. http://dx.doi.org/10.1139/z06-019.

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Sponges interact with most other organisms in marine systems as competitors, symbionts, hosts of symbionts, consumers, and prey. Considerable creative energy has been required to study and describe the amazing variety of sponge interactions, as sponges can hide symbionts deep inside, rapidly regenerate wounds from grazers, carry on important associations with unculturable microscopic organisms, and otherwise foil attempts to determine how they are interacting with other organisms. This review of sponge interactions covers (i) competition among sponge species, and between sponges and other sessile organisms; (ii) predation on sponges by sponge specialists and by opportunistic sponge feeders, and aspects of predation such as the importance of nutritional quality, trade-offs between growth and defense against predators, biogeographic patterns in predation, and the advantages of various techniques for studying predation; and (iii) symbiotic associations of sponges with a variety of organisms representing all types of life, and with results ranging from parasitism and disease to mutual benefit. A hint that some generalizations about ecological interactions of sponges may be possible is just becoming evident, as accumulating data appear to show taxonomic and geographic patterns; however, it is also clear that surprises will continue to emerge from every probing new study.
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2

Poluan, Gledys Giacinta, Elvy Like Ginting, Stenly Wullur, Veibe Warouw, Fitje Vera Losung, and Meiske Salaki. "KARAKTERISTIK MORFOLOGI BAKTERI SIMBION SPONS MENYERUPAI Cribochalina sp DARI PERAIRAN MALALAYANG SULAWESI UTARA." JURNAL PESISIR DAN LAUT TROPIS 7, no. 3 (July 23, 2019): 190. http://dx.doi.org/10.35800/jplt.7.3.2019.24452.

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Bacteria are found to be highly associated with various marine organisms, such as sponges. Sponges are known as the product of bioactive compounds. However, some of the compounds produced by sponges are obtained by the simbion-bacteria. Therefore this situation enables sponges simbion bacteria to play a major role in producing bioactive compounds that have been isolated from the sponge. The purpose of this study is to isolate and determine the characteristics of morphology of spongy simbion bacteria resembling Cribochalina sp, which was taken from Malalayang waters, North Sulawesi. Sponge simbion bacteria grow on NB media. Initially, a free-breeding colony was being done before bacteria were accrued in the NA media by 2% sponge broth (patent SID201906301) by means of Strike Plate methods. Based on to this study we had isolate five spongy simbion bacteria that resembling the Cribochalina sp. All five of these isolations have different characteristics of morphology in terms of color, shape, size, and elevation. Keywords : bacteria, isolation, simbionts, sponges
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3

Gao, Zheng, Binglin Li, Chengchao Zheng, and Guangyi Wang. "Molecular Detection of Fungal Communities in the Hawaiian Marine Sponges Suberites zeteki and Mycale armata." Applied and Environmental Microbiology 74, no. 19 (August 1, 2008): 6091–101. http://dx.doi.org/10.1128/aem.01315-08.

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ABSTRACT Symbiotic microbes play a variety of fundamental roles in the health and habitat ranges of their hosts. While prokaryotes in marine sponges have been broadly characterized, the diversity of sponge-inhabiting fungi has barely been explored using molecular approaches. Fungi are an important component of many marine and terrestrial ecosystems, and they may be an ecologically significant group in sponge-microbe interactions. This study tested the feasibility of using existing fungal primers for molecular analysis of sponge-associated fungal communities. None of the eight selected primer pairs yielded satisfactory results in fungal rRNA gene or internal transcribed spacer (ITS) clone library constructions. However, 3 of 10 denaturing gradient gel electrophoresis (DGGE) primer sets, which were designed to preferentially amplify fungal rRNA gene or ITS regions from terrestrial environmental samples, were successfully amplified from fungal targets in marine sponges. DGGE analysis indicated that fungal communities differ among different sponge species (Suberites zeteki and Mycale armata) and also vary between sponges and seawater. Sequence analysis of DGGE bands identified 23 and 21 fungal species from each of the two sponge species S. zeteki and M. armata, respectively. These species were representatives of 11 taxonomic orders and belonged to the phyla of Ascomycota (seven orders) and Basidiomycota (four orders). Five of these taxonomic orders (Malasseziales, Corticiales, Polyporales, Agaricales, and Dothideomycetes et Chaetothyriomcetes incertae sedis) have now been identified for the first time in marine sponges. Seven and six fungal species from S. zeteki and M. armata, respectively, are potentially new species because of their low sequence identity (≤98%) with their references in GenBank. Phylogenetic analysis indicated sponge-derived sequences were clustered into “marine fungus clades” with those from other marine habitats. This is the first report of molecular analysis of fungal communities in marine sponges, adding depth and dimension to our understanding of sponge-associated microbial communities.
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4

Mohanty, Ipsita, Sheila Podell, Jason S. Biggs, Neha Garg, Eric E. Allen, and Vinayak Agarwal. "Multi-Omic Profiling of Melophlus Sponges Reveals Diverse Metabolomic and Microbiome Architectures that Are Non-overlapping with Ecological Neighbors." Marine Drugs 18, no. 2 (February 19, 2020): 124. http://dx.doi.org/10.3390/md18020124.

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Marine sponge holobionts, defined as filter-feeding sponge hosts together with their associated microbiomes, are prolific sources of natural products. The inventory of natural products that have been isolated from marine sponges is extensive. Here, using untargeted mass spectrometry, we demonstrate that sponges harbor a far greater diversity of low-abundance natural products that have evaded discovery. While these low-abundance natural products may not be feasible to isolate, insights into their chemical structures can be gleaned by careful curation of mass fragmentation spectra. Sponges are also some of the most complex, multi-organismal holobiont communities in the oceans. We overlay sponge metabolomes with their microbiome structures and detailed metagenomic characterization to discover candidate gene clusters that encode production of sponge-derived natural products. The multi-omic profiling strategy for sponges that we describe here enables quantitative comparison of sponge metabolomes and microbiomes to address, among other questions, the ecological relevance of sponge natural products and for the phylochemical assignment of previously undescribed sponge identities.
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5

Uy, Mylene. "ID2017 Cytotoxic activities of Philippine marine sponges against colon cancer cells." Biomedical Research and Therapy 4, S (September 5, 2017): 50. http://dx.doi.org/10.15419/bmrat.v4is.260.

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Although the diversity of life in the terrestrial environment is exceptional, the greatest biodiversity is in the marine environment. Among the marine organisms, the sponges (Porifera) are the most prolific sources of bioactive secondary metabolites. The Philippines, with its long coastal lines, has drawn on its marine capital only to a small extent. Only a few marine organisms (ascidians, sponges, other marine invertebrates and their associated microorganisms) collected from various parts of the Philippines have been documented and investigated in terms of their potential as source of bioactive secondary metabolites, particularly anticancer compounds. Thirty-seven sponges from the coasts off Mindanao, Philippines were collected, identifies and extracted to give a total of seventy-four polar and nonpolar extracts. The corresponding sponge extracts were screened for the sponge extracts were investigated for cytotoxicity towards colon cell lines (HCT116) using the the tetrazolium dye (3-(4,5-Dimethylthiazol-2-yl)- 2,5- diphenyltetrazolium bromide) [MTTmethod. The results indicated fifteen (15) sponge extracts to be active at 100- microgram/mL concentration among which seven (7) were still active at 10 microgram/mL while two (2) still exhibited activity at 1 microgram/mL. Further investigation of the active sponge extracts is currently in progress
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6

Freeman, Christopher J., Cole G. Easson, and David M. Baker. "Niche structure of marine sponges from temperate hard-bottom habitats within Gray's Reef National Marine Sanctuary." Journal of the Marine Biological Association of the United Kingdom 96, no. 2 (April 10, 2015): 559–65. http://dx.doi.org/10.1017/s0025315415000363.

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Many species of marine sponges on tropical reefs host abundant and diverse symbiont communities capable of varied metabolic pathways. While such communities may confer a nutritional benefit to some hosts (termed High Microbial Abundance (HMA) sponges), other sympatric species host only sparse symbiont communities (termed Low Microbial Abundance (LMA) sponges) and obtain a majority of their C and N from local sources. Sponge communities are widespread across large latitudinal gradients, however, and recent evidence suggests that these symbioses may also extend beyond the tropics. We investigated the role that symbionts play in the ecology of sponges from the temperate, hard-bottom reefs of Gray's Reef National Marine Sanctuary by calculating the niche size (as standard ellipse area (SEAc)) and assessing the relative placement of five HMA and four LMA sponge species within bivariate (δ13C and δ15N) isotopic space. Although photosymbiont abundance was low across most of these species, sponges were widespread across isotopic niche space, implying that microbial metabolism confers an ecological benefit to temperate sponges by expanding host metabolic capability. To examine how these associations vary across a latitudinal gradient, we also compared the relative placement of temperate and tropical conspecifics within isotopic space. Surprisingly, shifts in sponge δ13C and δ15N values between these regions suggest a reduced reliance on symbiont-derived nutrients in temperate sponges compared with their tropical conspecifics. Despite this, symbiotic sponges in temperate systems likely have a competitive advantage, allowing them to grow and compete for space within these habitats.
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7

Proksch, P., R. Ebel, R. A. Edrada, P. Schupp, W. H. Lin, V. Wray, and K. Steube. "Detection of pharmacologically active natural products using ecology. Selected examples from Indopacific marine invertebrates and sponge-derived fungi." Pure and Applied Chemistry 75, no. 2-3 (January 1, 2003): 343–52. http://dx.doi.org/10.1351/pac200375020343.

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This review article presents our group's recent research findings with regard to bioactive natural products from marine sponges and tunicates, as well as from sponge derived fungi. The organisms discussed originate in the Indopacific region, which has an exceptionally rich marine biodiversity. Major topics that are covered in our review include the chemical ecology of sponges, focusing on defense against fishes, as well as the isolation and identification of new bioactive constituents from sponges and tunicates. Sponge derived fungi are introduced as an emerging source for new bioactive metabolites, reflecting the currently growing interest in natural products from marine microorganisms.
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8

Novanna, M., K. R. Ethiraj, and S. Kannadasan. "An Overview of Synthesis of Indole Alkaloids and Biological Activities of Secondary Metabolites Isolated from Hyrtios Species." Mini-Reviews in Medicinal Chemistry 19, no. 3 (January 11, 2019): 194–205. http://dx.doi.org/10.2174/1389557518666181102110537.

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Marine sponges are a rich source of more than 50% of marine natural compounds that have been isolated from marine organisms. This review article is focused on the importance of biologically active and pharmaceutically important secondary metabolites extracted from one of the important classes of marine sponge Hyrtios sp. This review also deals with reported synthetic routes of some indole alkaloids extracted from the marine sponge Hyrtios sp. A range of bioactivities displayed by indole-based alkaloids is described.
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9

Galitz, Adrian, Yoichi Nakao, Peter J. Schupp, Gert Wörheide, and Dirk Erpenbeck. "A Soft Spot for Chemistry–Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution." Marine Drugs 19, no. 8 (August 4, 2021): 448. http://dx.doi.org/10.3390/md19080448.

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Marine sponges are the most prolific marine sources for discovery of novel bioactive compounds. Sponge secondary metabolites are sought-after for their potential in pharmaceutical applications, and in the past, they were also used as taxonomic markers alongside the difficult and homoplasy-prone sponge morphology for species delineation (chemotaxonomy). The understanding of phylogenetic distribution and distinctiveness of metabolites to sponge lineages is pivotal to reveal pathways and evolution of compound production in sponges. This benefits the discovery rate and yield of bioprospecting for novel marine natural products by identifying lineages with high potential of being new sources of valuable sponge compounds. In this review, we summarize the current biochemical data on sponges and compare the metabolite distribution against a sponge phylogeny. We assess compound specificity to lineages, potential convergences, and suitability as diagnostic phylogenetic markers. Our study finds compound distribution corroborating current (molecular) phylogenetic hypotheses, which include yet unaccepted polyphyly of several demosponge orders and families. Likewise, several compounds and compound groups display a high degree of lineage specificity, which suggests homologous biosynthetic pathways among their taxa, which identifies yet unstudied species of this lineage as promising bioprospecting targets.
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10

Cuc, Nguyen Thi Kim, Ton That Huu Dat, Tran Thi Hong, and Pham Viet Cuong. "Phylogenetic diversity of microorganisms associated with three marine sponges from Mien Trung sea of Vietnam." Vietnam Journal of Science and Technology 55, no. 2 (April 17, 2017): 168. http://dx.doi.org/10.15625/0866-708x/55/2/8577.

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Using culture - independent technique, hypervariable V4 region of 16S rDNA library sequencing by MiSEq, the baterial communities of three host sponges Rhabdastrella sp. DN, Spheciospongia sp. QT and Clathria sp. NT from Mien Trung sea were characterized. The phylogenetic analysis showed that bacterial community structures of the three investigated sponges similar to each other regarding 10 common phyla, although abundance of these phyla was different for each sponge. Phylum Thaumarchaeota was rich component for three sponges, especially in NT sponge (31.89%). In this sponge, 3 phyla Planctomycetes, Verrucomicrobia and Firmicutes were undetected in other 2 sponge samples. Phyla Cyanobacteria was observed only in DN sponge. The obtained amplicons were assigned in different taxonomic levels (class, order, family and genus) based on Silva database. At class level, Gammaproteobacteria was abundant in three sponges; and Caldilineae, Marine-group I were dominant in DN; mealwile, in QT other dominant classes were Marine-group I and Betaproteobacteria. For NT, they were Cytophaga and Deferribacteres. In general, all three sponges harbored abundant and genetically diverse microbial associated consortia and they shared several common bacterial operational taxonomic units, although with different abundance.
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11

Pawlik, Joseph R., and Steven E. McMurray. "The Emerging Ecological and Biogeochemical Importance of Sponges on Coral Reefs." Annual Review of Marine Science 12, no. 1 (January 3, 2020): 315–37. http://dx.doi.org/10.1146/annurev-marine-010419-010807.

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With the decline of reef-building corals on tropical reefs, sponges have emerged as an important component of changing coral reef ecosystems. Seemingly simple, sponges are highly diverse taxonomically, morphologically, and in terms of their relationships with symbiotic microbes, and they are one of nature's richest sources of novel secondary metabolites. Unlike most other benthic organisms, sponges have the capacity to disrupt boundary flow as they pump large volumes of seawater into the water column. This seawater is chemically transformed as it passes through the sponge body as a consequence of sponge feeding, excretion, and the activities of microbial symbionts, with important effects on carbon and nutrient cycling and on the organisms in the water column and on the adjacent reef. In this review, we critically evaluate developments in the recently dynamic research area of sponge ecology on tropical reefs and provide a perspective for future studies.
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12

Rooks, Christine, James Kar-Hei Fang, Pål Tore Mørkved, Rui Zhao, Hans Tore Rapp, Joana R. Xavier, and Friederike Hoffmann. "Deep-sea sponge grounds as nutrient sinks: denitrification is common in boreo-Arctic sponges." Biogeosciences 17, no. 5 (March 6, 2020): 1231–45. http://dx.doi.org/10.5194/bg-17-1231-2020.

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Abstract. Sponges are commonly known as general nutrient providers for the marine ecosystem, recycling organic matter into various forms of bioavailable nutrients such as ammonium and nitrate. In this study we challenge this view. We show that nutrient removal through microbial denitrification is a common feature in six cold-water sponge species from boreal and Arctic sponge grounds. Denitrification rates were quantified by incubating sponge tissue sections with 15NO3--amended oxygen-saturated seawater, mimicking conditions in pumping sponges, and de-oxygenated seawater, mimicking non-pumping sponges. It was not possible to detect any rates of anaerobic ammonium oxidation (anammox) using incubations with 15NH4+. Denitrification rates of the different sponge species ranged from below detection to 97 nmol N cm−3 sponge d−1 under oxic conditions, and from 24 to 279 nmol N cm−3 sponge d−1 under anoxic conditions. A positive relationship between the highest potential rates of denitrification (in the absence of oxygen) and the species-specific abundances of nirS and nirK genes encoding nitrite reductase, a key enzyme for denitrification, suggests that the denitrifying community in these sponge species is active and prepared for denitrification. The lack of a lag phase in the linear accumulation of the 15N-labelled N2 gas in any of our tissue incubations is another indicator for an active community of denitrifiers in the investigated sponge species. Low rates for coupled nitrification–denitrification indicate that also under oxic conditions, the nitrate used to fuel denitrification rates was derived rather from the ambient seawater than from sponge nitrification. The lack of nifH genes encoding nitrogenase, the key enzyme for nitrogen fixation, shows that the nitrogen cycle is not closed in the sponge grounds. The denitrified nitrogen, no matter its origin, is then no longer available as a nutrient for the marine ecosystem. These results suggest a high potential denitrification capacity of deep-sea sponge grounds based on typical sponge biomass on boreal and Arctic sponge grounds, with areal denitrification rates of 0.6 mmol N m−2 d−1 assuming non-pumping sponges and still 0.3 mmol N m−2 d−1 assuming pumping sponges. This is well within the range of denitrification rates of continental shelf sediments. Anthropogenic impact and global change processes affecting the sponge redox state may thus lead to deep-sea sponge grounds changing their role in marine ecosystem from being mainly nutrient sources to becoming mainly nutrient sinks.
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13

Zhang, Fan, Leah C. Blasiak, Jan O. Karolin, Ryan J. Powell, Chris D. Geddes, and Russell T. Hill. "Phosphorus sequestration in the form of polyphosphate by microbial symbionts in marine sponges." Proceedings of the National Academy of Sciences 112, no. 14 (February 23, 2015): 4381–86. http://dx.doi.org/10.1073/pnas.1423768112.

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Marine sponges are major habitat-forming organisms in coastal benthic communities and have an ancient origin in evolution history. Here, we report significant accumulation of polyphosphate (polyP) granules in three common sponge species of the Caribbean coral reef. The identity of the polyP granules was confirmed by energy-dispersive spectroscopy (EDS) and by the fluorescence properties of the granules. Microscopy images revealed that a large proportion of microbial cells associated with sponge hosts contained intracellular polyP granules. Cyanobacterial symbionts cultured from sponges were shown to accumulate polyP. We also amplified polyphosphate kinase (ppk) genes from sponge DNA and confirmed that the gene was expressed. Based on these findings, we propose here a potentially important phosphorus (P) sequestration pathway through symbiotic microorganisms of marine sponges. Considering the widespread sponge population and abundant microbial cells associated with them, this pathway is likely to have a significant impact on the P cycle in benthic ecosystems.
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14

Sharp, Koty H., Boreth Eam, D. John Faulkner, and Margo G. Haygood. "Vertical Transmission of Diverse Microbes in the Tropical Sponge Corticium sp." Applied and Environmental Microbiology 73, no. 2 (November 22, 2006): 622–29. http://dx.doi.org/10.1128/aem.01493-06.

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ABSTRACT Sponges are host to extremely diverse bacterial communities, some of which appear to be spatiotemporally stable, though how these consistent associations are assembled and maintained from one sponge generation to the next is not well understood. Here we report that a diverse group of microbes, including both bacteria and archaea, is consistently present in aggregates within embryos of the tropical sponge Corticium sp. The major taxonomic groups represented in bacterial 16S rRNA sequences amplified from the embryos are similar to those previously described in a variety of marine sponges. Three selected bacterial taxa, representing proteobacteria, actinobacteria, and a clade including recently described sponge-associated bacteria, were tested and found to be present in all adult samples tested over a 3-year period and in the embryos throughout development. Specific probes were used in fluorescence in situ hybridization to localize cells of the three types in the embryos and mesohyl. This study confirms the vertical transmission of multiple, phylogenetically diverse microorganisms in a marine sponge, and our findings lay the foundation for future work on exploring vertical transmission of specific, yet diverse, microbial assemblages in marine sponges.
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Paul, Valerie J., Christopher J. Freeman, and Vinayak Agarwal. "Chemical Ecology of Marine Sponges: New Opportunities through “-Omics”." Integrative and Comparative Biology 59, no. 4 (April 27, 2019): 765–76. http://dx.doi.org/10.1093/icb/icz014.

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Abstract The chemical ecology and chemical defenses of sponges have been investigated for decades; consequently, sponges are among the best understood marine organisms in terms of their chemical ecology, from the level of molecules to ecosystems. Thousands of natural products have been isolated and characterized from sponges, and although relatively few of these compounds have been studied for their ecological functions, some are known to serve as chemical defenses against predators, microorganisms, fouling organisms, and other competitors. Sponges are hosts to an exceptional diversity of microorganisms, with almost 40 microbial phyla found in these associations to date. Microbial community composition and abundance are highly variable across host taxa, with a continuum from diverse assemblages of many microbial taxa to those that are dominated by a single microbial group. Microbial communities expand the nutritional repertoire of their hosts by providing access to inorganic and dissolved sources of nutrients. Not only does this continuum of microorganism–sponge associations lead to divergent nutritional characteristics in sponges, these associated microorganisms and symbionts have long been suspected, and are now known, to biosynthesize some of the natural products found in sponges. Modern “omics” tools provide ways to study these sponge–microbe associations that would have been difficult even a decade ago. Metabolomics facilitate comparisons of sponge compounds produced within and among taxa, and metagenomics and metatranscriptomics provide tools to understand the biology of host–microbe associations and the biosynthesis of ecologically relevant natural products. These combinations of ecological, microbiological, metabolomic and genomics tools, and techniques provide unprecedented opportunities to advance sponge biology and chemical ecology across many marine ecosystems.
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Taylor, Michael W., Regina Radax, Doris Steger, and Michael Wagner. "Sponge-Associated Microorganisms: Evolution, Ecology, and Biotechnological Potential." Microbiology and Molecular Biology Reviews 71, no. 2 (June 2007): 295–347. http://dx.doi.org/10.1128/mmbr.00040-06.

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SUMMARY Marine sponges often contain diverse and abundant microbial communities, including bacteria, archaea, microalgae, and fungi. In some cases, these microbial associates comprise as much as 40% of the sponge volume and can contribute significantly to host metabolism (e.g., via photosynthesis or nitrogen fixation). We review in detail the diversity of microbes associated with sponges, including extensive 16S rRNA-based phylogenetic analyses which support the previously suggested existence of a sponge-specific microbiota. These analyses provide a suitable vantage point from which to consider the potential evolutionary and ecological ramifications of these widespread, sponge-specific microorganisms. Subsequently, we examine the ecology of sponge-microbe associations, including the establishment and maintenance of these sometimes intimate partnerships, the varied nature of the interactions (ranging from mutualism to host-pathogen relationships), and the broad-scale patterns of symbiont distribution. The ecological and evolutionary importance of sponge-microbe associations is mirrored by their enormous biotechnological potential: marine sponges are among the animal kingdom's most prolific producers of bioactive metabolites, and in at least some cases, the compounds are of microbial rather than sponge origin. We review the status of this important field, outlining the various approaches (e.g., cultivation, cell separation, and metagenomics) which have been employed to access the chemical wealth of sponge-microbe associations.
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Fallon, Bailey R., and Christopher J. Freeman. "Plastics in Porifera: The occurrence of potential microplastics in marine sponges and seawater from Bocas del Toro, Panamá." PeerJ 9 (July 8, 2021): e11638. http://dx.doi.org/10.7717/peerj.11638.

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Microplastics (MP) are now considered ubiquitous across global aquatic environments. The ingestion of MP by fish and other marine vertebrates is well studied, but the ingestion of MP by marine invertebrates is not. Sponges (Phylum Porifera) are particularly understudied when it comes to MP ingestion, even though they are widely distributed across benthic habitats, can process large volumes of seawater, and can retain small particles within their water filtration systems. This study examines the presence of potential MP (PMP) in wild marine sponges and seawater collected in Bocas del Toro, Panamá. Subsurface seawater and tissue from six common Caribbean sponge species was collected in Saigon Bay, a heavily impacted, shallow-water coral reef. Seawater samples were filtered onto glass fiber filters to retain any PMP present and sponge tissue was digested with bleach, heated and filtered. Filters were examined using fluorescence microscopy to quantify PMP. An average of 107 ± 25 PMP L–1 was detected in seawater from Saigon Bay with particles ranging in size between 10 μm and ~3,000 μm. The number of PMP found in sponge tissue ranged between 6 ± 4 and 169 ± 71 PMP g–1 of dry tissue. Most particles found in sponge samples were very small (10–20 μm), but fibers greater than 5,000 μm were detected. Our results indicate that PMP exists within the tissues of the sponges we studied, but future studies should confirm the presence of MP in sponges using chemical analysis. Most importantly, the discrepancy between low levels of PMP in our sponge samples and high levels in the surrounding seawater highlights the potential for sponges to resist and/or egest MP. Finally, we provide a critical evaluation of our methods to improve their use in future MP work with benthic marine organisms.
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Dat, Ton That Huu, Georg Steinert, Nguyen Thi Kim Cuc, Hauke Smidt, and Detmer Sipkema. "Archaeal and bacterial diversity and community composition from 18 phylogenetically divergent sponge species in Vietnam." PeerJ 6 (June 8, 2018): e4970. http://dx.doi.org/10.7717/peerj.4970.

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Sponge-associated prokaryotic diversity has been studied from a wide range of marine environments across the globe. However, for certain regions, e.g., Vietnam, Thailand, Cambodia, and Singapore, an overview of the sponge-associated prokaryotic communities is still pending. In this study we characterized the prokaryotic communities from 27 specimens, comprising 18 marine sponge species, sampled from the central coastal region of Vietnam. Illumina MiSeq sequencing of 16S ribosomal RNA (rRNA) gene fragments was used to investigate sponge-associated bacterial and archaeal diversity. Overall, 14 bacterial phyla and one archaeal phylum were identified among all 27 samples. The phylumProteobacteriawas present in all sponges and the most prevalent phylum in 15 out of 18 sponge species, albeit with pronounced differences at the class level. In contrast,Chloroflexiwas the most abundant phylum inHalichondriasp., whereasSpirastrellasp. andDactylospongiasp. were dominated byActinobacteria. Several bacterial phyla such asAcidobacteria, Actinobacteria, Bacteroidetes, Chloroflexi, Deferribacteres, Gemmatimonadetes, andNitrospiraewere found in two-thirds of the sponge species. Moreover, the phylumThaumarchaeota(Archaea), which is known to comprise nitrifying archaea, was highly abundant among the majority of the 18 investigated sponge species. Altogether, this study demonstrates that the diversity of prokaryotic communities associated with Vietnamese sponges is comparable to sponge-prokaryotic assemblages from well-documented regions. Furthermore, the phylogenetically divergent sponges hosted species-specific prokaryotic communities, thus demonstrating the influence of host identity on the composition and diversity of the associated communities. Therefore, this high-throughput 16S rRNA gene amplicon analysis of Vietnamese sponge-prokaryotic communities provides a foundation for future studies on sponge symbiont function and sponge-derived bioactive compounds from this region.
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Anteneh, Yitayal S., Melissa H. Brown, and Christopher M. M. Franco. "Characterization of a Halotolerant Fungus from a Marine Sponge." BioMed Research International 2019 (November 23, 2019): 1–9. http://dx.doi.org/10.1155/2019/3456164.

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Introduction. Marine sponges have established symbiotic interactions with a large number of microorganisms including fungi. Most of the studies so far have focussed on the characterization of sponge-associated bacteria and archaea with only a few reports on sponge-associated fungi. During the isolation and characterization of bacteria from marine sponges of South Australia, we observed multiple types of fungi. One isolate in particular was selected for further investigation due to its unusually large size and being chromogenic. Here, we report on the investigations on the physical, morphological, chemical, and genotypic properties of this yeast-like fungus. Methods and Materials. Sponge samples were collected from South Australian marine environments, and microbes were isolated using different isolation media under various incubation conditions. Microbial isolates were identified on the basis of morphology, staining characteristics, and their 16S rRNA or ITS/28S rRNA gene sequences. Results. Twelve types of yeast and fungal isolates were detected together with other bacteria and one of these fungi measured up to 35 μm in diameter with a unique chromogen compared to other fungi. Depending on the medium type, this unique fungal isolate appeared as yeast-like fungi with different morphological forms. The isolate can ferment and assimilate nearly all of the tested carbohydrates. Furthermore, it tolerated a high concentration of salt (up to 25%) and a range of pH and temperature. ITS and 28S rRNA gene sequencing revealed a sequence similarity of 93% and 98%, respectively, with the closest genera of Eupenidiella, Hortaea, and Stenella. Conclusions. On the basis of its peculiar morphology, size, and genetic data, this yeast-like fungus possibly constitutes a new genus and the name Magnuscella marinae, gen nov., sp. nov., is proposed. This study is the first of its kind for the complete characterization of a yeast-like fungus from marine sponges. This novel isolate developed a symbiotic interaction with living hosts, which was not observed with other reported closest genera (they exist in a saprophytic relationship). The observed unique size and morphology may favour this new isolate to establish symbiotic interactions with living hosts.
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Cheng, Mei-Mei, Xu-Li Tang, Yan-Ting Sun, Dong-Yang Song, Yu-Jing Cheng, Hui Liu, Ping-Lin Li, and Guo-Qiang Li. "Biological and Chemical Diversity of Marine Sponge-Derived Microorganisms over the Last Two Decades from 1998 to 2017." Molecules 25, no. 4 (February 14, 2020): 853. http://dx.doi.org/10.3390/molecules25040853.

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Marine sponges are well known as rich sources of biologically natural products. Growing evidence indicates that sponges harbor a wealth of microorganisms in their bodies, which are likely to be the true producers of bioactive secondary metabolites. In order to promote the study of natural product chemistry and explore the relationship between microorganisms and their sponge hosts, in this review, we give a comprehensive overview of the structures, sources, and activities of the 774 new marine natural products from sponge-derived microorganisms described over the last two decades from 1998 to 2017.
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Konstantinou, Despoina, Rafael V. Popin, David P. Fewer, Kaarina Sivonen, and Spyros Gkelis. "Genome Reduction and Secondary Metabolism of the Marine Sponge-Associated Cyanobacterium Leptothoe." Marine Drugs 19, no. 6 (May 24, 2021): 298. http://dx.doi.org/10.3390/md19060298.

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Sponges form symbiotic relationships with diverse and abundant microbial communities. Cyanobacteria are among the most important members of the microbial communities that are associated with sponges. Here, we performed a genus-wide comparative genomic analysis of the newly described marine benthic cyanobacterial genus Leptothoe (Synechococcales). We obtained draft genomes from Le. kymatousa TAU-MAC 1615 and Le. spongobia TAU-MAC 1115, isolated from marine sponges. We identified five additional Leptothoe genomes, host-associated or free-living, using a phylogenomic approach, and the comparison of all genomes showed that the sponge-associated strains display features of a symbiotic lifestyle. Le. kymatousa and Le. spongobia have undergone genome reduction; they harbored considerably fewer genes encoding for (i) cofactors, vitamins, prosthetic groups, pigments, proteins, and amino acid biosynthesis; (ii) DNA repair; (iii) antioxidant enzymes; and (iv) biosynthesis of capsular and extracellular polysaccharides. They have also lost several genes related to chemotaxis and motility. Eukaryotic-like proteins, such as ankyrin repeats, playing important roles in sponge-symbiont interactions, were identified in sponge-associated Leptothoe genomes. The sponge-associated Leptothoe stains harbored biosynthetic gene clusters encoding novel natural products despite genome reduction. Comparisons of the biosynthetic capacities of Leptothoe with chemically rich cyanobacteria revealed that Leptothoe is another promising marine cyanobacterium for the biosynthesis of novel natural products.
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Pascelli, Cecília, Patrick W. Laffy, Marija Kupresanin, Timothy Ravasi, and Nicole S. Webster. "Morphological characterization of virus-like particles in coral reef sponges." PeerJ 6 (October 17, 2018): e5625. http://dx.doi.org/10.7717/peerj.5625.

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Marine sponges host complex microbial consortia that vary in their abundance, diversity and stability amongst host species. While our understanding of sponge-microbe interactions has dramatically increased over the past decade, little is known about how sponges and their microbial symbionts interact with viruses, the most abundant entities in the ocean. In this study, we employed three transmission electron microscopy (TEM) preparation methods to provide the first comprehensive morphological assessment of sponge-associated viruses. The combined approaches revealed 50 different morphologies of viral-like particles (VLPs) represented across the different sponge species. VLPs were visualized within sponge cells, within the sponge extracellular mesohyl matrix, on the sponge ectoderm and within sponge-associated microbes. Non-enveloped, non-tailed icosahedral VLPs were the most commonly observed morphotypes, although tailed bacteriophage, brick-shaped, geminate and filamentous VLPs were also detected. Visualization of sponge-associated viruses using TEM has confirmed that sponges harbor not only diverse communities of microorganisms but also diverse communities of viruses.
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Beazley, Lindsay I., Ellen L. Kenchington, Francisco Javier Murillo, and María del Mar Sacau. "Deep-sea sponge grounds enhance diversity and abundance of epibenthic megafauna in the Northwest Atlantic." ICES Journal of Marine Science 70, no. 7 (August 16, 2013): 1471–90. http://dx.doi.org/10.1093/icesjms/fst124.

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AbstractBeazley, L. I., Kenchington E. L., Murillo, F. J., and Sacau, M. 2013. Deep-sea sponge grounds enhance diversity and abundance of epibenthic megafauna in the Northwest Atlantic. – ICES Journal of Marine Science, 70: . The influence of structure-forming deep-water sponge grounds on the composition, diversity, and abundance of the local epibenthic megafaunal community of the Flemish Pass area, Northwest Atlantic was statistically assessed. These habitats are considered vulnerable marine ecosystems and, therefore, warrant conservation measures to protect them from bottom fishing activities. The epibenthic megafauna were quantified from four photographic transects, three of which were located on the western slope of the Flemish Cap with an overall depth range of 444–940 m, and the fourth in the southern Flemish Pass between 1328 and 1411 m. We observed a diverse megafaunal community dominated by large numbers of ophiuroids and sponges. On the slope of the Flemish Cap, sponge grounds were dominated by axinellid and polymastid sponges, while the deeper sponge ground in the southern Flemish Pass was formed mainly by geodiids and Asconema sp. The presence of structure-forming sponges was associated with a higher biodiversity and abundance of associated megafauna compared with non-sponge habitat. The composition of megafauna significantly differed between sponge grounds and non-sponge grounds and also between different sponge morphologies. Surface chlorophyll a and near-bottom salinity were important environmental determinants in generalized linear models of megafaunal species richness and abundance.
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24

Erwin, Patrick M., Lucía Pita, Susanna López-Legentil, and Xavier Turon. "Stability of Sponge-Associated Bacteria over Large Seasonal Shifts in Temperature and Irradiance." Applied and Environmental Microbiology 78, no. 20 (August 10, 2012): 7358–68. http://dx.doi.org/10.1128/aem.02035-12.

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ABSTRACTComplex microbiomes reside in marine sponges and consist of diverse microbial taxa, including functional guilds that may contribute to host metabolism and coastal marine nutrient cycles. Our understanding of these symbiotic systems is based primarily on static accounts of sponge microbiota, while their temporal dynamics across seasonal cycles remain largely unknown. Here, we investigated temporal variation in bacterial symbionts of three sympatric sponges (Irciniaspp.) over 1.5 years in the northwestern (NW) Mediterranean Sea, using replicated terminal restriction fragment length polymorphism (T-RFLP) and clone library analyses of bacterial 16S rRNA gene sequences. Bacterial symbionts inIrciniaspp. exhibited host species-specific structure and remarkable stability throughout the monitoring period, despite large fluctuations in temperature and irradiance. In contrast, seawater bacteria exhibited clear seasonal shifts in community structure, indicating that different ecological constraints act on free-living and on symbiotic marine bacteria. Symbiont profiles were dominated by persistent, sponge-specific bacterial taxa, notably affiliated with phylogenetic lineages capable of photosynthesis, nitrite oxidation, and sulfate reduction. Variability in the sponge microbiota was restricted to rare symbionts and occurred most prominently in warmer seasons, coincident with elevated thermal regimes. Seasonal stability of the sponge microbiota supports the hypothesis of host-specific, stable associations between bacteria and sponges. Further, the core symbiont profiles revealed in this study provide an empirical baseline for diagnosing abnormal shifts in symbiont communities. Considering that these sponges have suffered recent, episodic mass mortalities related to thermal stresses, this study contributes to the development of model sponge-microbe symbioses for assessing the link between symbiont fluctuations and host health.
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HADI, TRI ARYONO, MUHAMMAD HAFIZT, HADIYANTO HADIYANTO, AGUS BUDIYANTO, and RIKOH MANOGAR SIRINGORINGO. "Shallow water sponges along the south coast of Java, Indonesia." Biodiversitas Journal of Biological Diversity 19, no. 2 (March 1, 2018): 485–93. http://dx.doi.org/10.13057/biodiv/d190223.

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Hadi TA, Hafizt M, Hadiyanto, Budiyanto A, Siringoringo RM. 2018. Shallow water sponges along the south coast of Java, Indonesia. Biodiversitas 19: 485-493. Sponges are the most diverse benthic filter feeders, occupying many different types of marine habitat. The south coast of Java is one such marine habitat, very exposed to the open sea. This study investigated the sponge diversity as well as their morphological characters across the south coast of Java. The observations were carried out from 2011 to 2016 in four different locations, including Pamang Peuk, Gunungkidul, Prigi Bay and Bayuwangi. The study found 96 sponge species, from 15 orders, and described them in terms of nine morphological characters. The most common species included Spheciospongia inconstans, Stylissa massa, Callyspongia sp. and Cinachyrella australiensis, while the most common growth forms were massive and encrusting, accounting respectively for 34.4% and 28.1% of the total number of species. There was a significant difference in the number of species found between sub-tidal and intertidal habitats; subtidal sponges were approximately 50% more diverse than intertidal sponges. Apart from the habitat types, the number of sponges varied in relation to the longitude; east Java had more sponge species with more variations in morphology compared to central and west Java. Encrusting and globular growth forms were the most common characteristics of intertidal sponges in west and central Java, while other growth forms comprised the diverse characteristics of the subtidal sponges in the east Java. This baseline information is essential for management of marine biodiversity hotspots in taking decisions for marine life conservation, because the global trajectory of marine habitat degradation is predicted to rise.
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Deutsch, Jessica M., Madison O. Green, Priyanka Akavaram, Ashleigh C. Davis, Sarth S. Diskalkar, Isabelle A. Du Plessis, Hannah A. Fallon, et al. "Limited Metabolomic Overlap between Commensal Bacteria and Marine Sponge Holobionts Revealed by Large Scale Culturing and Mass Spectrometry-Based Metabolomics: An Undergraduate Laboratory Pedagogical Effort at Georgia Tech." Marine Drugs 21, no. 1 (January 14, 2023): 53. http://dx.doi.org/10.3390/md21010053.

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Sponges are the richest source of bioactive organic small molecules, referred to as natural products, in the marine environment. It is well established that laboratory culturing-resistant symbiotic bacteria residing within the eukaryotic sponge host matrix often synthesize the natural products that are detected in the sponge tissue extracts. However, the contributions of the culturing-amenable commensal bacteria that are also associated with the sponge host to the overall metabolome of the sponge holobiont are not well defined. In this study, we cultured a large library of bacteria from three marine sponges commonly found in the Florida Keys. Metabolomes of isolated bacterial strains and that of the sponge holobiont were compared using mass spectrometry to reveal minimal metabolomic overlap between commensal bacteria and the sponge hosts. We also find that the phylogenetic overlap between cultured commensal bacteria and that of the sponge microbiome is minimal. Despite these observations, the commensal bacteria were found to be a rich resource for novel natural product discovery. Mass spectrometry-based metabolomics provided structural insights into these cryptic natural products. Pedagogic innovation in the form of laboratory curricula development is described which provided undergraduate students with hands-on instruction in microbiology and natural product discovery using metabolomic data mining strategies.
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27

Butina, Tatyana V., Ivan S. Petrushin, Igor V. Khanaev, and Yurij S. Bukin. "Metagenomic Assessment of DNA Viral Diversity in Freshwater Sponges, Baikalospongia bacillifera." Microorganisms 10, no. 2 (February 21, 2022): 480. http://dx.doi.org/10.3390/microorganisms10020480.

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Sponges (type Porifera) are multicellular organisms that give shelter to a variety of microorganisms: fungi, algae, archaea, bacteria, and viruses. The studies concerning the composition of viral communities in sponges have appeared rather recently, and the diversity and role of viruses in sponge holobionts remain largely undisclosed. In this study, we assessed the diversity of DNA viruses in the associated community of the Baikal endemic sponge, Baikalospongia bacillifera, using a metagenomic approach, and compared the virome data from samples of sponges and Baikal water (control sample). Significant differences in terms of taxonomy, putative host range of identified scaffolds, and functional annotation of predicted viral proteins were revealed in viromes of sponge B. bacillifera and the Baikal water. This is the evidence in favor of specificity of viral communities in sponges. The diversity shift of viral communities in a diseased specimen, in comparison with a visually healthy sponge, probably reflects the changes in the composition of microbial communities in affected sponges. We identified many viral genes encoding the proteins with metabolic functions; therefore, viruses in Baikal sponges regulate the number and diversity of their associated community, and also take a part in the vital activity of the holobiont, and this is especially significant in the case of damage (or disease) of these organisms in unfavorable conditions. When comparing the Baikal viromes with similar datasets of marine sponge (Ianthella basta), in addition to significant differences in the taxonomic and functional composition of viral communities, we revealed common scaffolds/virotypes in the cross-assembly of reads, which may indicate the presence of some closely related sponge-specific viruses in marine and freshwater sponges.
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28

Rosyantari, A., ES Prasedya, BTK Ilhami, NWR Martyasari, H. Padmi, AS Abidin, Y. Ambana, IAP Kirana, and AL Sunarwidhi. "Total Phenolic Content (TPC), Total Flavonoid Content (TFC) and Antioxidants Activity of Marine Sponge Stylissa flabelliformis Ethanol Extract." IOP Conference Series: Earth and Environmental Science 913, no. 1 (November 1, 2021): 012109. http://dx.doi.org/10.1088/1755-1315/913/1/012109.

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Abstract Marine sponge Stylissa flabelliformis is a marine sponge species that is widely found in Indonesia. Marine sponges have been proven to have pharmacological activities including wound healing, cytotoxicity and antimicrobial activity. All these activities are related to its antioxidant potential. Antioxidants are important for human health due to its ability to protect cell damage caused by free radicals. The aim of this research was to study the antioxidant activity of marine sponge (Stylissa flabelliformis) and to observe the phytochemical compound of the marine sponge such as the phenolic and flavonoid content. Extraction was performed using cold maceration with 96% ethanol solvent and continued by rotary evaporator to get the concentrated extract. Antioxidants activity was analysed using DPPH (2,2-diphenyl-1-picrylhydrazyl) method, which examines the inhibitory concentration (IC50) of the ethanol extract. Total phenolic content (TPC) was examined using Gallic acid as the standard, while total flavonoid content (TFC) was examined using quercetin as the standard. The result showed a concentration-dependent antiradical activity by reduction of DPPH with an IC50 value 2000 µg/mL. Total phenolic content was 152,67 mg GAE/g, while the total flavonoid content was 155,79 mg QE/g.
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Esposito, Roberta, Nadia Ruocco, Thomas Viel, Serena Federico, Valerio Zupo, and Maria Costantini. "Sponges and Their Symbionts as a Source of Valuable Compounds in Cosmeceutical Field." Marine Drugs 19, no. 8 (August 2, 2021): 444. http://dx.doi.org/10.3390/md19080444.

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In the last decades, the marine environment was discovered as a huge reservoir of novel bioactive compounds, useful for medicinal treatments improving human health and well-being. Among several marine organisms exhibiting biotechnological potential, sponges were highlighted as one of the most interesting phyla according to a wide literature describing new molecules every year. Not surprisingly, the first marine drugs approved for medical purposes were isolated from a marine sponge and are now used as anti-cancer and anti-viral agents. In most cases, experimental evidence reported that very often associated and/or symbiotic communities produced these bioactive compounds for a mutual benefit. Nowadays, beauty treatments are formulated taking advantage of the beneficial properties exerted by marine novel compounds. In fact, several biological activities suitable for cosmetic treatments were recorded, such as anti-oxidant, anti-aging, skin whitening, and emulsifying activities, among others. Here, we collected and discussed several scientific contributions reporting the cosmeceutical potential of marine sponge symbionts, which were exclusively represented by fungi and bacteria. Bioactive compounds specifically indicated as products of the sponge metabolism were also included. However, the origin of sponge metabolites is dubious, and the role of the associated biota cannot be excluded, considering that the isolation of symbionts represents a hard challenge due to their uncultivable features.
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Wantah, Efra D. L., R. E. P. Mangindaan, and Fitje Losung. "Test of Larvacide Activity from Some Sponge Extracts to Aedes aegypti Larvae." JURNAL ILMIAH PLATAX 6, no. 2 (July 31, 2018): 83. http://dx.doi.org/10.35800/jip.6.2.2018.20637.

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Marine organisms have been known produce certain compounds those could lead for medicine purposes. Sponges are one and the most studied for this aim. oneof the important biological activities which expected from sponge are larvacide activity. The aims this research was to test the larvacide activity aagainst Aedes aegypti larvae from some of sponge extract. Sponge samples were taken from Malalayang Waters, (N 01 ° 27'37 "E 124 ° 47'30") on November 2014 with the depth varies from 2-15 m with SCUBA. The extraction, preparation of the larvae and activity testing was performed on Biomolecular and Marine Pharmacy Laboratory Faculty Fisheries and Marine Science. The sponge samples were cutted and soaked in 95% Ethanol for over night with 3 repetitions to obtain ethanolic extracts. The extract were filtered and evaporated using freeze dryer then tested onto 10 instars 3 instars m larvae that had been previously maintained. the test was made in triplowith 24 hours observation. abate was used as positive control while negative control clean water was used.The test results showed that of 11 Sponge tested, 10 species showed larvacidal activity and marine sponge extract Tedania sp. has the highest activity compared to 9 extracts. As a suggestion of this research the further purification of Tedania sp. extract is needed to know the structure of active compound.Keywords: Aedes aegypti, Larvacide, Sponge extractABSTRAKOrganisme laut yang dapat dikembangkan menjadi bahan sediaan obat antara lain sponge, dan merupakan salah satu organisme laut yang banyak diteliti. Beberapa aktivitas biologis penting yang diharapkan dari ekstrak sponge salah satunya adalah aktivitas larvasida. Penelitian ini bertujuan untuk menguji aktivitas larvasida nyamuk Aedes aegypti dari beberapa ekstrak Sponge. Sampel sponge diambil di perairan Malalayang, tepatnya di koordinat N 01°27’37” E 124°47’30” pada bulan November 2014 di kedalaman 2-15 m. Sedangkan untuk tahap ekstraksi, penyiapan larva uji dan pengujian aktivitas larvasida di lakukan di laboratorium Biomolekular dan Farmasitika Laut program studi Ilmu Kelautan, FPIK UNSRAT. Dalam penelitian yang dilakukan, sampel diambil di perairan menggunakan peralatan SCUBA. Setelah itu diekstrak dengan larutan etanol 95% dan direndam selama 24 jam dan dilakukan 3 kali pengulagan untuk mendapatkan ekstrak etanolik. Sampel dikeringkan dengan menggunakan alat freeze dryer kemudian diujikan ke 10 ekor larva nyamuk fase instar 3 yang telah dipelihara sebelumnya. Pengujian dilakukan sebanyak 3 kali pengulangan dengan lama pengamatan 24 jam pengamatan. Sebagai kontrol positif digunakan bubuk abate yang biasa dijual di pasaran sedangkan kontrol negative atau tanpa perlakuan digunakan air bersih. Data hasil pengamatan diolah menggunakan Microsoft excel.Hasil pengujian menunjukkan bahwa Dari 11 Sponge yang diuji, 10 jenis menunjukan aktivitas larvasida dengan persentase mortalitas yang bervariasi dan ekstrak sponge laut Tedania sp. memiliki aktivitas tertinggi dibandingkan dengan 10 jenis ekstrak sponge lain dalam pengujian. Sebagai saran dalam penelitian ini yaitu Perlu dilakukan pemurnian lanjut ekstrak lebih lanjut dari ekstrak sponge Tedania sp. yaitu ke tahap partisi dan Perlu adanya variasi konsentrasi dalam pengujian.Kata Kunci : Aedes aegypti, Larvasida, ekstrak Spong
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Ismet, Meutia Samira, Dietriech G. Bengen, Ocky Karna Radjasa, and Mujizat Kawaroe. "COMPOSITION AND ANTIBACTERIAL ACTIVITIES OF MARINE SPONGES FROM DIFFERENT SEAGRASS ECOSYSTEMS IN KEPULAUAN SERIBU WATERS, JAKARTA." Jurnal Ilmu dan Teknologi Kelautan Tropis 8, no. 2 (April 6, 2017): 729–45. http://dx.doi.org/10.29244/jitkt.v8i2.15838.

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A seagrass ecosystem has high productivity that supports many species of associated invertebrates, including sponges. However, seagrass beds with different habitat condition, including seagrass species composition and architectural morphotypes could affect the associative sponge in the ecosystem. This study is aimed to find out about sponge species composition in different seagrass beds. The observation was conducted in two seagrass ecosystems at the east (site 1) and at the southeast (site 2) of Pramuka Island, Kepulauan Seribu, near Jakarta Bay, Indonesia. The Belt Transect was used to assess the density of sponges on the seagrass ecosystem, which was placed parallel to the coastline. The sponges species has higher number at the east than the southeast, with both sites was dominated by Spirastrella sp. and Agelas conifera. Correspondence Analysis (CA) results showed that sponges community has close interaction with seagrass abundance especially Cymodocea rotundata and Enhalus acoroides and architectural characteristic (patchily or continues meadows). Antibacterial assay of sponges tissue showed that only 7 sponge species has activity against targeting bacteria. The CA results also showed that sponge antibacterial activity was not correlated with seagrass species, with low bactericide and bacteriastatic activities. The implication of this result showed that sponges community can grow up at seagrass ecosystem eventhough their potential secondary metabolite activities is very low probably due to lack of stimulus mechanisms in the environment.
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32

Mortimer, C., M. Dunn, A. Haris, J. Jompa, and J. Bell. "Estimates of sponge consumption rates on an Indo-Pacific reef." Marine Ecology Progress Series 672 (August 19, 2021): 123–40. http://dx.doi.org/10.3354/meps13786.

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Determining predator diets is essential for understanding the strength of top-down processes and how they cascade through food webs. This is especially important for sponges, key members of benthic communities, whose dominance has increased in recent years on some coral reefs. However, the diversity of spongivorous fishes and the sponges they consume are relatively unknown. Here, we estimated sponge consumption by spongivorous fishes in the Wakatobi Marine National Park, Indonesia. We deployed cameras to identify fish biting at the dominant reef sponge Xestospongia spp. and then used gut content analysis and fish abundance estimates to quantify sponge consumption. In total, 33 species from 10 families of reef fish were identified taking bites from Xestospongia spp.; however, the 2 most prolific sponge-grazers, Ctenochaetus binotatus and Chaetodon kleinii, had no sponge in their guts, showing that for some fish, bites on sponge surfaces are not reliable evidence of sponge consumption. Gut contents indicated that Pygoplites diacanthus was an obligate spongivore, while Pomacanthus imperator, P. xanthometopon, Zanclus cornutus and Siganus punctatus regularly consumed sponges. Sponge consumption by these 5 spongivores was estimated at 46.6 ± 18.3 g sponge 1000 m-2 d-1. Molecular approaches developed to sequence the 18S gene for sponges consumed by angelfishes led to the successful amplification of 14 consumed sponges representing 6 orders of Porifera. We provide the first estimate of sponge consumption in the Indo-Pacific and are the first to successfully sequence partially digested sponges from fish stomachs, identifying several sponges previously unknown to be consumed by spongivores.
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Keyzers, Robert A., Peter T. Northcote, and Michael V. Berridge. "Clathriol B, a New 14β Marine Sterol from the New Zealand Sponge Clathria lissosclera." Australian Journal of Chemistry 56, no. 4 (2003): 279. http://dx.doi.org/10.1071/ch02167.

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A new anti-inflammatory sterol, clathriol B (1.3 mg), was isolated from the New Zealand marine sponge Clathria lissosclera collected at the Three Kings Islands. Clathriol B possesses the unusual 14β stereochemistry, a structural feature that occurs naturally only in marine sponges.
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34

Vallmann, K., C. Kivisild, A. Lopp, H. T. Rapp, and M. Kelve. "The stress protein HSP70 from the marine sponge Thenea muricata." Journal of the Marine Biological Association of the United Kingdom 96, no. 2 (January 13, 2016): 573–81. http://dx.doi.org/10.1017/s0025315415002234.

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The members of the heat shock protein 70 ( HSP70) family are among the most conserved and widely studied stress proteins. The transcription and translation levels of HSP70 genes have also been studied in several marine and freshwater sponges as molecular markers to characterize the response of sponges to various types of physiological or environmental stress conditions. Furthermore, HSP70 protein sequences have been used in phylogenetic analysis of prokaryotes and eukaryotes. In this study, the expression of HSP70 genes in the marine sponge Thenea muricata during long-term cultivation under laboratory conditions was described at the protein and mRNA levels. Though there are many studies about distribution and morphology of T. muricata, few biochemical and molecular data can be found in the literature. HSP70 gene data for several sponge species have been deposited in the NCBI database, however, those for T. muricata are not available. Therefore, HSP70 genes were characterized in this sponge. Several proteins of the HSP70 superfamily which might be induced by stress, were present in T. muricata.
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Fieseler, Lars, Matthias Horn, Michael Wagner, and Ute Hentschel. "Discovery of the Novel Candidate Phylum “Poribacteria” in Marine Sponges." Applied and Environmental Microbiology 70, no. 6 (June 2004): 3724–32. http://dx.doi.org/10.1128/aem.70.6.3724-3732.2004.

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ABSTRACT Marine sponges (Porifera) harbor large amounts of commensal microbial communities within the sponge mesohyl. We employed 16S rRNA gene library construction using specific PCR primers to provide insights into the phylogenetic identity of an abundant sponge-associated bacterium that is morphologically characterized by the presence of a membrane-bound nucleoid. In this study, we report the presence of a previously unrecognized evolutionary lineage branching deeply in the domain Bacteria that is moderately related to the Planctomycetes, Verrucomicrobia, and Chlamydia lines of decent. Because members of this lineage showed <75% 16S rRNA gene sequence similarity to known bacterial phyla, we suggest the status of a new candidate phylum, named “Poribacteria”, to acknowledge the affiliation of the new bacterium with sponges. The affiliation of the morphologically conspicuous sponge bacterium with the novel phylogenetic lineage was confirmed by fluorescence in situ hybridization with newly designed probes targeting different sites of the poribacterial 16S rRNA. Consistent with electron microscopic observations of cell compartmentalization, the fluorescence signals appeared in a ring-shaped manner. PCR screening with “Poribacteria”-specific primers gave positive results for several other sponge species, while samples taken from the environment (seawater, sediments, and a filter-feeding tunicate) were PCR negative. In addition to a report for Planctomycetes, this is the second report of cell compartmentalization, a feature that was considered exclusive to the eukaryotic domain, in prokaryotes.
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Najafi, Akram, Maryam Moradinasab, Mohammad Seyedabadi, Mohammad A. Haghighi, and Iraj Nabipour. "First Molecular Identification of Symbiotic Archaea in a Sponge Collected from the Persian Gulf, Iran." Open Microbiology Journal 12, no. 1 (October 17, 2018): 323–32. http://dx.doi.org/10.2174/1874285801812010323.

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Background: Marine sponges are associated with numerically vast and phylogenetically diverse microbial communities at different geographical locations. However, little is known about the archaeal diversity of sponges in the Persian Gulf. The present study was aimed to identify the symbiotic archaea with a sponge species gathered from the Persian Gulf, Iran. Methods: Sponge sample was collected from a depth of 3 m offshore Bushehr, Persian Gulf, Iran. Metagenomic DNA was extracted using a hexadecyl trimethyl ammonium bromide (CTAB) method. The COI mtDNA marker was used for molecular taxonomy identification of sponge sample. Also, symbiotic archaea were identified using the culture-independent analysis of the 16S rRNA gene and PCR- cloning. Results: In this study, analysis of multilocus DNA marker and morphological characteristics revealed that the sponge species belonged to Chondrilla australiensis isolate PG_BU4. PCR cloning and sequencing showed that all of the sequences of archaeal 16S rRNA gene libraries clustered into the uncultured archaeal group. Conclusion: The present study is the first report of the presence of the genus of Chondrilla in the Persian Gulf. Traditional taxonomy methods, when used along with molecular techniques, could play a significant role in the accurate taxonomy of sponges. Also, the uncultured archaea may promise a potential source for bioactive compounds. Further functional studies are needed to explore the role of the sponge-associated uncultured archaea as a part of the marine symbiosis.
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37

ALMEIDA, ANA C. S., FACELUCIA B. C. SOUZA, CARLA MENEGOLA, and LEANDRO M. VIEIRA. "Diversity of marine bryozoans inhabiting demosponges in northeastern Brazil." Zootaxa 4290, no. 2 (July 7, 2017): 281. http://dx.doi.org/10.11646/zootaxa.4290.2.3.

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As primary or obligate sessile organisms, bryozoans depend upon a substratum resource that affects their abundance, distribution and diversity. These animals can colonize virtually any type of substratum, including other organisms and artificial structures. Associations between bryozoans and sponges are commonly reported in the literature, but there are few studies discussing the association between these two taxa in detail. Here we present data on the bryozoan community found on shallow-water sponges from Bahia coast, northeastern Brazil, including their taxonomic status, colony form and adaptative structures utilized by these bryozoans to grow on sponges. Twenty-one bryozoan species were found attached to the surface of sixteen species of sponges. Five new species of cheilostome bryozoans are described. A total of 105 colonies were studied and most of them are erect delicate branching (44 colonies) and encrusting patches (34 colonies). The majority of bryozoan colonies were attached to the surface of rugose-textured sponges (67 colonies; 61%). This suggests that bryozoans are more likely to settle on irregular and rough surfaces. Patches colonies were mainly attached to the portion of the sponge that was in contact with the seabed, and spot colonies were particularly found in spatial refuges, showing the preference of larvae to settle on shaded and less exposed substrata. Most erect bryozoans were attached to the lateral sponge surface, other colonies grew on the underside and few on the upper surface of the sponges. These colonies were attached either using anchoring rhizoids, rigid bases, or stolons. The bryozoan species and genera reported here are common in northeastern Brazil and considered generalists in terms of larval settlement requirements. The bryozoan-sponge association studied is considered a non-obligatory commensalism (inquilinism).
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38

Di Cesare Mannelli, Lorenzo, Fortunato Palma Esposito, Enrico Sangiovanni, Ester Pagano, Carmen Mannucci, Beatrice Polini, Carla Ghelardini, et al. "Pharmacological Activities of Extracts and Compounds Isolated from Mediterranean Sponge Sources." Pharmaceuticals 14, no. 12 (December 18, 2021): 1329. http://dx.doi.org/10.3390/ph14121329.

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Marine pharmacology is an exciting and growing discipline that blends blue biotechnology and natural compound pharmacology together. Several sea-derived compounds that are approved on the pharmaceutical market were discovered in sponges, marine organisms that are particularly rich in bioactive metabolites. This paper was specifically aimed at reviewing the pharmacological activities of extracts or purified compounds from marine sponges that were collected in the Mediterranean Sea, one of the most biodiverse marine habitats, filling the gap in the literature about the research of natural products from this geographical area. Findings regarding different Mediterranean sponge species were individuated, reporting consistent evidence of efficacy mainly against cancer, infections, inflammatory, and neurological disorders. The sustainable exploitation of Mediterranean sponges as pharmaceutical sources is strongly encouraged to discover new compounds.
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39

Anteneh, Yitayal S., Qi Yang, Melissa H. Brown, and Christopher M. M. Franco. "Factors affecting the isolation and diversity of marine sponge-associated bacteria." Applied Microbiology and Biotechnology 106, no. 4 (February 2022): 1729–44. http://dx.doi.org/10.1007/s00253-022-11791-8.

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Abstract Marine sponges are an ideal source for isolating as yet undiscovered microorganisms with some sponges having about 50% of their biomass composed of microbial symbionts. This study used a variety of approaches to investigate the culturable diversity of the sponge-associated bacterial community from samples collected from the South Australian marine environment. Twelve sponge samples were selected from two sites and their bacterial population cultivated using seven different agar media at two temperatures and three oxygen levels over 3 months. These isolates were identified using microscopic, macroscopic, and 16S rRNA gene analysis. A total of 1234 bacterial colonies were isolated which consisted of four phyla: Actinobacteria, Firmicutes, Proteobacteria, and Bacteroidetes, containing 21 genera. The diversity of the bacterial population was demonstrated to be influenced by the type of isolation medium, length of the incubation period and temperature, sponge type, and oxygen level. The findings of this study showed that marine sponges of South Australia can yield considerable bacterial culturable diversity if a comprehensive isolation strategy is implemented. Two sponges, with the highest and the lowest diversity of culturable isolates, were examined using next-generation sequencing to better profile the bacterial population. A marked difference in terms of phyla and genera was observed using culture-based and culture-independent approaches. This observed variation displays the importance of utilizing both methods to reflect a more complete picture of the microbial population of marine sponges. Key points Improved bacterial diversity due to long incubations, 2 temperatures, and 3 oxygen levels. Isolates identified by morphology, restriction digests, and 16S rRNA gene sequencing. At least 70% of culturable genera were not revealed by NGS methods.
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40

Busch, Kathrin, Lindsay Beazley, Ellen Kenchington, Frederick Whoriskey, Beate M. Slaby, and Ute Hentschel. "Microbial diversity of the glass sponge Vazella pourtalesii in response to anthropogenic activities." Conservation Genetics 21, no. 6 (August 24, 2020): 1001–10. http://dx.doi.org/10.1007/s10592-020-01305-2.

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Abstract Establishment of adequate conservation areas represents a challenging but crucial task in the conservation of genetic diversity and biological variability. Anthropogenic pressures on marine ecosystems and organisms are steadily increasing. Whether and to what extent these pressures influence marine genetic biodiversity is only starting to be revealed. Using 16S rRNA gene amplicon sequencing, we analysed the microbial community structure of 33 individuals of the habitat-forming glass sponge Vazella pourtalesii, as well as reference seawater, sediment, and biofilm samples. We assessed how two anthropogenic impacts, i.e. habitat destruction by trawling and artificial substrate provision (moorings made of composite plastic), correspond with in situ V. pourtalesii microbiome variability. In addition, we evaluated the role of two bottom fishery closures in preserving sponge-associated microbial diversity on the Scotian Shelf, Canada. Our results illustrate that V. pourtalesii sponges collected from protected sites within fishery closures contained distinct and taxonomically largely novel microbial communities. At the trawled site we recorded significant quantitative differences in distinct microbial phyla, such as a reduction in Nitrospinae in the four sponges from this site and the environmental references. Individuals of V. pourtalesii growing on the mooring were significantly enriched in Bacteroidetes, Verrucomicrobia and Cyanobacteria in comparison to sponge individuals growing on the natural seabed. Due to a concomitant enrichment of these taxa in the mooring biofilm, we propose that biofilms on artificial substrates may ‘prime’ sponge-associated microbial communities when small sponges settle on such substrates. These observations likely have relevant management implications when considering the increase of artificial substrates in the marine environment, e.g., marine litter, off-shore wind parks, and petroleum platforms.
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41

Anteneh, Yitayal S., Qi Yang, Melissa H. Brown, and Christopher M. M. Franco. "Antimicrobial Activities of Marine Sponge-Associated Bacteria." Microorganisms 9, no. 1 (January 14, 2021): 171. http://dx.doi.org/10.3390/microorganisms9010171.

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The misuse and overuse of antibiotics have led to the emergence of multidrug-resistant microorganisms, which decreases the chance of treating those infected with existing antibiotics. This resistance calls for the search of new antimicrobials from prolific producers of novel natural products including marine sponges. Many of the novel active compounds reported from sponges have originated from their microbial symbionts. Therefore, this study aims to screen for bioactive metabolites from bacteria isolated from sponges. Twelve sponge samples were collected from South Australian marine environments and grown on seven isolation media under four incubation conditions; a total of 1234 bacterial isolates were obtained. Of these, 169 bacteria were tested in media optimized for production of antimicrobial metabolites and screened against eleven human pathogens. Seventy bacteria were found to be active against at least one test bacterial or fungal pathogen, while 37% of the tested bacteria showed activity against Staphylococcus aureus including methicillin-resistant strains and antifungal activity was produced by 21% the isolates. A potential novel active compound was purified possessing inhibitory activity against S. aureus. Using 16S rRNA, the strain was identified as Streptomyces sp. Our study highlights that the marine sponges of South Australia are a rich source of abundant and diverse bacteria producing metabolites with antimicrobial activities against human pathogenic bacteria and fungi.
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42

Abdelmohsen, Usama Ramadan, Kristina Bayer, and Ute Hentschel. "Diversity, abundance and natural products of marine sponge-associated actinomycetes." Nat. Prod. Rep. 31, no. 3 (2014): 381–99. http://dx.doi.org/10.1039/c3np70111e.

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This review discusses the diversity, abundance and natural products repertoire of actinomycetes associated with marine sponges. Comprehensive phylogenetic analysis was carried out and qPCR data on actinomycete abundances in sponge ecosystems are presented.
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43

Nguyen, Mary, Bernd Wemheuer, Patrick W. Laffy, Nicole S. Webster, and Torsten Thomas. "Taxonomic, functional and expression analysis of viral communities associated with marine sponges." PeerJ 9 (February 2, 2021): e10715. http://dx.doi.org/10.7717/peerj.10715.

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Viruses play an essential role in shaping the structure and function of ecological communities. Marine sponges have the capacity to filter large volumes of ‘virus-laden’ seawater through their bodies and host dense communities of microbial symbionts, which are likely accessible to viral infection. However, despite the potential of sponges and their symbionts to act as viral reservoirs, little is known about the sponge-associated virome. Here we address this knowledge gap by analysing metagenomic and (meta-) transcriptomic datasets from several sponge species to determine what viruses are present and elucidate their predicted and expressed functionality. Sponges were found to carry diverse, abundant and active bacteriophages as well as eukaryotic viruses belonging to the Megavirales and Phycodnaviridae. These viruses contain and express auxiliary metabolic genes (AMGs) for photosynthesis and vitamin synthesis as well as for the production of antimicrobials and the defence against toxins. These viral AMGs can therefore contribute to the metabolic capacities of their hosts and also potentially enhance the survival of infected cells. This suggest that viruses may play a key role in regulating the abundance and activities of members of the sponge holobiont.
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44

Hentschel, Ute, Jörn Hopke, Matthias Horn, Anja B. Friedrich, Michael Wagner, Jörg Hacker, and Bradley S. Moore. "Molecular Evidence for a Uniform Microbial Community in Sponges from Different Oceans." Applied and Environmental Microbiology 68, no. 9 (September 2002): 4431–40. http://dx.doi.org/10.1128/aem.68.9.4431-4440.2002.

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ABSTRACT Sponges (class Porifera) are evolutionarily ancient metazoans that populate the tropical oceans in great abundances but also occur in temperate regions and even in freshwater. Sponges contain large numbers of bacteria that are embedded within the animal matrix. The phylogeny of these bacteria and the evolutionary age of the interaction are virtually unknown. In order to provide insights into the species richness of the microbial community of sponges, we performed a comprehensive diversity survey based on 190 sponge-derived 16S ribosomal DNA (rDNA) sequences. The sponges Aplysina aerophoba and Theonella swinhoei were chosen for construction of the bacterial 16S rDNA library because they are taxonomically distantly related and they populate nonoverlapping geographic regions. In both sponges, a uniform microbial community was discovered whose phylogenetic signature is distinctly different from that of marine plankton or marine sediments. Altogether 14 monophyletic, sponge-specific sequence clusters were identified that belong to at least seven different bacterial divisions. By definition, the sequences of each cluster are more closely related to each other than to a sequence from nonsponge sources. These monophyletic clusters comprise 70% of all publicly available sponge-derived 16S rDNA sequences, reflecting the generality of the observed phenomenon. This shared microbial fraction represents the smallest common denominator of the sponges investigated in this study. Bacteria that are exclusively found in certain host species or that occur only transiently would have been missed. A picture emerges where sponges can be viewed as highly concentrated reservoirs of so far uncultured and elusive marine microorganisms.
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45

Varamogianni-Mamatsi, Despoina, Thekla I. Anastasiou, Emmanouela Vernadou, Nikos Papandroulakis, Nicolas Kalogerakis, Thanos Dailianis, and Manolis Mandalakis. "A Multi-Species Investigation of Sponges’ Filtering Activity towards Marine Microalgae." Marine Drugs 20, no. 1 (December 24, 2021): 24. http://dx.doi.org/10.3390/md20010024.

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Chronic discharge of surplus organic matter is a typical side effect of fish aquaculture, occasionally leading to coastal eutrophication and excessive phytoplankton growth. Owing to their innate filter-feeding capacity, marine sponges could mitigate environmental impact under integrated multitrophic aquaculture (IMTA) scenarios. Herein, we investigated the clearance capacity of four ubiquitous Mediterranean sponges (Agelas oroides, Axinella cannabina, Chondrosia reniformis and Sarcotragus foetidus) against three microalgal substrates with different size/motility characteristics: the nanophytoplankton Nannochloropsis sp. (~3.2 μm, nonmotile) and Isochrysis sp. (~3.8 μm, motile), as well as the diatom Phaeodactylum tricornutum (~21.7 μm, nonmotile). In vitro cleaning experiments were conducted using sponge explants in 1 L of natural seawater and applying different microalgal cell concentrations under light/dark conditions. The investigated sponges exhibited a wide range of retention efficiencies for the different phytoplankton cells, with the lowest average values found for A. cannabina (37%) and the highest for A. oroides (70%). The latter could filter up to 14.1 mL seawater per hour and gram of sponge wet weight, by retaining 100% of Isochrysis at a density of 105 cells mL−1, under darkness. Our results highlight differences in filtering capacity among sponge species and preferences for microalgal substrates with distinct size and motility traits.
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46

Soapi, Katy, Klaus-D. Feussner, and William G. Aalbersberg. "Antimicrobial and cytotoxic activities of marine plants and invertebrates from the coast of Espirito Santo in Vanuatu." South Pacific Journal of Natural and Applied Sciences 31, no. 1 (2013): 89. http://dx.doi.org/10.1071/sp13010.

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Marine invertebrates and algae collected off the coast of Espirito Santo in Vanuatu were investigated for antimicrobial and cytotoxic activities. The combined crude methanol-dichloromethane extracts from 52 sponges, 5 algae, 17 soft corals (cnidaria) and 5 other samples of various marine invertebrates were screened for cytotoxicity, antibacterial and antifungal properties. The cytotoxicity of the samples was determined using a brine shrimp lethality test and, notably, 78% of the invertebrate and algae samples showed cytotoxic activity against brine shrimps with the sponge Crella spinulata displaying the strongest activity. Antimicrobial activity was determined against three resistant bacterial strains and two fungal strains. A total of 42% of the samples tested showed antimicrobial activity against at least one of the five strains. The most potent antibacterial activities were recorded for the sponges Lamellodysidea herbacea, Phyllospongia sp., a sponge in the order Halichondrida and Hippospongia metachromia. A Theonella sp. sponge displayed the strongest antifungal activity.
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47

Manconi, R., A. Padiglia, B. M. Padedda, and R. Pronzato. "Invasive green algae in a western Mediterranean Marine Protected Area: interaction of photophilous sponges with Caulerpa cylindracea." Journal of the Marine Biological Association of the United Kingdom 100, no. 3 (March 6, 2020): 361–73. http://dx.doi.org/10.1017/s0025315420000193.

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AbstractWe report on the relationships between some conspicuous Mediterranean photophilous sponge species and Caulerpa cylindracea, a non-indigenous species. A diversification of defence strategies and behaviour is highlighted in target species belonging to different orders of Demospongiae from a western Mediterranean Marine Protected Area (NW Sardinian Sea). Caulerpa cylindracea displays a strongly invasive behaviour during body colonization of the Irciniidae Sarcotragus spinosulus and Ircinia retidermata (order Dictyoceratida). These sponges possess pre-adaptive defensive morpho-functional and physiological traits enabling them to partly withstand algal invasion. Also Aplysina aerophoba (order Verongiida) seems to be able to control colonization. Successful anti-Caulerpa strategies characterize the rarely affected Crambe crambe (order Poecilosclerida). Species-specific competitive strategies are displayed at different levels of body architecture, behaviour and physiology by native sponge species. The invasion patterns on sponges, the invasion dynamics in 2016–2017 and topographic distribution of C. cylindracea on S. spinosulus confirm this algal species as a threat, with potential long-term effects on sponge assemblages. Data suggest other kinds of poorly investigated synergic stressors affecting these habitat-forming species. Defence strategies of sponge species take the form of: (1) passive deterrence by morpho-functional pre-adaptive traits as growth form, biomass amount, surface traits, and microhabitat within the sponges' aquiferous system; (2) active physiological defence, whereby the morphology/anatomy of the sponge body is adapted to control invaders, by body remodelling and regenerative processes within the aquiferous system and at the sponge surface; (3) presumed active chemical defence by exudation processes of bioactive compounds.
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48

Ahn, Young-Beom, Sung-Keun Rhee, Donna E. Fennell, Lee J. Kerkhof, Ute Hentschel, and Max M. Häggblom. "Reductive Dehalogenation of Brominated Phenolic Compounds by Microorganisms Associated with the Marine Sponge Aplysina aerophoba." Applied and Environmental Microbiology 69, no. 7 (July 2003): 4159–66. http://dx.doi.org/10.1128/aem.69.7.4159-4166.2003.

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ABSTRACT Marine sponges are natural sources of brominated organic compounds, including bromoindoles, bromophenols, and bromopyrroles, that may comprise up to 12% of the sponge dry weight. Aplysina aerophoba sponges harbor large numbers of bacteria that can amount to 40% of the biomass of the animal. We postulated that there might be mechanisms for microbially mediated degradation of these halogenated chemicals within the sponges. The capability of anaerobic microorganisms associated with the marine sponge to transform haloaromatic compounds was tested under different electron-accepting conditions (i.e., denitrifying, sulfidogenic, and methanogenic). We observed dehalogenation activity of sponge-associated microorganisms with various haloaromatics. 2-Bromo-, 3-bromo-, 4-bromo-, 2,6-dibromo-, and 2,4,6-tribromophenol, and 3,5-dibromo-4-hydroxybenzoate were reductively debrominated under methanogenic and sulfidogenic conditions with no activity observed in the presence of nitrate. Monochlorinated phenols were not transformed over a period of 1 year. Debromination of 2,4,6-tribromophenol, and 2,6-dibromophenol to 2-bromophenol was more rapid than the debromination of the monobrominated phenols. Ampicillin and chloramphenicol inhibited activity, suggesting that dehalogenation was mediated by bacteria. Characterization of the debrominating methanogenic consortia by using terminal restriction fragment length polymorphism (TRFLP) and denaturing gradient gel electrophoresis analysis indicated that different 16S ribosomal DNA (rDNA) phylotypes were enriched on the different halogenated substrates. Sponge-associated microorganisms enriched on organobromine compounds had distinct 16S rDNA TRFLP patterns and were most closely related to the δ subgroup of the proteobacteria. The presence of homologous reductive dehalogenase gene motifs in the sponge-associated microorganisms suggested that reductive dehalogenation might be coupled to dehalorespiration.
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49

Lee, On On, Yue Him Wong, and Pei-Yuan Qian. "Inter- and Intraspecific Variations of Bacterial Communities Associated with Marine Sponges from San Juan Island, Washington." Applied and Environmental Microbiology 75, no. 11 (April 10, 2009): 3513–21. http://dx.doi.org/10.1128/aem.00002-09.

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ABSTRACT This study attempted to assess whether conspecific or congeneric sponges around San Juan Island, Washington, harbor specific bacterial communities. We used a combination of culture-independent DNA fingerprinting techniques (terminal restriction fragment length polymorphism and denaturing gradient gel electrophoresis [DGGE]) and culture-dependent approaches. The results indicated that the bacterial communities in the water column consisted of more diverse bacterial ribotypes than and were drastically different from those associated with the sponges. High levels of similarity in sponge-associated bacterial communities were found only in Myxilla incrustans and Haliclona rufescens, while the bacterial communities in Halichondria panicea varied substantially among sites. Certain terminal restriction fragments or DGGE bands were consistently obtained for different individuals of M. incrustans and H. rufescens collected from different sites, suggesting that there are stable or even specific associations of certain bacteria in these two sponges. However, no specific bacterial associations were found for H. panicea or for any one sponge genus. Sequencing of nine DGGE bands resulted in recovery of seven sequences that best matched the sequences of uncultured Proteobacteria. Three of these sequences fell into the sponge-specific sequence clusters previously suggested. An uncultured alphaproteobacterium and a culturable Bacillus sp. were found exclusively in all M. incrustans sponges, while an uncultured gammaproteobacterium was unique to H. rufescens. In contrast, the cultivation approach indicated that sponges contained a large proportion of Firmicutes, especially Bacillus, and revealed large variations in the culturable bacterial communities associated with congeneric and conspecific sponges. This study revealed sponge species-specific but not genus- or site-specific associations between sponges and bacterial communities and emphasized the importance of using a combination of techniques for studying microbial communities.
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50

Bell, James J. "The ecology of sponges in Lough Hyne Marine Nature Reserve (south-west Ireland): past, present and future perspectives." Journal of the Marine Biological Association of the United Kingdom 87, no. 6 (December 2007): 1655–68. http://dx.doi.org/10.1017/s0025315407058171.

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Lough Hyne was Europe's first Marine Nature Reserve and is a well known biodiversity hotspot that supports extensive sponge assemblages. The unusual, but predictable, flow and sedimentation regimes have important impacts on the sponge assemblages at the species and assemblage levels. Here I present a review of recent sponge research at Lough Hyne, which covers: (1) a description of the sponge-dominated habitats; (2) the biological and physical factors controlling sponge biodiversity and abundance; (3) sponge species and assemblage level morphological variability; and (4) the relationship between sponge morphological, species and functional diversity. It appears that physical factors are primarily responsible for the sponge diversity and abundance patterns found in Lough Hyne, although the importance of intra- and interphyletic (particularly with algae) competitive interactions requires further investigation. Although our knowledge of how sponges respond and adapt to environmental variability has increased substantially because of the research conducted at Lough Hyne, I have highlighted a number of future research areas in the context of Lough Hyne sponge assemblages, which are relevant to understanding structuring processes across the globe.
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